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Thiomargarita namibiensis is a Gram-negative coccoid Proteobacterium, found in the ocean sediments of the continental shelf of Namibia. It is the largest bacterium ever discovered, as a rule 0.1–0.3 mm (100–300 μm) in diameter, but sometimes attaining 0.75 mm (750 μm). Cells of Thiomargarita namibiensis are large enough to be visible to the naked eye. Although the species holds the record for the largest known bacterium, Epulopiscium fishelsoni – previously discovered in the gut of surgeonfish – grows slightly longer, but narrower.
Thiomargarita is a genus which includes the vacuolate sulfur bacteria species Thiomargarita namibiensis, Candidatus Thiomargarita nelsonii, and Ca. Thiomargarita joergensii.
Chloroflexus aurantiacus is a photosynthetic bacterium isolated from hot springs, belonging to the green non-sulfur bacteria. This organism is thermophilic and can grow at temperatures from 35 °C to 70 °C. Chloroflexus aurantiacus can survive in the dark if oxygen is available. When grown in the dark, Chloroflexus aurantiacus has a dark orange color. When grown in sunlight it is dark green. The individual bacteria tend to form filamentous colonies enclosed in sheaths, which are known as trichomes.
The Planctomycetes are a phylum of widely distributed bacteria, occurring in both aquatic and terrestrial habitats. They play a considerable role in global carbon and nitrogen cycles, with many species of this phylum capable of anaerobic ammonium oxidation, also known as anammox. Many planctomycetes occur in relatively high abundance as biofilms, often associating with other organisms such as macroalgae and marine sponges.
Sulfur-reducing bacteria are microorganisms able to reduce elemental sulfur (S0) to hydrogen sulfide (H2S). These microbes use inorganic sulfur compounds as electron acceptors to sustain several activities such as respiration, conserving energy and growth, in absence of oxygen. The final product or these processes, sulfide, has a considerable influence on the chemistry of the environment and, in addition, is used as electron donor for a large variety of microbial metabolisms. Several types of bacteria and many non-methanogenic archaea can reduce sulfur. Microbial sulfur reduction was already shown in early studies, which highlighted the first proof of S0 reduction in a vibrioid bacterium from mud, with sulfur as electron acceptor and H2 as electron donor. The first pure cultured species of sulfur-reducing bacteria, Desulfuromonas acetoxidans, was discovered in 1976 and described by Pfennig Norbert and Biebel Hanno as an anaerobic sulfur-reducing and acetate-oxidizing bacterium, not able to reduce sulfate. Only few taxa are true sulfur-reducing bacteria, using sulfur reduction as the only or main catabolic reaction. Normally, they couple this reaction with the oxidation of acetate, succinate or other organic compounds. In general, sulfate-reducing bacteria are able to use both sulfate and elemental sulfur as electron acceptors. Thanks to its abundancy and thermodynamic stability, sulfate is the most studied electron acceptor for anaerobic respiration that involves sulfur compounds. Elemental sulfur, however, is very abundant and important, especially in deep-sea hydrothermal vents, hot springs and other extreme environments, making its isolation more difficult. Some bacteria – such as Proteus, Campylobacter, Pseudomonas and Salmonella – have the ability to reduce sulfur, but can also use oxygen and other terminal electron acceptors.
Beggiatoa is a genus of Gammaproteobacteria belonging the order Thiotrichales, in the Proteobacteria phylum. This genus was one of the first bacteria discovered by Russian botanist Sergei Winogradsky. During his research in Anton de Bary’s laboratory of botany in 1887, he found that Beggiatoa oxidized hydrogen sulfide (H2S) as energy source, forming intracellular sulfur droplets, oxygen is the terminal electron acceptor and CO2 is used as carbon source. Winogradsky named it in honor of the Italian doctor and botanist Francesco Secondo Beggiato. Winogradsky referred to this form of metabolism as "inorgoxidation" (oxidation of inorganic compounds), today called chemolithotrophy. These organisms live in sulfur-rich environments such as soil, both marine and freshwater, in the deep sea hydrothermal vents and in polluted marine environments. The finding represented the first discovery of lithotrophy. Two species of Beggiatoa have been formally described: the type species Beggiatoa alba and Beggiatoa leptomitoformis, the latter of which was only published in 2017. This colorless and filamentous bacterium, sometimes in association with other sulfur bacteria (for example the genus Thiothrix), can be arranged in biofilm visible at naked eye formed by very long white filamentous mate, the white color is due to the stored sulfur. Species of Beggiatoa have cells up to 200 µ in diameter and they are one of the largest prokaryotes on Earth.
Epsilonproteobacteria are a class of Proteobacteria. All species of this class are, like all Proteobacteria, Gram-negative.
Thiothrix is a genus of filamentous sulfur-oxidizing bacteria, related to the genera Beggiatoa and Thioploca. They are usually Gram-negative and rod-shaped. They form ensheathed multicellular filaments that are attached at the base, and form gonidia at their free end. The apical gonidia have gliding motility. Rosettes of the filaments are not always formed but are typical. Sulfur is deposited in invaginations within the cell membrane.
