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A fumarole is a vent in the surface of the Earth or other rocky planet from which hot volcanic gases and vapors are emitted, without any accompanying liquids or solids. Fumaroles are characteristic of the late stages of volcanic activity, but fumarole activity can also precede a volcanic eruption and has been used for eruption prediction. Most fumaroles die down within a few days or weeks of the end of an eruption, but a few are persistent, lasting for decades or longer. An area containing fumaroles is known as a fumarole field.
In biochemistry, chemosynthesis is the biological conversion of one or more carbon-containing molecules and nutrients into organic matter using the oxidation of inorganic compounds or ferrous ions as a source of energy, rather than sunlight, as in photosynthesis. Chemoautotrophs, organisms that obtain carbon from carbon dioxide through chemosynthesis, are phylogenetically diverse. Groups that include conspicuous or biogeochemically-important taxa include the sulfur-oxidizing Gammaproteobacteria, the Campylobacterota, the Aquificota, the methanogenic archaea, and the neutrophilic iron-oxidizing bacteria.
Chloroflexus aurantiacus is a photosynthetic bacterium isolated from hot springs, belonging to the green non-sulfur bacteria. This organism is thermophilic and can grow at temperatures from 35 °C to 70 °C. Chloroflexus aurantiacus can survive in the dark if oxygen is available. When grown in the dark, Chloroflexus aurantiacus has a dark orange color. When grown in sunlight it is dark green. The individual bacteria tend to form filamentous colonies enclosed in sheaths, which are known as trichomes.
Purple bacteria or purple photosynthetic bacteria are Gram-negative proteobacteria that are phototrophic, capable of producing their own food via photosynthesis. They are pigmented with bacteriochlorophyll a or b, together with various carotenoids, which give them colours ranging between purple, red, brown, and orange. They may be divided into two groups – purple sulfur bacteria and purple non-sulfur bacteria (Rhodospirillaceae). Purple bacteria are anoxygenic phototrophs widely spread in nature, but especially in aquatic environments, where there are anoxic conditions that favor the synthesis of their pigments.
Thiobacillus is a genus of Gram-negative Betaproteobacteria. Thiobacillus thioparus is the type species of the genus, and the type strain thereof is the StarkeyT strain, isolated by Robert Starkey in the 1930s from a field at Rutgers University in the United States of America. While over 30 "species" have been named in this genus since it was defined by Martinus Beijerinck in 1904,, most names were never validly or effectively published. The remainder were either reclassified into Paracoccus, Starkeya ; Sulfuriferula, Annwoodia, Thiomonas ; Halothiobacillus, Guyparkeria, or Thermithiobacillus or Acidithiobacillus. The very loosely defined "species" Thiobacillus trautweinii was where sulfur oxidising heterotrophs and chemolithoheterotrophs were assigned in the 1910-1960s era, most of which were probably Pseudomonas species. Many species named in this genus were never deposited in service collections and have been lost.
Acidithiobacillus is a genus of the Acidithiobacillia in the "Pseudomonadota". The genus includes acidophilic organisms capable of iron and/or sulfur oxidation. Like all "Pseudomonadota", Acidithiobacillus spp. are Gram-negative. They are also important generators of acid mine drainage, which is a major environmental problem around the world in mining.
Sulfur-reducing bacteria are microorganisms able to reduce elemental sulfur (S0) to hydrogen sulfide (H2S). These microbes use inorganic sulfur compounds as electron acceptors to sustain several activities such as respiration, conserving energy and growth, in absence of oxygen. The final product or these processes, sulfide, has a considerable influence on the chemistry of the environment and, in addition, is used as electron donor for a large variety of microbial metabolisms. Several types of bacteria and many non-methanogenic archaea can reduce sulfur. Microbial sulfur reduction was already shown in early studies, which highlighted the first proof of S0 reduction in a vibrioid bacterium from mud, with sulfur as electron acceptor and H
2 as electron donor. The first pure cultured species of sulfur-reducing bacteria, Desulfuromonas acetoxidans, was discovered in 1976 and described by Pfennig Norbert and Biebel Hanno as an anaerobic sulfur-reducing and acetate-oxidizing bacterium, not able to reduce sulfate. Only few taxa are true sulfur-reducing bacteria, using sulfur reduction as the only or main catabolic reaction. Normally, they couple this reaction with the oxidation of acetate, succinate or other organic compounds. In general, sulfate-reducing bacteria are able to use both sulfate and elemental sulfur as electron acceptors. Thanks to its abundancy and thermodynamic stability, sulfate is the most studied electron acceptor for anaerobic respiration that involves sulfur compounds. Elemental sulfur, however, is very abundant and important, especially in deep-sea hydrothermal vents, hot springs and other extreme environments, making its isolation more difficult. Some bacteria – such as Proteus, Campylobacter, Pseudomonas and Salmonella – have the ability to reduce sulfur, but can also use oxygen and other terminal electron acceptors.
Beggiatoa is a genus of Gammaproteobacteria belonging the order Thiotrichales, in the Pseudomonadota phylum. This genus was one of the first bacteria discovered by Ukrainian botanist Sergei Winogradsky. During his research in Anton de Bary’s laboratory of botany in 1887, he found that Beggiatoa oxidized hydrogen sulfide (H2S) as energy source, forming intracellular sulfur droplets, oxygen is the terminal electron acceptor and CO2 is used as carbon source. Winogradsky named it in honor of the Italian doctor and botanist Francesco Secondo Beggiato (1806 - 1883), from Venice. Winogradsky referred to this form of metabolism as "inorgoxidation" (oxidation of inorganic compounds), today called chemolithotrophy. These organisms live in sulfur-rich environments such as soil, both marine and freshwater, in the deep sea hydrothermal vents and in polluted marine environments. The finding represented the first discovery of lithotrophy. Two species of Beggiatoa have been formally described: the type species Beggiatoa alba and Beggiatoa leptomitoformis, the latter of which was only published in 2017. This colorless and filamentous bacterium, sometimes in association with other sulfur bacteria (for example the genus Thiothrix), can be arranged in biofilm visible to the naked eye formed by a very long white filamentous mat, the white color is due to the stored sulfur. Species of Beggiatoa have cells up to 200 µm in diameter and they are one of the largest prokaryotes on Earth.
