TAF1

TAF1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1EQF, 3AAD, 3UV4, 3UV5, 4RGW, 4YYM, 4YYN, 5I29, 5I1Q, 5FUR
Identifiers
Aliases	TAF1 , BA2R, CCG1, CCGS, DYT3, DYT3/KAT4, N-NSCL2, OF, P250, TAF(II)250, TAF2A, TAFII-250, TAFII250, XDP, MRXS33, TATA-box binding protein associated factor 1
External IDs	OMIM: 313650 MGI: 1336878 HomoloGene: 37942 GeneCards: TAF1
Gene location (Human) Chr. X chromosome (human) [1] Band Xq13.1 Start 71,366,222 bp [1] End 71,532,374 bp [1]
Gene location (Mouse) Chr. X chromosome (mouse) [2] Band X D|X 44.29 cM Start 100,576,340 bp [2] End 100,645,395 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in sural nerve Achilles tendon urethra thymus lactiferous duct pericardium corpus callosum right coronary artery internal globus pallidus stromal cell of endometrium Top expressed in hand maxillary prominence ventral tegmental area arcuate nucleus pineal gland otolith organ dorsomedial hypothalamic nucleus paraventricular nucleus of hypothalamus medullary collecting duct pituitary gland More reference expression data BioGPS More reference expression data
Gene ontology Molecular function transferase activity nucleotide binding DNA binding transcription coactivator activity p53 binding transcription factor binding protein binding lysine-acetylated histone binding TBP-class protein binding acyltransferase activity ATP binding protein serine/threonine kinase activity histone acetyltransferase activity kinase activity protein heterodimerization activity H3K27me3 modified histone binding ubiquitin conjugating enzyme activity acetyl-CoA binding sequence-specific DNA binding RNA polymerase II core promoter sequence-specific DNA binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor activity, RNA polymerase II-specific RNA polymerase II general transcription initiation factor activity Cellular component nucleoplasm MLL1 complex nucleus nucleolus transcription regulator complex transcription factor TFIID complex Biological process phosphorylation RNA polymerase II preinitiation complex assembly transcription by RNA polymerase II positive regulation of transcription initiation from RNA polymerase II promoter transcription, DNA-templated peptidyl-serine phosphorylation DNA-templated transcription, initiation protein autophosphorylation cell cycle transcription initiation from RNA polymerase II promoter peptidyl-threonine phosphorylation positive regulation of proteasomal ubiquitin-dependent protein catabolic process positive regulation of transcription by RNA polymerase II regulation of signal transduction by p53 class mediator viral process histone acetylation protein polyubiquitination protein phosphorylation cellular response to DNA damage stimulus negative regulation of gene expression midbrain development positive regulation of protein binding cellular response to UV transcription factor catabolic process protein stabilization regulation of transcription initiation from RNA polymerase II promoter cellular response to ATP regulation of cell cycle G1/S phase transition negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding negative regulation of protein autoubiquitination negative regulation of ubiquitin-dependent protein catabolic process positive regulation of androgen receptor activity positive regulation of transcription by RNA polymerase I regulation of transcription, DNA-templated negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage negative regulation of DNA-binding transcription factor activity ubiquitin-dependent protein catabolic process Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 6872 270627 Ensembl ENSG00000147133 ENSMUSG00000031314 UniProt P21675 Q80UV9 RefSeq (mRNA) NM_001286074 NM_004606 NM_138923 NM_001081008 NM_001290729 RefSeq (protein) NP_001273003 NP_004597 NP_620278 NP_001277658 NP_001392888 NP_001392889 NP_001392890 NP_001392891 Location (UCSC) Chr X: 71.37 – 71.53 Mb Chr X: 100.58 – 100.65 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Transcription initiation factor TFIID subunit 1, also known as transcription initiation factor TFIID 250 kDa subunit (TAFII-250) or TBP-associated factor 250 kDa (p250), is a protein that in humans is encoded by the TAF1 gene. ^{[5] [6]}

Function

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is the basal transcription factor TFIID, which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes the largest subunit of TFIID. This subunit binds to core promoter sequences encompassing the transcription start site. It also binds to activators and other transcriptional regulators, and these interactions affect the rate of transcription initiation. This subunit contains two independent protein kinase domains at the N and C-terminals, but also possesses acetyltransferase activity and can act as a ubiquitin-activating/conjugating enzyme. Two transcripts encoding different isoforms have been identified for this gene. ^[5] Histones are often acetylated to open DNA for transcription. TAF1 contains two bromodomains, which each can bind one of two acetyllysine residues at position 5 and 12 in the H4 tail, to stabilize the TBP-TATA box complex.

