Dabie bandavirus

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Dabie bandavirus
Virus classification Red Pencil Icon.png
(unranked): Virus
Realm: Riboviria
Kingdom: Orthornavirae
Phylum: Negarnaviricota
Class: Ellioviricetes
Order: Bunyavirales
Family: Phenuiviridae
Genus: Bandavirus
Species:
Dabie bandavirus
Synonyms [1]
  • SFTS virus
  • SFTS phlebovirus
  • Dabie mountain virus
  • SFTS bunyavirus
  • Huaiyangshan banyangvirus

Dabie bandavirus, also called SFTS virus, is a tick-borne virus in the genus Bandavirus in the family Phenuiviridae , order Bunyavirales . [2] The clinical condition it caused is known as severe fever with thrombocytopenia syndrome (SFTS). [2] SFTS is an emerging infectious disease that was first described in northeast and central China 2009 and now has also been discovered in Japan, South Korea, Vietnam and Taiwan in 2015. SFTS has a fatality rate of 12% and as high as over 30% in some areas. The major clinical symptoms of SFTS are fever, vomiting, diarrhea, multiple organ failure, thrombocytopenia (low platelet count), leukopenia (low white blood cell count) and elevated liver enzyme levels. Another outbreak occurred in East China in the early half of 2020.

Contents

History

In 2009, Xue-jie Yu and colleagues isolated the SFTS virus (SFTSV) from SFTS patients’ blood. [2]

Genome

The genome has been sequenced. [2] There are three segments—large (L), medium (M) and small (S). Five proteins have been identified—an RNA dependent RNA polymerase (RdRp), a glycoprotein N (Gn), a glycoprotein C (Gc), a nuclear protein (NP) and a non structural protein (NSs).[ citation needed ]

The L segment encodes the RNA polymerase with 2084 amino acid residues.[ citation needed ]

The M segment encodes one open reading frame encoding 1073 amino acid precursors of glycoproteins (Gn and Gc).[ citation needed ]

The S segment has 1746 nucleotides of ambisense RNA encoding two proteins, the N and NSs proteins. These lie in opposite orientations and are separated by a 54 nucleotide intergenic region. [3]

Evolution

Five genotypes (A–E) have been identified. [4] Strains from China could be grouped into all five genotypes while isolates from South Korea lay in three (types A, D and E) and those from Japan only in one (type E). The virus appears to have originated in the Dabie Mountains in central China between 1918 and 1995.[ citation needed ]

Among bunyaviruses, it appears to be more closely related to the Uukuniemi virus serogroup than to the Sandfly fever group. [2] It is a member of the Bhanja virus serocomplex. [5]

Life cycle

SFTSV is a tick-borne virus; it is not clear whether it can be transmitted by other blood-sucking arthropods. [6] It can infect many mammalian hosts, including cats, mice, hedgehogs, weasels, brushtail possums and yaks. Humans appear to be accidental hosts, and play no essential role in the life cycle of SFTSV. SFTSV has been detected from the ixodid tick, Haemaphysalis longicornis , Ixodes nipponensis , Amblyomma testudinarium [7] and Rhipicephalus microplus . [8] In addition to tick bite, SFTSV can be transmitted from person to person through contact with blood or mucus of an infected person. [9] [10]

Epidemiology

This virus has been found in the Chinese provinces of Anhui, Henan, Hubei, Jiangsu, Liaoning and Shandong. SFTS occurs in rural areas, from March to November, and a majority of cases are found from April to July.[ citation needed ]

The virus has also been found in South Korea, Japan, Vietnam and Taiwan. [11] [12] [13]

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Amur virus (AMRV) is a zoonotic negative-sense single-stranded RNA virus. It may be a member of the genus Orthohantavirus, but it has not be definitively classified as a species and may only be a strain. It has been identified as a causative agent of hemorrhagic fever with renal syndrome.

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Batai orthobunyavirus (BATV) is a RNA virus belonging to order Bunyavirales, genus Orthobunyavirus.

Cache Valley orthobunyavirus (CVV) is a member of the order Bunyavirales, genus Orthobunyavirus, and serogroup Bunyamwera, which was first isolated in 1956 from Culiseta inornata mosquitos collected in Utah's Cache Valley. CVV is an enveloped arbovirus, nominally 80–120 nm in diameter, whose genome is composed of three single-stranded, negative-sense RNA segments. The large segment of related bunyaviruses is approximately 6800 bases in length and encodes a probable viral polymerase. The middle CVV segment has a 4463-nucleotide sequence and the smallest segment encodes for the nucleocapsid, and a second non-structural protein. CVV has been known to cause outbreaks of spontaneous abortion and congenital malformations in ruminants such as sheep and cattle. CVV rarely infects humans, but when they are infected it has caused encephalitis and multiorgan failure.

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References

  1. "ICTV Taxonomy history: Dabie bandavirus". International Committee on Taxonomy of Viruses (ICTV). Retrieved 6 August 2020.
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  3. Brennan, Benjamin; Rezelj, Veronica V.; Elliott, Richard M. (15 August 2017). "Mapping of Transcription Termination within the S Segment of SFTS Phlebovirus Facilitated Generation of NSs Deletant Viruses". Journal of Virology. 91 (16): 1–18. doi: 10.1128/JVI.00743-17 . PMC   5533932 . PMID   28592543.
  4. Liu JW, Zhao L, Luo LM, Liu MM, Sun Y, Su X, Yu XJ (2016). "Molecular Evolution and Spatial Transmission of Severe Fever with Thrombocytopenia Syndrome Virus Based on Complete Genome Sequences". PLOS ONE. 11 (3): e0151677. Bibcode:2016PLoSO..1151677L. doi: 10.1371/journal.pone.0151677 . PMC   4801363 . PMID   26999664.
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