Thermococcus litoralis is a species of Archaea that is found around deep-sea hydrothermal vents as well as shallow submarine thermal springs and oil wells. It is an anaerobic organotroph hyperthermophile that is between 0.5–3.0 μm (20–118 μin) in diameter. Like the other species in the order thermococcales, T. litoralis is an irregular hyperthermophile coccus that grows between 55–100 °C (131–212 °F). Unlike many other thermococci, T. litoralis is non-motile. Its cell wall consists only of a single S-layer that does not form hexagonal lattices. Additionally, while many thermococcales obligately use sulfur as an electron acceptor in metabolism, T. litoralis only needs sulfur to help stimulate growth, and can live without it. T. litoralis has recently been popularized by the scientific community for its ability to produce an alternative DNA polymerase to the commonly used Taq polymerase. The T. litoralis polymerase, dubbed the vent polymerase, has been shown to have a lower error rate than Taq but due to its proofreading 3’–5’ exonuclease abilities.
Hydrogenobacter thermophilus is an extremely thermophilic, straight rod (bacillus) bacterium. TK-6 is the type strain for this species. It is a Gram negative, non-motile, obligate chemolithoautotroph. It belongs to one of the earliest branching order of Bacteria. H. thermophilus TK-6 lives in soil that contains hot water. It was one of the first hydrogen oxidizing bacteria described leading to the discovery, and subsequent examination of many unique proteins involved in its metabolism. Its discovery contradicted the idea that no obligate hydrogen oxidizing bacteria existed, leading to a new understanding of this physiological group. Additionally, H. thermophilus contains a fatty acid composition that had not been observed before.
Thiomonas bhubaneswarensis is a Gram-negative, oxidase- and catalase-positive, strictly aerobic, moderately thermophilic non-spore-forming, rod-shaped, motile bacterium with a single polar flagellum from the genus Thiomonas, which was isolated from hot-spring sediment samples in Atri in Bhubaneswar. T. bhubaneswarensis has the ability to oxidize thiosulfate.
Sulfolobus metallicus is a coccoid shaped thermophilic archaeon. It is a strict chemolithoautotroph gaining energy by oxidation of sulphur and sulphidic ores into sulfuric acid. Its type strain is Kra 23. It has many uses that take advantage of its ability to grow on metal media under acidic and hot environments.
Thermotoga naphthophila is a hyperthermophilic, anaerobic, non-spore-forming, rod-shaped fermentative heterotroph, with type strain RKU-10T.
Acidilobus aceticus is a thermoacidophilic species of anaerobic archaea. The species was originally described in 2000 after being isolated from hot springs in Kamchatka. It is the type species of the genus Acidilobus.
Thioalkalivibrio is a Gram-negative, mostly halophilic bacterial genus of the family Ectothiorhodospiraceae.
Sulfobacillus thermosulfidooxidans is a species of bacteria of the genus Sulfobacillus. It is an acidophilic, mixotrophic, moderately thermophilic, Gram-positive, sporulating facultative anaerobe. As its name suggests, it is capable of oxidizing sulfur.
Thiosocius is a genus of bacteria that lives in symbiosis with the giant shipworm Kuphus polythalamius. It contains a single species, Thiosocius teredinicola, which was isolated from the gills of the shipworm. The specific name derives from the Latin terms teredo (shipworm) and incola (dweller).
Ovaliviridae is a family of viruses of archaea that is not assigned to any higher taxonomic ranks. The family contains a single genus, Alphaovalivirus, which contains a single species, Sulfolobus ellipsoid virus 1. The linear genome of dsDNA is 23,219 bp with 172 bp inverted terminal repeats. Sulfolobus ellipsoid virus 1 was isolated from an acidic hot spring in Laguna Fumarólica, Costa Rica; the only known host is Sulfolobus sp. A20.
Chlorobium limicola is a gram negative bacterial member of green sulfur bacteria genus found in freshwater hot springs. C. limicola is a non-motile mesophile, photoautotrophic/photosynthetic strict anaerobe important to carbon, nitrogen and sulfur cycles in anoxic freshwater environments. Strain DSMZ 245 T was isolated from Gilroy Hot Spring and whole genome sequencing was accomplished. Believed to be morphologically diverse, it was determined that culturing techniques determine some characteristics like slime production and morphology. As a green sulfur bacteria, C. limicola fixes carbon via reverse TCA cycle reactions.
Sulfurisphaera tokodaii is a thermophilic archaeon of the Thermoproteota phylum. This species lives can grow as a chemoheterotroph and a lithoautotroph
References
- ↑ LPSN
- ↑ "6C Strain Passport - StrainInfo". Archived from the original on 2016-03-04. Retrieved 2013-05-30.
- ↑ Vésteinsdóttir, H; Reynisdóttir, D. B; Orlygsson, J (Jan 2011). "Thiomonas islandica sp. nov., a moderately thermophilic, hydrogen- and sulfur-oxidizing betaproteobacterium isolated from a hot spring". Int J Syst Evol Microbiol. 61 (Pt 1): 132–7. doi: 10.1099/ijs.0.015511-0 . PMID 20173005.