Clinical significance

A mutation in TAF1 was identified that contributes to a phenotype with severe intellectual disability (ID), a characteristic intergluteal crease, and distinctive facial features, including a broad, upturned nose, sagging cheeks, downward sloping palpebral fissures, prominent periorbital ridges, deep-set eyes, relative hypertelorism, thin upper lip, a high-arched palate, prominent ears with thickened helices, and a pointed chin ^{[7] [8]} This is a non-synonymous change in TAF1 that results in an isoleucine (hydrophobic) to threonine (polar) change on the 1337th amino acid residue in the protein (NP_001273003.1). Two other mutations were reported in TAF1 in two families with intellectual disability, although further clinical details were not reported. ^[9]

Interactions

TAF1 has been shown to interact with:

• CSNK2A1, ^[10]
• CCND1, ^{[11] [12]}
• GTF2F1, ^{[13] [14] [15] [16]}
• RB1, ^{[12] [13] [17] [18]}
• TAF7, ^[19]
• TBP, ^{[13] [20] [21] [22]} and
• UBTF. ^[23]

See also

• Transcription factor II D

References

1. GRCh38: Ensembl release 89: ENSG00000147133 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000031314 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Entrez Gene: TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa".
6. Sekiguchi T, Yoshida MC, Sekiguchi M, Nishimoto T (April 1987). "Isolation of a human X chromosome-linked gene essential for progression from G1 to S phase of the cell cycle". Exp. Cell Res. 169 (2): 395–407. doi:10.1016/0014-4827(87)90200-X. PMID   3556424.
7. He M, Person TN, Hebbring SJ, Heinzen E, Ye Z, Schrodi SJ, McPherson EW, Lin SM, Peissig PL, Brilliant MH, O'Rawe J, Robison RJ, Lyon GJ, Wang K (Jan 2015). "SeqHBase: a big data toolset for family based sequencing data analysis". Journal of Medical Genetics. 52 (4): 282–8. doi:10.1136/jmedgenet-2014-102907. PMC   4382803 . PMID   25587064.
8. O'Rawe JA, Wu Y, Dörfel MJ, Rope AF, Au PY, Parboosingh JS, Moon S, Kousi M, Kosma K, Smith CS, Tzetis M, Schuette JL, Hufnagel RB, Prada CE, Martinez F, Orellana C, Crain J, Caro-Llopis A, Oltra S, Monfort S, Jiménez-Barrón LT, Swensen J, Ellingwood S, Smith R, Fang H, Ospina S, Stegmann S, Den Hollander N, Mittelman D, Highnam G, Robison R, Yang E, Faivre L, Roubertie A, Rivière JB, Monaghan KG, Wang K, Davis EE, Katsanis N, Kalscheuer VM, Wang EH, Metcalfe K, Kleefstra T, Innes AM, Kitsiou-Tzeli S, Rosello M, Keegan CE, Lyon GJ (2015). "A variant in TAF1 is associated with a new syndrome with severe intellectual disability and characteristic dysmorphic features". The American Journal of Human Genetics. 97 (6): 922–932. doi:10.1016/j.ajhg.2015.11.005. PMC   4678794 . PMID   26637982.
9. Hu H, Haas SA, Chelly J, Van Esch H, Raynaud M, de Brouwer AP, Weinert S, Froyen G, Frints SG, Laumonnier F, Zemojtel T, Love MI, Richard H, Emde AK, Bienek M, Jensen C, Hambrock M, Fischer U, Langnick C, Feldkamp M, Wissink-Lindhout W, Lebrun N, Castelnau L, Rucci J, Montjean R, Dorseuil O, Billuart P, Stuhlmann T, Shaw M, Corbett MA, Gardner A, Willis-Owen S, Tan C, Friend KL, Belet S, van Roozendaal KE, Jimenez-Pocquet M, Moizard MP, Ronce N, Sun R, O'Keeffe S, Chenna R, van Bömmel A, Göke J, Hackett A, Field M, Christie L, Boyle J, Haan E, Nelson J, Turner G, Baynam G, Gillessen-Kaesbach G, Müller U, Steinberger D, Budny B, Badura-Stronka M, Latos-Bieleńska A, Ousager LB, Wieacker P, Rodríguez Criado G, Bondeson ML, Annerén G, Dufke A, Cohen M, Van Maldergem L, Vincent-Delorme C, Echenne B, Simon-Bouy B, Kleefstra T, Willemsen M, Fryns JP, Devriendt K, Ullmann R, Vingron M, Wrogemann K, Wienker TF, Tzschach A, van Bokhoven H, Gecz J, Jentsch TJ, Chen W, Ropers HH, Kalscheuer VM (Feb 2015). "X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes" (PDF). Molecular Psychiatry. 21 (1): 133–48. doi:10.1038/mp.2014.193. PMC   5414091 . PMID   25644381.
