SS18L1

SS18L1
Identifiers
Aliases	SS18L1 , CREST, LP2261, nBAF chromatin remodeling complex subunit, SS18L1 subunit of BAF chromatin remodeling complex, SMARCL2
External IDs	OMIM: 606472 MGI: 2444061 HomoloGene: 9191 GeneCards: SS18L1
Gene location (Human)
Chr.	Chromosome 20 (human)
End	62,182,514 bp
Gene location (Mouse)
Chr.	Chromosome 2 (mouse)
End	179,711,994 bp
RNA expression pattern
	Top expressed in
	cerebellar vermis; ; cerebellar hemisphere; ; postcentral gyrus; ; ganglionic eminence; ; pons; ; right lobe of liver; ; tibia; ; superior frontal gyrus; ; superior vestibular nucleus; ; subthalamic nucleus;
	Top expressed in
	Region I of hippocampus proper; ; otolith organ; ; utricle; ; paraventricular nucleus of hypothalamus; ; dorsomedial hypothalamic nucleus; ; ventral tegmental area; ; supraoptic nucleus; ; arcuate nucleus; ; lateral hypothalamus; ; subiculum;
	More reference expression data
	More reference expression data
Gene ontology
Molecular function	protein binding ; transcription coactivator activity ;
Cellular component	nBAF complex ; nuclear body ; chromosome, centromeric region ; kinetochore ; chromosome ; nucleus ; cytosol ;
Biological process	positive regulation of transcription, DNA-templated ; dendrite development ; positive regulation of dendrite morphogenesis ; regulation of dendrite development ; regulation of transcription, DNA-templated ; transcription, DNA-templated ; chromatin organization ; positive regulation of transcription by RNA polymerase II ;
	Sources:Amigo / QuickGO
Orthologs
	26039
	269397
	ENSG00000184402
	ENSMUSG00000039086
	O75177
	Q8BW22
	NM_001301778 ; NM_015558 ; NM_198935
	NM_178750
	NP_001288707 ; NP_945173
	NP_848865
	Wikidata
View/Edit Human	View/Edit Mouse

Last updated October 18, 2022

SS18-like protein 1 is a protein that in humans is encoded by the SS18L1 gene.^[5]

Function

Synovial sarcomas occur most frequently in the extremities around large joints. More than 90% of cases have a recurrent and specific chromosomal translocation, t(X;18)(p11.2;q11.2), in which the 5-prime end of the SS18 gene is fused in-frame to the 3-prime end of the SSX1, SSX2, or SSX4 gene. The SS18L1 gene is homologous to SS18.^[5]

Interactions

SS18L1 has been shown to interact with CREB-binding protein.^[6] Biochemical pull down assays reveal SS18L1 to interact with several components of the human SWI/SNF chromatin remodeling complex.^[7]

Related Research Articles

A synovial sarcoma is a rare form of cancer which occurs primarily in the extremities of the arms or legs, often in proximity to joint capsules and tendon sheaths. It is a type of soft-tissue sarcoma.

Proto-oncogene tyrosine-protein kinase Yes is a non-receptor tyrosine kinase that in humans is encoded by the YES1 gene.

Probable global transcription activator SNF2L2 is a protein that in humans is encoded by the SMARCA2 gene.

Programmed cell death 6-interacting protein also known as ALIX is a protein that in humans is encoded by the PDCD6IP gene.

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 is a protein that in humans is encoded by the SMARCA5 gene.

AT-rich interactive domain-containing protein 1A is a protein that in humans is encoded by the ARID1A gene.

SWI/SNF complex subunit SMARCC1 is a protein that in humans is encoded by the SMARCC1 gene.

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 is a protein that in humans is encoded by the SMARCE1 gene.

SWI/SNF complex subunit SMARCC2 is a protein that in humans is encoded by the SMARCC2 gene.

Protein SSX2 is a protein that in humans is encoded by the SSX2 gene.

Protein SSXT is a protein that in humans is encoded by the SS18 gene.

Interleukin-18-binding protein is a protein that in humans is encoded by the IL18BP gene.

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 is a protein that in humans is encoded by the SMARCD1 gene.

Nuclear protein 1 is a protein that in humans is encoded by the NUPR1 gene.

Calcium channel, voltage-dependent, gamma subunit 2, also known as CACNG2 or stargazin is a protein that in humans is encoded by the CACNG2 gene.

