List of sequenced bacterial genomes

This list of sequenced eubacterial genomes contains most of the eubacteria known to have publicly available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration, a public database which can be searched ^[1] on the web. A few of the listed genomes may not be in the INSDC database, but in other public databases^{[ verification needed ]}.

Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed scientific literature.

For the genomes of archaea see list of sequenced archaeal genomes.

Abditibacteriota

Species	Strain	Type	Base Pairs	Genes	Reference	GenBank Identifier
Abditibacterium utsteinense	LMG 29911	Abditibacteriota	3,606,330	3,240	2018 [2]	NZ_NIGF00000000.1

Actinomycetota

Species	Strain	Type	Base Pairs	Genes	Reference	GenBank Identifier
Corynebacterium diphtheriae	C7 (beta)	Actinobacteridae	2,499,189		Unpublished	CP003210
Corynebacterium diphtheriae	PW8	Actinobacteridae	2,530,683		Unpublished	CP003216
Bifidobacterium longum	NCC2705	Actinobacteria	2,256,640	1,727	2002 [3]
Corynebacterium diphtheriae	NCTC13129	Actinobacteria	2,488,635	2,320	2003 [4]
Corynebacterium efficiens	YS314	Actinobacteria	3,147,090	2,942	2003 [5]
Corynebacterium glutamicum	ATCC13032	Actinobacteria	3,309,401	3,099	Unpublished [1]
Corynebacterium jeikeium	K411	Actinobacteria	2,462,499	2,104	2005 [6]
Frankia species	CcI3	Actinobacteria	5,433,628	4,499	Unpublished [1]
Mycobacterium avium	k10	Actinobacteria	4,829,781	4,350	2005 [7]
Mycobacterium bovis	AF212297	Actinobacteria	4,345,492	3,953	2003 [8]
Mycobacterium leprae	TN	Actinobacteria	3,268,203	2,720	2001 [9]
Mycobacterium tuberculosis	CDC1551	Actinobacteria	4,403,837	4,189	Unpublished [1]
Mycobacterium tuberculosis	H37Rv	Actinobacteria	4,411,532	3,999	1998 [10]
Nocardia farcinica	IFM10152	Actinobacteria	6,021,225	5,683	2004 [11]
Streptomyces avermitilis	MA4680	Actinobacteria	9,025,608	7,577	2001 [12]
Streptomyces coelicolor	A3	Actinobacteria	8,667,507	7,825	1996 [13]
Symbiobacterium thermophilum	Strain	Actinobacteria	3,566,135	3,337	2004 [14]
Thermobifida fusca	YX	Actinobacteria	3,642,249	3,110	Unpublished [1]

Aquificota

Species	Strain	Type	Base Pairs	Genes	Reference	GenBank Identifier
Aquifex aeolicus	VF5	Aquificae	1,551,335	1,522	1998 [15]	Chromosome NC_000918 Plasmid ece1 NC_001880