10. Allende-Vega N, McKenzie L, Meek D (September 2008). "Transcription factor TAFII250 phosphorylates the acidic domain of Mdm2 through recruitment of protein kinase CK2". Mol. Cell. Biochem. 316 (1–2): 99–106. doi:10.1007/s11010-008-9816-3. PMID   18548200. S2CID   25685775.
11. Adnane J, Shao Z, Robbins PD (January 1999). "Cyclin D1 associates with the TBP-associated factor TAF(II)250 to regulate Sp1-mediated transcription". Oncogene. 18 (1): 239–47. doi: 10.1038/sj.onc.1202297 . PMID   9926939.
12. Siegert JL, Rushton JJ, Sellers WR, Kaelin WG, Robbins PD (November 2000). "Cyclin D1 suppresses retinoblastoma protein-mediated inhibition of TAFII250 kinase activity". Oncogene. 19 (50): 5703–11. doi: 10.1038/sj.onc.1203966 . PMID   11126356.
13. Siegert JL, Robbins PD (January 1999). "Rb inhibits the intrinsic kinase activity of TATA-binding protein-associated factor TAFII250". Mol. Cell. Biol. 19 (1): 846–54. doi:10.1128/MCB.19.1.846. PMC   83941 . PMID   9858607.
14. Dikstein R, Ruppert S, Tjian R (March 1996). "TAFII250 is a bipartite protein kinase that phosphorylates the base transcription factor RAP74". Cell. 84 (5): 781–90. doi: 10.1016/s0092-8674(00)81055-7 . PMID   8625415.
15. Ruppert S, Tjian R (November 1995). "Human TAFII250 interacts with RAP74: implications for RNA polymerase II initiation". Genes Dev. 9 (22): 2747–55. doi: 10.1101/gad.9.22.2747 . PMID   7590250.
16. Malik S, Guermah M, Roeder RG (March 1998). "A dynamic model for PC4 coactivator function in RNA polymerase II transcription". Proc. Natl. Acad. Sci. U.S.A. 95 (5): 2192–7. Bibcode:1998PNAS...95.2192M. doi: 10.1073/pnas.95.5.2192 . PMC   19292 . PMID   9482861.
17. Shao Z, Ruppert S, Robbins PD (April 1995). "The retinoblastoma-susceptibility gene product binds directly to the human TATA-binding protein-associated factor TAFII250". Proc. Natl. Acad. Sci. U.S.A. 92 (8): 3115–9. Bibcode:1995PNAS...92.3115S. doi: 10.1073/pnas.92.8.3115 . PMC   42115 . PMID   7724524.
18. Shao Z, Siegert JL, Ruppert S, Robbins PD (July 1997). "Rb interacts with TAF(II)250/TFIID through multiple domains". Oncogene. 15 (4): 385–92. doi: 10.1038/sj.onc.1201204 . PMID   9242374.
19. Gegonne A, Weissman JD, Singer DS (October 2001). "TAFII55 binding to TAFII250 inhibits its acetyltransferase activity". Proc. Natl. Acad. Sci. U.S.A. 98 (22): 12432–7. Bibcode:2001PNAS...9812432G. doi: 10.1073/pnas.211444798 . PMC   60071 . PMID   11592977.
20. Bellorini M, Lee DK, Dantonel JC, Zemzoumi K, Roeder RG, Tora L, Mantovani R (June 1997). "CCAAT binding NF-Y-TBP interactions: NF-YB and NF-YC require short domains adjacent to their histone fold motifs for association with TBP basic residues". Nucleic Acids Res. 25 (11): 2174–81. doi:10.1093/nar/25.11.2174. PMC   146709 . PMID   9153318.
21. Ruppert S, Wang EH, Tjian R (March 1993). "Cloning and expression of human TAFII250: a TBP-associated factor implicated in cell-cycle regulation". Nature. 362 (6416): 175–9. Bibcode:1993Natur.362..175R. doi: 10.1038/362175a0 . PMID   7680771. S2CID   4364676.
22. O'Brien T, Tjian R (May 1998). "Functional analysis of the human TAFII250 N-terminal kinase domain". Mol. Cell. 1 (6): 905–11. doi: 10.1016/s1097-2765(00)80089-1 . PMID   9660973.
23. Lin CY, Tuan J, Scalia P, Bui T, Comai L (Dec 2002). "The cell cycle regulatory factor TAF1 stimulates ribosomal DNA transcription by binding to the activator UBF". Curr. Biol. 12 (24): 2142–6. doi: 10.1016/s0960-9822(02)01389-1 . PMID   12498690.