Protein SSX1 is a protein that in humans is encoded by the SSX1 gene.

Afadin- and alpha-actinin-binding protein is a protein that in humans is encoded by the SSX2IP gene. It has been shown that it functions together with WDR8 in centrosome maturation, ensuring proper spindle length and orientation. The SSX2IP-WDR8 complex additionally promotes ciliary vesicle docking during ciliogenesis.

Protein SSX4 is a protein that in humans is encoded by the SSX4 gene.

Protein AF-10 is a protein that in humans is encoded by the MLLT10 gene.

Protein SSX5 is a protein that in humans is encoded by the SSX5 gene.

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000184402 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000039086 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
1 2 "Entrez Gene: SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1".
↑ Aizawa H, Hu SC, Bobb K, Balakrishnan K, Ince G, Gurevich I, Cowan M, Ghosh A (January 2004). "Dendrite development regulated by CREST, a calcium-regulated transcriptional activator". Science. 303 (5655): 197–202. Bibcode:2004Sci...303..197A. doi:10.1126/science.1089845. PMID 14716005. S2CID 20879721.
↑ Middeljans E, Wan X, Jansen PW, Sharma V, Stunnenberg HG, Logie C (2012). "SS18 together with animal-specific factors defines human BAF-type SWI/SNF complexes". PLOS ONE. 7 (3): e33834. Bibcode:2012PLoSO...733834M. doi: 10.1371/journal.pone.0033834 . PMC 3307773 . PMID 22442726.

Ishikawa K, Nagase T, Suyama M, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O (June 1998). "Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro". DNA Research. 5 (3): 169–76. doi: 10.1093/dnares/5.3.169 . PMID 9734811.
de Bruijn DR, Kater-Baats E, Eleveld M, Merkx G, Geurts Van Kessel A (2001). "Mapping and characterization of the mouse and human SS18 genes, two human SS18-like genes and a mouse Ss18 pseudogene". Cytogenetics and Cell Genetics. 92 (3–4): 310–9. doi:10.1159/000056920. PMID 11435705. S2CID 22518714.
Storlazzi CT, Mertens F, Mandahl N, Gisselsson D, Isaksson M, Gustafson P, Domanski HA, Panagopoulos I (June 2003). "A novel fusion gene, SS18L1/SSX1, in synovial sarcoma". Genes, Chromosomes & Cancer. 37 (2): 195–200. doi:10.1002/gcc.10210. PMID 12696068. S2CID 40041616.
Aizawa H, Hu SC, Bobb K, Balakrishnan K, Ince G, Gurevich I, Cowan M, Ghosh A (January 2004). "Dendrite development regulated by CREST, a calcium-regulated transcriptional activator". Science. 303 (5655): 197–202. Bibcode:2004Sci...303..197A. doi:10.1126/science.1089845. PMID 14716005. S2CID 20879721.
Pradhan A, Liu Y (July 2005). "A multifunctional domain of the calcium-responsive transactivator (CREST) that inhibits dendritic growth in cultured neurons". The Journal of Biological Chemistry. 280 (26): 24738–43. doi: 10.1074/jbc.M504018200 . PMID 15866867.
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M (October 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
de Bruijn DR, Geurts van Kessel A (2006). "Common origin of the human synovial sarcoma associated SS18 and SS18L1 gene loci". Cytogenetic and Genome Research. 112 (3–4): 222–6. doi:10.1159/000089874. PMID 16484776.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000184402 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000039086 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[entrez-5] 1 2 "Entrez Gene: SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1".

[pmid14716005-6] Aizawa H, Hu SC, Bobb K, Balakrishnan K, Ince G, Gurevich I, Cowan M, Ghosh A (January 2004). "Dendrite development regulated by CREST, a calcium-regulated transcriptional activator". Science. 303 (5655): 197–202. Bibcode:2004Sci...303..197A. doi:10.1126/science.1089845. PMID 14716005. S2CID 20879721.

[7] Middeljans E, Wan X, Jansen PW, Sharma V, Stunnenberg HG, Logie C (2012). "SS18 together with animal-specific factors defines human BAF-type SWI/SNF complexes". PLOS ONE. 7 (3): e33834. Bibcode:2012PLoSO...733834M. doi: 10.1371/journal.pone.0033834 . PMC 3307773 . PMID 22442726.

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SS18L1

Contents

Function

Interactions

Related Research Articles

References

Further reading