Achromobacter xylosoxidans | |
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Scientific classification | |
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Species: | A. xylosoxidans |
Binomial name | |
Achromobacter xylosoxidans Yabuuchi and Yano 1981 [1] | |
Type strain | |
ATCC 27061, BCRC 12839, CCM 2741, CCRC 12839, CCTM La 3521, CCUG 12689, CDC KC 1064, CDCKC1064, CECT 467 = Colección Española de Cultivos, CECT 927, CGMCC 1.2007, CIP 71.32, DSM 10346, DSM 2402, DSMZ 10346, DSMZ 2402, EY 543, GIFL 543, GIFU 543, Hugh 2838, IAM 12684, IFO 15126, IMD 101001, JCM 9659, KACC 10205, KM 543, LMG 1863, NBRC 15126, NCIB 12033, NCIMB 12033, NCTC 1 O807, NCTC 10807, NRRL 84082, NRRL B-4082, NXRX 10807, PCM 2222, R-16924, R. Hugh 2838, R.Hugh 2838, RH 2838, RIMD 101001, strain KM 543, strain Takeda, VTT E-991282 Yabuuchi KM 543 [2] |
Achromobacter xylosoxidans (formerly Alcaligenes xylosoxidans) is a Gram-negative, aerobic, oxidase and catalase-positive, motile bacterium with peritrichous flagella, from the genus Achromobacter . It is generally found in wet environments. Achromobacter xylosoxidans can cause infections such as bacteremia, [3] [4] especially in patients with cystic fibrosis. [5] In 2013, the complete genome of an A. xylosoxidans strain from a patient with cystic fibrosis was sequenced. [6]
A. xylosoxidans is a Gram-negative rod that does not form spores. It is motile, with peritrichous flagella that distinguish it from Pseudomonas species, and is oxidase-positive, catalase-positive, and citrate-positive. It is urease and indole-negative. It produces acid oxidatively from xylose, but not from lactose, maltose, mannitol, or sucrose. It grows well on MacConkey agar and other inhibitory growth media such as deoxycholate, Salmonella-Shigella, and nalidixic acid-cetrimide agars. [3] [7] [8]
It is usually resistant to a variety of antibiotics including penicillins, cephalosporins, quinolones, and aminoglycosides. Ampicillin and carbenicillin, which are penicillins, are an exception. It is variably susceptible to tetracyclines, chloramphenicol, trimethoprim-sulfamethoxazole, and colistin. [7]
Originally isolated from patients with otitis media, [7] A. xylosoxidans has since been periodically described as a pathogen of humans. In addition to otitis, it can cause a variety of other infections, including pneumonia, pharyngitis, peritonitis in association with catheters used for peritoneal dialysis, and urinary tract infections. [3] [9] Infection is sometimes associated with underlying immunodeficiency, including immunoglobulin M deficiency, various cancer chemotherapies, inhaled steroids, surgical procedures, prolonged or broad-spectrum antimicrobial treatment for other infections, [3] and cystic fibrosis. [5] It has also been the cause of hospital-acquired infections. [9]
Haemophilus influenzae is a Gram-negative, non-motile, coccobacillary, facultatively anaerobic, capnophilic pathogenic bacterium of the family Pasteurellaceae. The bacteria are mesophilic and grow best at temperatures between 35 and 37 °C.
Proteus mirabilis is a Gram-negative, facultatively anaerobic, rod-shaped bacterium. It shows swarming motility and urease activity. P. mirabilis causes 90% of all Proteus infections in humans. It is widely distributed in soil and water. Proteus mirabilis can migrate across the surface of solid media or devices using a type of cooperative group motility called swarming. Proteus mirabilis is most frequently associated with infections of the urinary tract, especially in complicated or catheter-associated urinary tract infections.
Moraxella catarrhalis is a fastidious, nonmotile, Gram-negative, aerobic, oxidase-positive diplococcus that can cause infections of the respiratory system, middle ear, eye, central nervous system, and joints of humans. It causes the infection of the host cell by sticking to the host cell using trimeric autotransporter adhesins.
Burkholderia cepacia complex (BCC) is a species complex consisting of Burkholderia cepacia and at least 20 different biochemically similar species of Gram-negative bacteria. They are catalase-producing and lactose-nonfermenting. Members of BCC are opportunistic human pathogens that most often cause pneumonia in immunocompromised individuals with underlying lung disease. Patients with sickle-cell haemoglobinopathies are also at risk. The species complex also attacks young onion and tobacco plants, and displays a remarkable ability to digest oil.
Stenotrophomonas maltophilia is an aerobic, nonfermentative, Gram-negative bacterium. It is an uncommon bacterium and human infection is difficult to treat. Initially classified as Bacterium bookeri, then renamed Pseudomonas maltophilia, S. maltophilia was also grouped in the genus Xanthomonas before eventually becoming the type species of the genus Stenotrophomonas in 1993.
Streptococcus bovis is a group of strains of Gram-positive bacteria, originally described as a species, that in humans is associated with urinary tract infections, endocarditis, sepsis, and colorectal cancer. S. bovis is commonly found in the alimentary tract of cattle, sheep, and other ruminants, and may cause ruminal acidosis. It is also associated with spontaneous bacterial peritonitis, a frequent complication occurring in patients affected by cirrhosis. Equivalence with Streptococcus equinus has been contested.
Alcaligenes is a genus of Gram-negative, aerobic, rod-shaped bacteria in the order of Burkholderiales.