Bacteroidota/Chlorobiota group

Species	Strain	Type	Base Pairs	Genes	Reference	GenBank Identifier
Bacteroides fragilis	NCTC9343	Bacteroidota	5,205,140	4,260	2005 [16]	Chromosome CR626927 Plasmid pBF9343 CR626928
Bacteroides fragilis	YCH46	Bacteroidota	5,277,274	4,578	2004 [17]	Chromosome AP006841 Plasmid pBFY46 AP006842
Bacteroides thetaiotaomicron	VPI-5482	Bacteroidota	6,260,361	4,778	2003 [18]	Chromosome AE015928 Plasmid p5482 AY171301
Candidatus Amoebophilus asiaticus	5a2	Bacteroidota	1,884,364		2010 [19]	CP001102
Chlorobaculum parvum	NCIB 8327	Chlorobiota	2,289,249		DOE Joint Genome Institute	CP001099
Chlorobium chlorochromatii	CaD3	Chlorobiota	2,572,079	2,002	DOE Joint Genome Institute	CP000108
Chlorobium ferrooxidans	DSM 13031	Chlorobiota			DOE Joint Genome Institute	AASE00000000
Chlorobium limicola	DSM 245	Chlorobiota	2,763,181		DOE Joint Genome Institute	NC_010803
Chlorobium phaeobacteroides	BS1	Chlorobiota	2,736,403		DOE Joint Genome Institute	NC_010831
Chlorobium phaeobacteroides	DSM 266	Chlorobiota	3,133,902		DOE Joint Genome Institute	NC_008639
Chlorobium phaeovibrioides	DSM 265	Chlorobiota	1,966,858		DOE Joint Genome Institute	NC_009337
Chlorobium tepidum	TLS	Chlorobiota	2,154,946	2,255	2002 [20]	AE006470
Chloroherpeton thalassium	ATCC 35110	Chlorobiota	3,293,456		DOE Joint Genome Institute	CP001100
Cytophaga hutchinsonii	ATCC 33406	Chlorobiota	4,433,218		2007 [21]	CP000383
Haliscomenobacter hydrossis	DSM 1100	Bacteroidota	8,371,686		2011 [22]	Chromosome CP002691 Plasmid pHALHY01 CP002692 Plasmid pHALHY02 CP002693 Plasmid pHALHY03 CP002694
Ignavibacterium album	JCM 16511	Ignavibacteriota	3,658,997		University of Copenhagen	CP003418
Pelodictyon luteolum ( Chlorobium luteolum )	DSM 273	Chlorobiota	2,364,842	2,083	DOE Joint Genome Institute	CP000096
Pelodictyon phaeoclathratiforme	BU-1	Chlorobiota	3,018,238		DOE Joint Genome Institute	CP001110
Porphyromonas gingivalis	ATCC 33277	Bacteroidota	2,354,886		2008 [23]	NC_010729
Porphyromonas gingivalis	W83	Bacteroidota	2,343,476	1,909	2003 [24]	NC_002950
Prosthecochloris aestuarii	DSM 271	Chlorobiota	2,512,923		DOE Joint Genome Institute	Chromosome CP001108 Plasmid pPAES01 CP001109
Salinibacter ruber	DSM 13855	Bacteroidota	3,551,823	2,801	[25]	NC_007677
Salinibacter ruber	M8	Bacteroidota	3,619,447		[26]	Chromosome FP565814 Plasmid pSR11 FP565810 Plasmid pSR56 FP565811 Plasmid pSR61 FP565812 Plasmid pSR84 NC_014157
Saprospira grandis	str. Lewin	Bacteroidota	4,345,237		University of Hawaii at Manoa	Chromosome CP002831 Plasmid CP002832

Chlamydiota/Verrucomicrobiota group

Species	Strain	Type	Base Pairs	Genes	Reference
Akkermansia muciniphila	ATCC BAA-835	Verrucomicrobiota	2,664,102	2,176	[27]
Akkermansia muciniphila	Urmite	Verrucomicrobiota	2,664,714	2,192	[28]
Chlamydia muridarum	Nigg	Chlamydiota	1,072,950	904	[29]
Chlamydia trachomatis	AHAR13	Chlamydiota	1,044,459	911	[30]
Chlamydia trachomatis	DUW	Chlamydiota	1,042,519	894	[31]
Chlamydophila abortus	S26-3	Chlamydiota	1,144,377	961	[32]
Chlamydophila caviae	GPIC	Chlamydiota	1,173,390	998	[33]
Chlamydophila felis	FeC56	Chlamydiota	1,166,239	1,005	[34]
Chlamydophila pneumoniae	AR39	Chlamydiota	1,229,853	1,110	[29]
Chlamydophila pneumoniae	CWL029	Chlamydiota	1,230,230	1,052	[35]
Chlamydophila pneumoniae	J138	Chlamydiota	1,226,565	1,069	[36]
Chlamydophila pneumoniae	TW183	Chlamydiota	1,225,935	1,113	ALTANA Pharma
Parachlamy diaspecies	UWE25	Chlamydiota	2,414,465	2,031	[37]

