ARF6

ARF6
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1E0S, 2A5D, 2A5F, 2A5G, 2BAO, 2BAU, 2J5X, 2W83, 3LVQ, 3LVR, 4FME, 3N5C, 3PCR, 4KAX
Identifiers
Aliases	ARF6 , ADP-ribosylation factor 6, ADP ribosylation factor 6
External IDs	OMIM: 600464 MGI: 99435 HomoloGene: 1256 GeneCards: ARF6
Gene location (Human) Chr. Chromosome 14 (human) [1] Band 14q21.3 Start 49,893,079 bp [1] End 49,897,054 bp [1]
Gene location (Mouse) Chr. Chromosome 12 (mouse) [2] Band 12|12 C2 Start 69,418,924 bp [2] End 69,420,557 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in cavity of mouth amniotic fluid human penis vulva germinal epithelium cancellous bone parietal pleura visceral pleura palpebral conjunctiva jejunal mucosa Top expressed in conjunctival fornix cumulus cell hair follicle Paneth cell condyle endocardial cushion seminal vesicula semi-lunar valve motor neuron fossa More reference expression data BioGPS More reference expression data
Gene ontology Molecular function nucleotide binding protein N-terminus binding GTP binding protein binding GTPase activity thioesterase binding Cellular component cytoplasm recycling endosome endosome Golgi apparatus cell projection membrane focal adhesion ruffle myelin sheath plasma membrane endocytic vesicle intracellular anatomical structure cell cortex early endosome endosome membrane extracellular exosome filopodium membrane recycling endosome membrane cleavage furrow cytosol Flemming body early endosome membrane presynapse glutamatergic synapse Biological process establishment of epithelial cell polarity cell differentiation regulation of filopodium assembly positive regulation of actin filament polymerization ruffle organization small GTPase mediated signal transduction regulation of Rac protein signal transduction nervous system development negative regulation of dendrite development cell division negative regulation of receptor-mediated endocytosis cell adhesion protein localization to cell surface protein transport protein localization to endosome cell cycle liver development myeloid cell apoptotic process cortical actin cytoskeleton organization vesicle-mediated transport regulation of dendritic spine development hepatocyte apoptotic process transport positive regulation of protein localization to plasma membrane intracellular protein transport regulation of neuron projection development endocytic recycling synaptic vesicle endocytosis positive regulation of keratinocyte migration ruffle assembly maintenance of postsynaptic density structure positive regulation of adherens junction organization regulation of presynapse assembly cellular response to nerve growth factor stimulus negative regulation of protein localization to cell surface positive regulation of protein secretion positive regulation of protein homodimerization activity Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 382 11845 Ensembl ENSG00000165527 ENSMUSG00000044147 UniProt P62330 P62331 RefSeq (mRNA) NM_001663 NM_007481 RefSeq (protein) NP_001654 NP_031507 Location (UCSC) Chr 14: 49.89 – 49.9 Mb Chr 12: 69.42 – 69.42 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

ADP-ribosylation factor 6 (ARF6) is a member of the ADP ribosylation factor family of GTP-binding proteins. ARF6 has a variety of cellular functions that are frequently involved in trafficking of biological membranes and transmembrane protein cargo. ARF6 has specifically been implicated in endocytosis of plasma membrane proteins and also, to a lesser extent, plasma membrane protein recycling.

Function

This gene encodes a member of the human ARF gene family, which is part of the Ras superfamily. The ARF genes encode small guanine nucleotide-binding proteins that stimulate the ADP-ribosyltransferase activity of cholera toxin and play a role in vesicular trafficking and as activators of phospholipase D. The product of this gene is localized to the plasma membrane, and regulates vesicular trafficking, remodelling of membrane lipids, and signaling pathways that lead to actin remodeling. A pseudogene of this gene is located on chromosome 7. ^[5]

ARF6 can interact with βarrestin upon receptor activation.

Interactions

ARF6 has been shown to interact with:

• ARRB1 ^[6]
• ARFIP2 ^{[7] [8]}
• CHRM3 ^[9]
• EXOC5 ^[10]
• KIAA0090 ^[11]
• Rac1 ^[12]