Elizabethkingia meningoseptica is a Gram-negative, rod-shaped bacterium widely distributed in nature. It may be normally present in fish and frogs; it may be isolated from chronic infectious states, as in the sputum of cystic fibrosis patients. In 1959, American bacteriologist Elizabeth O. King was studying unclassified bacteria associated with pediatric meningitis at the Centers for Disease Control and Prevention in Atlanta, when she isolated an organism that she named Flavobacterium meningosepticum. In 1994, it was reclassified in the genus Chryseobacterium and renamed Chryseobacterium meningosepticum(chryseos = "golden" in Greek, so Chryseobacterium means a golden/yellow rod similar to Flavobacterium). In 2005, a 16S rRNA phylogenetic tree of Chryseobacteria showed that C. meningosepticum along with C. miricola were close to each other but outside the tree of the rest of the Chryseobacteria and were then placed in a new genus Elizabethkingia named after the original discoverer of F. meningosepticum.
Mycobacteroides abscessus is a species of rapidly growing, multidrug-resistant, nontuberculous mycobacteria (NTM) that is a common soil and water contaminant. Although M. abscessus most commonly causes chronic lung infection and skin and soft tissue infection (SSTI), it can also cause infection in almost all human organs, mostly in patients with suppressed immune systems. Amongst NTM species responsible for disease, infection caused by M. abscessus complex are more difficult to treat due to antimicrobial drug resistance.
Delftia acidovorans is a Gram-negative, motile, non-sporulating, rod-shaped bacterium known for its ability to biomineralize gold and bioremediation characteristics. It was first isolated from soil in Delft, Netherlands. The bacterium was originally categorized as Pseudomonas acidovorans and Comamonas acidovorans before being reclassified as Delftia acidovorans.
Morganella morganii is a species of Gram-negative bacteria. It has a commensal relationship within the intestinal tracts of humans, mammals, and reptiles as normal flora. Although M. morganii has a wide distribution, it is considered an uncommon cause of community-acquired infection, and it is most often encountered in postoperative and other nosocomial infections, such as urinary tract infections.
Streptococcus constellatus is a species of Streptococcus bacteria that is part of the normal flora in the oral cavity, urogenital region, and intestinal tract. However, it can frequently cause purulent infections in other parts of the body. DNA homology studies and 16S rRNA sequence analysis demonstrate S. constellatus belongs to the Streptococcus anginosus group along with Streptococcus intermedius and Streptococcus anginosus.
Lautropia mirabilis is a Gram-negative, facultatively anaerobic, oxidase- and catalase-positive, motile bacterium of the genus Lautropia and family Burkholderiaceae, isolated from the mouth of children who were infected with human immunodeficiency virus.
Pandoraea apista is a Gram-negative, catalase-positive, aerobic, non-spore-forming, motile bacterium with a single polar flagellum, of the genus Pandoraea. The Strain CCUG 38412 was isolated from the sputum of a cystic fibrosis patient in Denmark. Pandoraea apista can cause lung disease, such as chronic lung infections, in patients who suffer from cystic fibrosis.
Achromobacter denitrificans is a Gram-negative, oxidase- and catalase-positive, strictly aerobic, ubiquitous, motile bacterium with peritrichous flagella from the genus Achromobacter which was isolated from soil and can cause human infections.
Alcaligenes aaquatilis is a Gram-negative, catalase- and cytochrome oxidase-positive, motile bacterium with peritrichous flagella, from the genus Alcaligenes, which was isolated in Germany from sediments of the Weser Estuary and in Shem Creek in Charleston Harbor in the United States from a salt marsh. A complete genome sequence of A. aquatilis is publicly available in DNA Data Bank of Japan, European Nucleotide Archive, and GenBank.
Bordetella trematum is a species of Gram-negative bacteria identified in 1996 by comparison of 10 strains of B. trematum against other well characterized Bordetella and Alcaligenes species. The term trema refers to something pierced or penetrated, or to a gap. "Trematum" pertains to open things, and refers to the presence of bacteria in wounds and other exposed parts of the body. Strain LMG 13506T is the reference strain for this species.
Anaerococcus is a genus of bacteria. Its type species is Anaerococcus prevotii. These bacteria are Gram-positive and strictly anaerobic. The genus Anaerococcus was proposed in 2001. Its genome was sequenced in August 2009. The genus Anaerococcus is one of six genera classified within the group GPAC. These six genera are found in the human body as part of the commensal human microbiota.
Bilophila wadsworthia is a Gram-negative, obligately anaerobic, catalase-positive, bile-resistant, and asaccharolytic bacillus. Approximately 75% of B. wadsworthia strains are urease positive. B. wadsworthia is linked to various diseases and is not well known due to frequent misidentification of the bacteria, and the National Center for Biotechnology Information is including it the phylum of Proteobacteria. The two unique characteristics of B. wadsworthia are the utilisation of the sulfated amino acid taurine in the production of hydrogen sulfide and the rapid catalase reaction. This bacterium is susceptible to the β-lactam antibiotics imipenem, cefoxitin, and ticarcillin.
Neisseria animaloris, formerly named CDC group EF-4a, is a gram-negative coccoid rod. The bacterium is a commensal of the upper respiratory tract of cats and dogs, and they may cause pulmonary infections in cat. In humans Neisseria animaloris have been reported to cause wound infection after animal bites but also chronic otitis media, bacteremia and endophtalmitis.