Chloroflexota

Species	Strain	Type	Base Pairs	Genes	Reference
Dehalococcoides mccartyi	195	Dehalococcoidetes	1,469,720	1,580	[38]
Dehalococcoides mccartyi	CBDB1	Dehalococcoidetes	1,395,502	1,458	[39]
Dehalococcoides mccartyi	DCMB5	Dehalococcoidetes	1,431,902	1,526	[40]
Dehalococcoides mccartyi	BTF08	Dehalococcoidetes	1,452,335	1,580	[40]

Cyanobacteria

Species	Strain	Type	Base Pairs	Genes	Reference
Anabaena nostoc	PCC7120	Nostocales	6,413,771	5,368	[41]
Anabaena variabilis	ATCC29413	Nostocales	6,365,727	5,039	DOE Joint Genome Institute
Cyanobacteria bacterium	YellowstoneA	Chroococcales	2,932,766	2,760	[42]
Cyanobacteria bacterium	YellowstoneB	Chroococcales	3,046,682	2,862	[42]
Gloeobacter violaceus	PCC7421	Gloeobacteria	4,659,019	4,430	[43]
Prochlorococcus marinus	MED4	Prochlorales	1,657,990	1,716	[44]
Prochlorococcus marinus	MIT9312	Prochlorales	1,709,204	1,809	Unpublished [1]
Prochlorococcus marinus	MIT9313	Prochlorales	2,410,873	2,273	[44]
Prochlorococcus marinus	NATL2A	Prochlorales	1,842,899	1,890	Unpublished [1]
Prochlorococcus marinus	SS120	Prochlorales	1,751,080	1,882	[45]
Synechococcus elongatus	PCC6301	Chroococcales	2,696,255	2,525	Unpublished [1]
Synechococcus elongatus	PCC7942	Chroococcales	2,695,903	2,611	Unpublished [1]
Synechococcus species	WH8102	Chroococcales	2,434,428	2,526	[46]
Synechococcus species	CC9605	Chroococcales	2,510,659	2,638	Unpublished [1]
Synechococcus species	CC9902	Chroococcales	2,234,828	2,304	Unpublished [1]
Synechocystis species	PCC6803	Chroococcales	3,573,470	3,167	[47]
Thermosynechococcus elongatus	bp1	Chroococcales	2,593,857	2,475	Unpublished [1]

Deferribacterota

Species	Strain	Type	Base Pairs	Genes	Reference
Geovibrio sp.		Deferribacterota	2,971,658	2,415	DOE Joint Genome Institute
Mucispirillum schaedleri	ASF457	Deferribacterota	2,319,180	2,144	Broad Institute
Denitrovibrio acetiphilus	DSM 12809	Deferribacterota	3,222,077	3,068	[48]
Calditerrivibrio nitroreducens	DSM 19672	Deferribacterota	2,157,835	2,117	[49]
Deferribacter desulfuricans	SSM1	Deferribacterota	2,234,389	2,184	[50]
Flexistipes sinusarabici	DSM 4947	Deferribacterota	2,526,590	2,397	[51]