References

1. GRCh38: Ensembl release 89: ENSG00000165527 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000044147 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Entrez Gene: ARF6 ADP-ribosylation factor 6".
6. Claing A, Chen W, Miller WE, Vitale N, Moss J, Premont RT, Lefkowitz RJ (November 2001). "beta-Arrestin-mediated ADP-ribosylation factor 6 activation and beta 2-adrenergic receptor endocytosis". J. Biol. Chem. 276 (45): 42509–13. doi: 10.1074/jbc.M108399200 . PMID   11533043.
7. D'Souza-Schorey C, Boshans RL, McDonough M, Stahl PD, Van Aelst L (September 1997). "A role for POR1, a Rac1-interacting protein, in ARF6-mediated cytoskeletal rearrangements". EMBO J. 16 (17): 5445–54. doi:10.1093/emboj/16.17.5445. PMC   1170175 . PMID   9312003.
8. Shin OH, Exton JH (August 2001). "Differential binding of arfaptin 2/POR1 to ADP-ribosylation factors and Rac1". Biochem. Biophys. Res. Commun. 285 (5): 1267–73. doi:10.1006/bbrc.2001.5330. PMID   11478794.
9. Mitchell R, Robertson DN, Holland PJ, Collins D, Lutz EM, Johnson MS (September 2003). "ADP-ribosylation factor-dependent phospholipase D activation by the M3 muscarinic receptor". J. Biol. Chem. 278 (36): 33818–30. doi: 10.1074/jbc.M305825200 . PMID   12799371.
10. Prigent M, Dubois T, Raposo G, Derrien V, Tenza D, Rossé C, Camonis J, Chavrier P (December 2003). "ARF6 controls post-endocytic recycling through its downstream exocyst complex effector". J. Cell Biol. 163 (5): 1111–21. doi:10.1083/jcb.200305029. PMC   2173613 . PMID   14662749.
11. Prieto C, De Las Rivas J (July 2006). "APID: Agile Protein Interaction DataAnalyzer". Nucleic Acids Res. 34 (Web Server issue): W298–302. doi:10.1093/nar/gkl128. PMC   1538863 . PMID   16845013. Archived from the original on 2010-04-09.
12. Peru y Colón de Portugal RL, Acevedo SF, Rodan AR, Chang LY, Eaton BA, Rothenfluh A (December 2012). "Adult neuronal Arf6 controls ethanol-induced behavior with Arfaptin downstream of Rac1 and RhoGAP18B". J. Neurosci. 32 (49): 17706–13. doi:10.1523/JNEUROSCI.1944-12.2012. PMC   3535434 . PMID   23223291.