Further reading

• Wassarman DA, Sauer F (2001). "TAF(II)250: a transcription toolbox". J. Cell Sci. 114 (Pt 16): 2895–902. doi:10.1242/jcs.114.16.2895. PMID   11686293.
• Ha I, Lane WS, Reinberg D (1991). "Cloning of a human gene encoding the general transcription initiation factor IIB". Nature. 352 (6337): 689–95. Bibcode:1991Natur.352..689H. doi:10.1038/352689a0. PMID   1876184. S2CID   4267950.
• Sekiguchi T, Nohiro Y, Nakamura Y, Hisamoto N, Nishimoto T (1991). "The human CCG1 gene, essential for progression of the G1 phase, encodes a 210-kilodalton nuclear DNA-binding protein". Mol. Cell. Biol. 11 (6): 3317–25. doi:10.1128/mcb.11.6.3317. PMC   360184 . PMID   2038334.
• Sekiguchi T, Miyata T, Nishimoto T (1988). "Molecular cloning of the cDNA of human X chromosomal gene (CCG1) which complements the temperature-sensitive G1 mutants, tsBN462 and ts13, of the BHK cell line". EMBO J. 7 (6): 1683–7. doi:10.1002/j.1460-2075.1988.tb02996.x. PMC   457153 . PMID   3169001.
• Sekiguchi T, Yoshida MC, Sekiguchi M, Nishimoto T (1987). "Isolation of a human X chromosome-linked gene essential for progression from G1 to S phase of the cell cycle". Exp. Cell Res. 169 (2): 395–407. doi:10.1016/0014-4827(87)90200-X. PMID   3556424.
• Ruppert S, Tjian R (1995). "Human TAFII250 interacts with RAP74: implications for RNA polymerase II initiation". Genes Dev. 9 (22): 2747–55. doi: 10.1101/gad.9.22.2747 . PMID   7590250.
• Hisatake K, Ohta T, Takada R, Guermah M, Horikoshi M, Nakatani Y, Roeder RG (1995). "Evolutionary conservation of human TATA-binding-polypeptide-associated factors TAFII31 and TAFII80 and interactions of TAFII80 with other TAFs and with general transcription factors". Proc. Natl. Acad. Sci. U.S.A. 92 (18): 8195–9. Bibcode:1995PNAS...92.8195H. doi: 10.1073/pnas.92.18.8195 . PMC   41123 . PMID   7667268.
• Ruppert S, Wang EH, Tjian R (1993). "Cloning and expression of human TAFII250: a TBP-associated factor implicated in cell-cycle regulation". Nature. 362 (6416): 175–9. Bibcode:1993Natur.362..175R. doi: 10.1038/362175a0 . PMID   7680771. S2CID   4364676.
• Shao Z, Ruppert S, Robbins PD (1995). "The retinoblastoma-susceptibility gene product binds directly to the human TATA-binding protein-associated factor TAFII250". Proc. Natl. Acad. Sci. U.S.A. 92 (8): 3115–9. Bibcode:1995PNAS...92.3115S. doi: 10.1073/pnas.92.8.3115 . PMC   42115 . PMID   7724524.
• DeJong J, Bernstein R, Roeder RG (1995). "Human general transcription factor TFIIA: characterization of a cDNA encoding the small subunit and requirement for basal and activated transcription". Proc. Natl. Acad. Sci. U.S.A. 92 (8): 3313–7. Bibcode:1995PNAS...92.3313D. doi: 10.1073/pnas.92.8.3313 . PMC   42156 . PMID   7724559.
• Thut CJ, Chen JL, Klemm R, Tjian R (1995). "p53 transcriptional activation mediated by coactivators TAFII40 and TAFII60". Science. 267 (5194): 100–4. doi:10.1126/science.7809597. PMID   7809597.