Deinococcota

Species	Strain	Type	Base Pairs	Genes	Reference	GenBank Identifier
Deinococcus deserti	VCD115	Deinococcales	2,819,842		[52]	Chromosome NC_012526 Plasmid 1 NC_012528 Plasmid 2 NC_012529 Plasmid 3 NC_012528
Deinococcus geothermalis	DSM 11300	Deinococcales	2,467,205	2,335	DOE Joint Genome Institute	Chromosome CP000359 Plasmid pDGEO01 CP000358 Plasmid pDGEO02 CP000856
Deinococcus gobiensis	I-0	Deinococcales	3,137,147		[53]	Chromosome CP002191 Plasmid P1 CP002192 Plasmid P2 CP002193 Plasmid P3 CP002194 Plasmid P4 CP002195 Plasmid P5 CP002196 Plasmid P6 CP002197
Deinococcus maricopensis	DSM 21211	Deinococcales	3,498,530		US DOE Joint Genome Institute	CP002454
Deinococcus proteolyticus	MRP	Deinococcales	2,147,060		US DOE Joint Genome Institute	Chromosome CP002536 Plasmid pDEIPR01 CP002537 Plasmid pDEIPR02 CP002538 Plasmid pDEIPR03 CP002539 Plasmid pDEIPR04 CP002540
Deinococcus radiodurans	R1	Deinococcales	Chromosome 1: 2,648,638 Chromosome 2: 412,348	Chromosome 1: 2,579 Chromosome 2: 357	[54]	Chromosome 1 NC_001263 Chromosome 2 NC_001264 Plasmid CP1 NC_000959 Plasmid MP1 NC_000958
Marinithermus hydrothermalis	DSM 14884	Thermales	2,269,167		DOE Joint Genome Institute	CP002630
Meiothermus ruber	DSM 1279	Thermales	3,097,457		DOE Joint Genome Institute	CP001743
Meiothermus silvanus	DSM 9946	Thermales	3,249,394		[55]	Chromosome CP002042 Plasmid pMESIL01 CP002043 Plasmid pMESIL02 CP002044
Oceanithermus profundus	DSM 14977	Thermales	2,303,940		DOE Joint Genome Institute	Chromosome CP002361 Plasmid pOCEPR01
Thermus scotoductus	SA-01	Thermales	2,346,803		[56]	Chromosome CP001962 Plasmid pTSC8 CP001963
Thermus species	CCB_US3_UF1	Thermales	2,243,772		Universiti Sains Malaysia	Chromosome CP003126 Plasmid pTCCB09 CP003127
Thermus thermophilus	HB27	Thermales	1,894,877	1,982	[57]	Chromosome AE017221 Plasmid pTT27 AE017222
Thermus thermophilus	HB8	Thermales	1,849,742	1,973	Nara Institute of Science and Technology	Chromosome NC_006461 Plasmid pTT27 NC_006462 Plasmid pTT8 NC_006463
Thermus thermophilus	JL-18	Thermales	1,902,595		DOE Joint Genome Institute	Chromosome CP003252 Plasmid pTTJL1801 CP003253 Plasmid pTTJL1802 CP003254
Thermus thermophilus	SG0.5JP17-16	Thermales	1,863,201		DOE Joint Genome Institute	Chromosome CP002777 Plasmid pTHTHE1601 CP002778
Truepera radiovictrix	DSM 17093	Deinococcales	3,260,398		DOE Joint Genome Institute	CP002049

Fibrobacterota/Acidobacteriota group

Species	Strain	Type	Base Pairs	Genes	Reference
Acidobacteria bacterium	Ellin345	Acidobacteriota	5,650,368	4,777	Unpublished [1]
Leifsonia xyli	CTCB07	Acidobacteriota	2,584,158	2,030	[58]
Propionibacterium acnes	KPA171202	Acidobacteriota	2,560,265	2,297	[59]
Rubrobacter xylanophilus	DSM9941	Acidobacteriota	3,225,748	3,140	DOE Joint Genome Institute
Tropheryma whippelii	TW08/27	Acidobacteriota	925,938	784	[60]
Tropheryma whippelii	Twist	Acidobacteriota	927,303	808	[61]