Further reading

• Sabe H (2004). "Requirement for Arf6 in cell adhesion, migration, and cancer cell invasion". J. Biochem. 134 (4): 485–9. doi:10.1093/jb/mvg181. PMID   14607973.
• Joseph AM, Kumar M, Mitra D (2005). "Nef: "necessary and enforcing factor" in HIV infection". Curr. HIV Res. 3 (1): 87–94. doi:10.2174/1570162052773013. PMID   15638726.
• Tsuchiya M, Price SR, Tsai SC, Moss J, Vaughan M (1991). "Molecular identification of ADP-ribosylation factor mRNAs and their expression in mammalian cells". J. Biol. Chem. 266 (5): 2772–7. doi: 10.1016/S0021-9258(18)49913-9 . PMID   1993656.
• Stearns T, Willingham MC, Botstein D, Kahn RA (1990). "ADP-ribosylation factor is functionally and physically associated with the Golgi complex". Proc. Natl. Acad. Sci. U.S.A. 87 (3): 1238–42. Bibcode:1990PNAS...87.1238S. doi: 10.1073/pnas.87.3.1238 . PMC   53446 . PMID   2105501.
• D'Souza-Schorey C, Stahl PD (1995). "Myristoylation is required for the intracellular localization and endocytic function of ARF6". Exp. Cell Res. 221 (1): 153–9. doi:10.1006/excr.1995.1362. PMID   7589240.
• D'Souza-Schorey C, Li G, Colombo MI, Stahl PD (1995). "A regulatory role for ARF6 in receptor-mediated endocytosis". Science. 267 (5201): 1175–8. Bibcode:1995Sci...267.1175D. doi:10.1126/science.7855600. PMID   7855600. S2CID   23249341.
• Welsh CF, Moss J, Vaughan M (1995). "ADP-ribosylation factors: a family of approximately 20-kDa guanine nucleotide-binding proteins that activate cholera toxin". Mol. Cell. Biochem. 138 (1–2): 157–66. doi:10.1007/BF00928458. PMID   7898460. S2CID   42819002.
• Amor JC, Harrison DH, Kahn RA, Ringe D (1995). "Structure of the human ADP-ribosylation factor 1 complexed with GDP". Nature. 372 (6507): 704–8. doi:10.1038/372704a0. PMID   7990966. S2CID   4362056.
• Orcl L, Palmer DJ, Amherdt M, Rothman JE (1993). "Coated vesicle assembly in the Golgi requires only coatomer and ARF proteins from the cytosol". Nature. 364 (6439): 732–4. Bibcode:1993Natur.364..732O. doi:10.1038/364732a0. PMID   8355790. S2CID   4348442.
• Helms JB, Palmer DJ, Rothman JE (1993). "Two distinct populations of ARF bound to Golgi membranes". J. Cell Biol. 121 (4): 751–60. doi:10.1083/jcb.121.4.751. PMC   2119793 . PMID   8491770.
• Cavenagh MM, Whitney JA, Carroll K, Zhang Cj, Boman AL, Rosenwald AG, Mellman I, Kahn RA (1996). "Intracellular distribution of Arf proteins in mammalian cells. Arf6 is uniquely localized to the plasma membrane". J. Biol. Chem. 271 (36): 21767–74. doi: 10.1074/jbc.271.36.21767 . PMID   8702973.
• D'Souza-Schorey C, Boshans RL, McDonough M, Stahl PD, Van Aelst L (1997). "A role for POR1, a Rac1-interacting protein, in ARF6-mediated cytoskeletal rearrangements". EMBO J. 16 (17): 5445–54. doi:10.1093/emboj/16.17.5445. PMC   1170175 . PMID   9312003.
• Frank S, Upender S, Hansen SH, Casanova JE (1998). "ARNO is a guanine nucleotide exchange factor for ADP-ribosylation factor 6". J. Biol. Chem. 273 (1): 23–7. doi: 10.1074/jbc.273.1.23 . PMID   9417041.
• Yang CZ, Heimberg H, D'Souza-Schorey C, Mueckler MM, Stahl PD (1998). "Subcellular distribution and differential expression of endogenous ADP-ribosylation factor 6 in mammalian cells". J. Biol. Chem. 273 (7): 4006–11. doi: 10.1074/jbc.273.7.4006 . PMID   9461590.
• Mao M, Fu G, Wu JS, Zhang QH, Zhou J, Kan LX, Huang QH, He KL, Gu BW, Han ZG, Shen Y, Gu J, Yu YP, Xu SH, Wang YX, Chen SJ, Chen Z (1998). "Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning". Proc. Natl. Acad. Sci. U.S.A. 95 (14): 8175–80. Bibcode:1998PNAS...95.8175M. doi: 10.1073/pnas.95.14.8175 . PMC   20949 . PMID   9653160.
• Andreev J, Simon JP, Sabatini DD, Kam J, Plowman G, Randazzo PA, Schlessinger J (1999). "Identification of a new Pyk2 target protein with Arf-GAP activity". Mol. Cell. Biol. 19 (3): 2338–50. doi:10.1128/MCB.19.3.2338. PMC   84026 . PMID   10022920.
• Radhakrishna H, Al-Awar O, Khachikian Z, Donaldson JG (1999). "ARF6 requirement for Rac ruffling suggests a role for membrane trafficking in cortical actin rearrangements". J. Cell Sci. 112 (6): 855–66. doi:10.1242/jcs.112.6.855. PMID   10036235.
• Kim HS (1999). "Assignment of the human ADP-ribosylation factor 6 (ARF6) gene to chromosome 7q22.1 by radiation hybrid mapping". Cytogenet. Cell Genet. 84 (1–2): 94. doi:10.1159/000015225. PMID   10343114. S2CID   31452287.
• Langille SE, Patki V, Klarlund JK, Buxton JM, Holik JJ, Chawla A, Corvera S, Czech MP (1999). "ADP-ribosylation factor 6 as a target of guanine nucleotide exchange factor GRP1". J. Biol. Chem. 274 (38): 27099–104. doi: 10.1074/jbc.274.38.27099 . PMID   10480924.
• Honda A, Nogami M, Yokozeki T, Yamazaki M, Nakamura H, Watanabe H, Kawamoto K, Nakayama K, Morris AJ, Frohman MA, Kanaho Y (1999). "Phosphatidylinositol 4-phosphate 5-kinase alpha is a downstream effector of the small G protein ARF6 in membrane ruffle formation". Cell. 99 (5): 521–32. doi: 10.1016/S0092-8674(00)81540-8 . PMID   10589680.
• Ikeda S, Ushio-Fukai M, Zuo L, Tojo T, Dikalov S, Patrushev NA, Alexander RW (2005). "Novel role of ARF6 in vascular endothelial growth factor-induced signaling and angiogenesis". Circ. Res. 96 (4): 467–75. doi: 10.1161/01.RES.0000158286.51045.16 . PMID   15692085.

External links

• ARF6+protein,+human at the U.S. National Library of Medicine Medical Subject Headings (MeSH)
• Human ARF6 genome location and ARF6 gene details page in the UCSC Genome Browser .