• Zhou Q, Sharp PA (1995). "Novel mechanism and factor for regulation by HIV-1 Tat". EMBO J. 14 (2): 321–8. doi:10.1002/j.1460-2075.1995.tb07006.x. PMC   398086 . PMID   7835343.
• Parada CA, Yoon JB, Roeder RG (1995). "A novel LBP-1-mediated restriction of HIV-1 transcription at the level of elongation in vitro". J. Biol. Chem. 270 (5): 2274–83. doi: 10.1074/jbc.270.5.2274 . PMID   7836461.
• Jacq X, Brou C, Lutz Y, Davidson I, Chambon P, Tora L (1994). "Human TAFII30 is present in a distinct TFIID complex and is required for transcriptional activation by the estrogen receptor". Cell. 79 (1): 107–17. doi:10.1016/0092-8674(94)90404-9. PMID   7923369. S2CID   19698550.
• Ou SH, Garcia-Martínez LF, Paulssen EJ, Gaynor RB (1994). "Role of flanking E box motifs in human immunodeficiency virus type 1 TATA element function". J. Virol. 68 (11): 7188–99. doi:10.1128/JVI.68.11.7188-7199.1994. PMC   237158 . PMID   7933101.
• Sun X, Ma D, Sheldon M, Yeung K, Reinberg D (1994). "Reconstitution of human TFIIA activity from recombinant polypeptides: a role in TFIID-mediated transcription". Genes Dev. 8 (19): 2336–48. doi: 10.1101/gad.8.19.2336 . PMID   7958900.
• Metz R, Bannister AJ, Sutherland JA, Hagemeier C, O'Rourke EC, Cook A, Bravo R, Kouzarides T (1994). "c-Fos-induced activation of a TATA-box-containing promoter involves direct contact with TATA-box-binding protein". Mol. Cell. Biol. 14 (9): 6021–9. doi:10.1128/MCB.14.9.6021. PMC   359128 . PMID   8065335.
• Kashanchi F, Piras G, Radonovich MF, Duvall JF, Fattaey A, Chiang CM, Roeder RG, Brady JN (1994). "Direct interaction of human TFIID with the HIV-1 transactivator tat". Nature. 367 (6460): 295–9. Bibcode:1994Natur.367..295K. doi:10.1038/367295a0. PMID   8121496. S2CID   4362048.
• Nakashima T, Sekiguchi T, Sunamoto H, Yura K, Tomoda S, Go M, Kere J, Schlessinger D, Nishimoto T (1994). "Structure of the human CCG1 gene: relationship between the exons/introns and functional domain/modules of the protein". Gene. 141 (2): 193–200. doi:10.1016/0378-1119(94)90570-3. PMID   8163188.
• Ma D, Watanabe H, Mermelstein F, Admon A, Oguri K, Sun X, Wada T, Imai T, Shiroya T, Reinberg D (1993). "Isolation of a cDNA encoding the largest subunit of TFIIA reveals functions important for activated transcription". Genes Dev. 7 (11): 2246–57. doi: 10.1101/gad.7.11.2246 . PMID   8224850.

External links

• FactorBook TAF1
• GeneReviews/NCBI/NIH/UW entry on X-Linked Dystonia-Parkinsonism
• http://biorxiv.org/content/early/2015/01/21/014050
• Overview of all the structural information available in the PDB for UniProt : P21675 (Transcription initiation factor TFIID subunit 1) at the PDBe-KB .

This article incorporates text from the United States National Library of Medicine, which is in the public domain.