Bacillota

Species	Strain	Type	Base Pairs	Genes	Reference
Bacillus anthracis	Ames	Bacilli	5,227,293	5,311	[62]
Bacillus anthracis	Sterne	Bacilli	5,228,663	5,287	Unpublished [1]
Bacillus cereus	ATCC10987	Bacilli	5,224,283	5,603	[63]
Bacillus cereus	ATCC14579	Bacilli	5,411,809	5,234	[64]
Bacillus cereus	ZK	Bacilli	5,300,915	5,134	Unpublished [1]
Bacillus clausii	KSMK16	Bacilli	4,303,871	4,108	[65]
Bacillus halodurans	C125	Bacilli	4,202,352	4,066	[66]
Bacillus licheniformis	ATCC14580	Bacilli	4,222,334	4,152	[67]
Bacillus licheniformis	Unspecified	Bacilli	4,222,645	4,196	[68]
Bacillus licheniformis	DSM13	Bacilli	4,222,645	4,196	[68]
Bacillus subtilis	168	Bacilli	4,214,630	4,106	[69]
Bacillus thuringiensis	9727	Bacilli	5,237,682	5,117	[70]
Carboxydothermus hydrogenoformans	Z2901	Clostridia	2,401,520	2,620	[71]
Clostridium acetobutylicum	ATCC824	Clostridia	3,940,880	3,672	[72]
Clostridioides difficile	QCD-32g58	Clostridia	3,840,681		Unpublished [1]
Clostridium perfringens	13	Clostridia	3,031,430	2,660	[73]
Clostridium tetani	E88	Clostridia	2,799,251	2,373	[74]
Desulfitobacterium hafniense	Y51	Clostridia	5,727,534	5,060	[75]
Enterococcus faecalis	V583	Bacilli	3,218,031	3,113	[76]
Geobacillus kaustophilus	HTA426	Bacilli	3,544,776	3,498	[77]
Lactobacillus acetotolerans	NCFM	Bacilli
Lactobacillus acidophilus	NCFM	Bacilli	1,993,564	1,864	[78]
Lactobacillus delbrueckii	bulgaricus	Bacilli	1,864,998	2,096	Unpublished [1]
Lactobacillus johnsonii	NCC533	Bacilli	1,992,676	1,821	[79]
Lactobacillus plantarum	WCFS1	Bacilli	3,308,274	3,051	[79]
Lactobacillus sakei	23K	Bacilli	1,884,661	1,885	Unpublished [1]
Lactobacillus sakei	sakei23K	Bacilli	1,884,661	1,885	Unpublished [1]
Lactobacillus salivarius	UCC118	Bacilli	1,827,111	1,717	Unpublished [1]
Lactococcus lactis	IL1403	Bacilli	2,365,589	2,266	[80]
Listeria innocua	Clip11262	Bacilli	3,011,208	2,981	[81]
Listeria monocytogenes	EGD	Bacilli	2,944,528	2,855	[81]
Listeria monocytogenes	4b	Bacilli	2,905,187	2,821	[82]
Moorella thermoacetica	ATCC39073	Clostridia	2,628,784	2,465	Unpublished [1]
Oceanobacillus iheyensis	HTE831	Bacilli	3,630,528	3,496	[83]