The class Gammaproteobacteria belongs to the Proteobacteria phylum and contains about 250 genera, which makes it the most genera-rich taxon of the Prokaryotes. Several medically, ecologically, and scientifically important groups of bacteria belong to this class. It is composed by all Gram-negative microbes and is the most phylogenetically and physiologically diverse class of Proteobacteria.
The Chloroflexi or Chlorobacteria are a phylum of bacteria containing isolates with a diversity of phenotypes, including members that are aerobic thermophiles, which use oxygen and grow well in high temperatures; anoxygenic phototrophs, which use light for photosynthesis ; and anaerobic halorespirers, which uses halogenated organics as electron acceptors.
Thioploca is a genus of filamentous sulphur-oxidizing bacteria which occurs along 3,000 kilometres (1,900 mi) of coast off the west of South America. Was discovered in 1907 by R. Lauterborn classified as belonging to the order Thiotrichales, part of the Gammaproteobacteria. They inhabit as well marine as freshwater environments, with vast communities present off the Pacific coast of South America and other areas with a high organic matter sedimentation and bottom waters rich in nitrate and poor in oxygen. A large vacuole occupies more than 80% of their cellular volume and is used as a storage for nitrate. This nitrate is used for the sulphur oxidation, an important characteristic of the genus. Due to their unique size in diameters, ranging from 15-40 µm, they are considered part of the largest bacteria known. Because they use both sulfur and nitrogen compounds they may provide an important link between the nitrogen and sulphur cycles. They secrete a sheath of mucus which they use as a tunnel to travel between the sulfide containing sediment and the nitrate containing sea water.
Bacterial phyla constitute the major lineages of the domain Bacteria. While the exact definition of a bacterial phylum is debated, a popular definition is that a bacterial phylum is a monophyletic lineage of bacteria whose 16S rRNA genes share a pairwise sequence identity of ~75% or less with those of the members of other bacterial phyla.
Chloroflexus aggregans is a thermophilic, filamentous, phototrophic bacterium that forms dense cell aggregates. Its type strain is strain MD-66.
Thioploca araucae is a marine thioploca from the benthos of the Chilean continental shelf. It is a colonial, multicellular, gliding trichomes of similar diameter enclosed by a shared sheath. It possesses cellular sulfur inclusions located in a thin peripheral cytoplasm surrounding a large, central vacuole. It is a motile organism through gliding. The trichome diameters of Thioploca araucae range from 30 to 43 μm.
Cable bacteria are filamentous bacteria that conduct electricity across distances over 1 cm in sediment and groundwater aquifers. Cable bacteria allow for long distance electron transport, which connects electron donors to electron acceptors, connecting previously separated oxidation and reduction reactions. Cable bacteria couple the reduction of oxygen or nitrate at the sediment's surface to the oxidation of sulfide in the deeper, anoxic, sediment layers.
Microbial oxidation of sulfur is the oxidation of sulfur by microorganisms to build their structural components. The oxidation of inorganic compounds is the strategy primarily used by chemolithotrophic microorganisms to obtain energy to survive, grow and reproduce. Some inorganic forms of reduced sulfur, mainly sulfide (H2S/HS−) and elemental sulfur (S0), can be oxidized by chemolithotrophic sulfur-oxidizing prokaryotes, usually coupled to the reduction of energy-rich oxygen (O2) or nitrate (NO3−). Anaerobic sulfur oxidizers include photolithoautotrophs that obtain their energy from sunlight, hydrogen from sulfide, and carbon from carbon dioxide (CO2).
Mariniflexile is a genus in the phylum Bacteroidetes (Bacteria). The various species have been recovered from sea water, sea urchins, springs, brackish water, and an oyster.
Modulibacteria is a bacterial phylum formerly known as KS3B3 or GN06. It is a candidate phylum, meaning there are no cultured representatives of this group. Members of the Modulibacteria phylum are known to cause fatal filament overgrowth (bulking) in high-rate industrial anaerobic wastewater treatment bioreactors.
Cytophagales is an order of non-spore forming, rod-shaped, Gram-negative bacteria that move through a gliding or flexing motion. These chemoorganotrophs are important remineralizers of organic materials into micronutrients. They are widely dispersed in the environment, found in ecosystems including soil, freshwater, seawater and sea ice. Cytophagales is included in the Bacteroidetes phylum.
Cyanobacteria are a large and diverse phylum of bacteria defined by their unique combination of pigments and their ability to perform oxygenic photosynthesis.
References
- ↑ Maier, S.; Gallardo, V. A. (1984). "Thioploca araucae sp. nov. and Thioploca chileae sp. nov". International Journal of Systematic Bacteriology. 34 (4): 414–418. doi: 10.1099/00207713-34-4-414 . ISSN 0020-7713.