Staphylococcus aureus	COL	Bacilli	2,809,422	2,673	[84]
Staphylococcus aureus	MRSA252	Bacilli	2,902,619	2,744	[85]
Staphylococcus aureus	MSSA476	Bacilli	2,799,802	2,619	[85]
Staphylococcus aureus	Mu50	Bacilli	2,878,529	2,699	[86]
Staphylococcus aureus	MW2	Bacilli	2,820,462	2,632	[87]
Staphylococcus aureus	N315	Bacilli	2,814,816	2,593	[86]
Staphylococcus aureus	NCTC8325	Bacilli	2,821,361	2,892	Unpublished [1]
Staphylococcus aureus	RF122	Bacilli	2,742,531	2,589	Unpublished [1]
Staphylococcus aureus	USA300	Bacilli	2,872,769	2,560	[88]
Staphylococcus epidermidis	ATCC12228	Bacilli	2,499,279	2,419	Unpublished [1]
Staphylococcus epidermidis	RP62A	Bacilli	2,616,530	2,494	[84]
Staphylococcus haemolyticus	JCSC1435	Bacilli	2,685,015	2,678	[89]
Staphylococcus saprophyticus	saprophyticus	Bacilli	2,516,575	2,446	[90]
Streptococcus agalactiae	A909	Bacilli	2,127,839	1,996	[91]
Streptococcus agalactiae	NEM316	Bacilli	2,211,485	2,134	[92]
Streptococcus agalactiae	2603 V/R	Bacilli	2,160,267	2,124	[93]
Streptococcus mutans	UAB159	Bacilli	2,030,921	1,960	[94]
Streptococcus pneumoniae	R6	Bacilli	2,038,615	2,043	[95]
Streptococcus pneumoniae	TIGR4	Bacilli	2,160,842	2,125	[96]
Streptococcus pyogenes	M5Manfredo	Bacilli	1,841,271		Unpublished [1]
Streptococcus pyogenes	MGAS10270	Bacilli	1,928,252	1,987	[97]
Streptococcus pyogenes	MGAS10394	Bacilli	1,899,877	1,886	[98]
Streptococcus pyogenes	MGAS10750	Bacilli	1,937,111	1,979	[97]
Streptococcus pyogenes	MGAS2096	Bacilli	1,860,355	1,898	[97]
Streptococcus pyogenes	MGAS315	Bacilli	1,900,521	1,865	[99]
Streptococcus pyogenes	MGAS5005	Bacilli	1,838,554	1,865	[100]
Streptococcus pyogenes	MGAS6180	Bacilli	1,897,573	1,894	[101]
Streptococcus pyogenes	MGAS8232	Bacilli	1,895,017	1,845	[102]
Streptococcus pyogenes	MGAS9429	Bacilli	1,836,467	1,877	[97]
Streptococcus pyogenes	SF370	Bacilli	1,852,441	1,696	[103]
Streptococcus pyogenes	SSI1	Bacilli	1,894,275	1,861	[104]
Streptococcus thermophilus	CNRZ1066	Bacilli	1,796,226	1,915	[105]
Streptococcus thermophilus	LMG18311	Bacilli	1,796,846	1,889	[105]
Thermoanaerobacter tengcongensis	MB4T	Clostridia	2,689,445	2,588	Unpublished [1]

Fusobacteriota

Species	Strain	Type	Base Pairs	Genes	Reference	GenBank Identifier
Fusobacterium nucleatum	ATCC25586	Fusobacteria	2,174,500	2,067	[106]
Fusobacterium sp.	11_3_2	Fusobacteria			Unpublished	ACUO00000000
Fusobacterium sp.	21_1A	Fusobacteria			Unpublished	ADEE00000000

Planctomycetota

Species	Strain	Type	Base Pairs	Genes	Reference
Rhodopirellula baltica	strain1	Planctomycetes Planctomycetacia	7,145,576	7,325	Unpublished [1]

Pseudomonadota

Alphaproteobacteria

Species	Strain	Type	Base Pairs	Genes	Reference
Agrobacterium tumefaciens	C58	Alphaproteobacteria	2,841,581	2,722	[107]
Anaplasma marginale	StMaries	Alphaproteobacteria	1,197,687	949	[108]
Anaplasma phagocytophilum	HZ	Alphaproteobacteria	1,471,282	1,264	[109]
Bartonella henselae	Houston-1	Alphaproteobacteria	1,931,047	1,612	[110]
Bartonella quintana	Toulouse	Alphaproteobacteria	1,581,384	1,308	[110]
Bradyrhizobium japonicum	USDA110	Alphaproteobacteria	9,105,828	8,317	[111]
Brucella abortus	2308 (chromosome I)	Alphaproteobacteria	1,156,948	1,164	[112]
	2308 (chromosome II)	Alphaproteobacteria	2,121,359	2,186	[112]
Brucella abortus	9-941 (chromosome I)	Alphaproteobacteria	2,124,241	2,030	[113]
	9-941 (chromosome II)	Alphaproteobacteria	1,162,204	1,055	[113]
Brucella melitensis	16M (chromosome I)	Alphaproteobacteria	2,117,144	2,059	[114]
	16M (chromosome II)	Alphaproteobacteria	1,177,787	1,139	[114]
Brucella suis	1330 (chromosome I)	Alphaproteobacteria	2,107,794	2,123	[115]
	1330 (chromosome II)	Alphaproteobacteria	1,207,381	1,150	[115]
Caulobacter crescentus	CB15	Alphaproteobacteria	4,016,947	3,737	[116]
Ehrlichia canis	Jake	Alphaproteobacteria	1,315,030	925	Unpublished [1]
Ehrlichia chaffeensis	Arkansas	Alphaproteobacteria	1,176,248	1,105	[109]
Ehrlichia ruminantium	Gardel	Alphaproteobacteria	1,499,920	950	Unpublished [1]
Ehrlichia ruminantium	Welgevonden	Alphaproteobacteria	1,512,977	958	Unpublished [1]
Unspecified	Unspecified	Alphaproteobacteria	1,516,355	920	[117]
Erythrobacter litoralis	HTCC2594	Alphaproteobacteria	3,052,398	3,011	Unpublished [1]
Gluconobacter oxydans	621H	Alphaproteobacteria	2,702,173	2,432	[118]
Jannaschia species	CCS1	Alphaproteobacteria	4,317,977	4,212	Unpublished [1]
Magnetospirillum magneticum	AMB1	Alphaproteobacteria	4,967,148	4,559	[119]
Mesorhizobium loti	MAFF303099	Alphaproteobacteria	7,036,071	6,752	[120]
Neorickettsia sennetsu	Miyayama	Alphaproteobacteria	859,006	932	[109]
Nitrobacter hamburgensis	X14	Alphaproteobacteria	4,406,967	3,804	Unpublished [1]
Nitrobacter winogradskyi	Nb255	Alphaproteobacteria	3,402,093	3,122	Unpublished [1]
Novosphingobium aromaticivorans	DSM12444	Alphaproteobacteria	3,561,584	3,324	Unpublished [1]
Pelagibacter ubique	HTCC1062	Alphaproteobacteria	1,308,759	1,354	[121]
Rhizobium etli	CFN42	Alphaproteobacteria	4,381,608	4,067	[122]
Rhizobium leguminosarum	viciae3841	Alphaproteobacteria	7,751,309	4,746	Unpublished [1]
Rhodobacter sphaeroides	2.4.1	Alphaproteobacteria	3,188,609	3,022	Unpublished [1]
Unspecified	Unspecified	Alphaproteobacteria	943,016	835	Unpublished [1]
Rhodopseudomonas palustris	BisB18	Alphaproteobacteria	5,513,844	4,886	Unpublished [1]
Rhodopseudomonas palustris	BisB5	Alphaproteobacteria	4,892,717	4,397	Unpublished [1]
Rhodopseudomonas palustris	CGA009	Alphaproteobacteria	5,459,213	4,833	[123]
Rhodopseudomonas palustris	HaA2	Alphaproteobacteria	5,331,656	4,683	Unpublished [1]
Rhodospirillum rubrum	ATCC11170	Alphaproteobacteria	4,352,825	3,791	Unpublished [1]
Rickettsia bellii	RML369-C	Alphaproteobacteria	1,522,076	1,429	Unpublished [1]
Rickettsia conorii	Malish7	Alphaproteobacteria	1,268,755	1,374	[124]
Rickettsia felis	URRWXCal2	Alphaproteobacteria	1,485,148	1,400	[125]
Rickettsia prowazekii	Madrid-E	Alphaproteobacteria	1,111,523	834	[126]
Rickettsia typhi	Wilmington	Alphaproteobacteria	1,111,496	838	[127]
Silicibacter pomeroyi	DSS3	Alphaproteobacteria	4,109,442	3,810	[128]
Silicibacter species	TM1040	Alphaproteobacteria	3,200,938	3,030	Unpublished [1]
Sinorhizobium medicae	WSM419	Alphaproteobacteria	3,781,904	3,635	[129]
Sinorhizobium meliloti	Rm1021	Alphaproteobacteria	3,654,135	3,341	[130]
Sphingopyxis alaskensis	RB2256	Alphaproteobacteria	3,345,170	3,165	Unpublished [1]
Wolbachia endosymbiont	TRS	Alphaproteobacteria	1,080,084	805	[131]
Wolbachia pipientis	wMel	Alphaproteobacteria	1,267,782	1,195	[132]
Zymomonas mobilis	ZM4	Alphaproteobacteria	2,056,416	1,998	[133]

Betaproteobacteria

Species	Strain	Type	Base Pairs	Genes	Reference
Azoarcus sp.	EbN1	Betaproteobacteria	4,296,230	4,128	2002 [134]
Bordetella bronchiseptica	RB50	Betaproteobacteria	5,339,179	5,006	Unpublished [1]
Bordetella parapertussis	12822	Betaproteobacteria	4,773,551	4,402	Unpublished [1]
Bordetella pertussis	TohamaI	Betaproteobacteria	4,086,189	3,806	Unpublished [1]
Burkholderia cenocepacia	AU1054	Betaproteobacteria	3,294,563	2,965	Unpublished [1]
Unspecified	Unspecified	Betaproteobacteria	2,788,459	2,472	Unpublished [1]
Unspecified	Unspecified	Betaproteobacteria	1,196,094	1,040	Unpublished [1]
Burkholderia mallei	ATCC23344	Betaproteobacteria	3,510,148	2,996	Unpublished [1]
Unspecified	Unspecified	Betaproteobacteria	2,325,379	2,029	2004 [135]
Burkholderia pseudomallei	1710b	Betaproteobacteria	4,126,292	3,736	Unpublished [1]
Unspecified	Unspecified	Betaproteobacteria	3,181,762	2,611	Unpublished [1]
Burkholderia pseudomallei	K96243	Betaproteobacteria	4,074,542 (chromosome I) 3,173,005 (chromosome II)	3,460 (chromosome I) 2,395 (chromosome II)	2004 [85]
Burkholderia species	383	Betaproteobacteria	3,694,126	3,334	Unpublished [1]
Unspecified	Unspecified	Betaproteobacteria	3,587,082	3,174	Unpublished [1]
Unspecified	Unspecified	Betaproteobacteria	1,395,069	1,209	Unpublished [1]
Burkholderia thailandensis	E264	Betaproteobacteria	3,809,201	3,276	2005 [136]
Unspecified	Unspecified	Betaproteobacteria	2,914,771	2,358	2005 [136]
Burkholderia xenovorans	LB400	Betaproteobacteria	4,895,836	4,430	Unpublished [1]
Unspecified	Unspecified	Betaproteobacteria	3,363,523	2,960	Unpublished [1]
Unspecified	Unspecified	Betaproteobacteria	1,471,779	1,312	Unpublished [1]
Chromobacterium violaceum	ATCC12472	Betaproteobacteria	4,751,080	4,407	2003 [137]
Dechloromonas aromatica	RCB	Betaproteobacteria	4,501,104	4,171	Unpublished [1]
Methylobacillus flagellatus	KT	Betaproteobacteria	2,971,517	2,753	Unpublished [1]
Neisseria gonorrhoeae	FA1090	Betaproteobacteria	2,153,922	2,002	Unpublished [1]
Neisseria meningitidis	serogroup A strain Z2491	Betaproteobacteria	2,184,406	2,121	2000 [138]
Neisseria meningitidis	serogroup B strain MC58	Betaproteobacteria	2,272,360	2,063	2000 [139]
Nitrosomonas europaea	Schmidt	Betaproteobacteria	2,812,094	2,574	2003 [140]
Nitrosospira multiformis	ATCC25196	Betaproteobacteria	3,184,243	2,757	Unpublished [1]
Polaromonas species	JS666	Betaproteobacteria	5,200,264	4,817	Unpublished [1]
Ralstonia eutropha	JMP134	Betaproteobacteria	3,806,533	3,439	Unpublished [1]
Unspecified	Unspecified	Betaproteobacteria	2,726,152	2,407	Unpublished [1]
Ralstonia metallidurans	CH34	Betaproteobacteria	3,928,089	3,601	Unpublished [1]
Unspecified	Unspecified	Betaproteobacteria	2,580,084	2,313	Unpublished [1]
Ralstonia solanacearum	GMI1000	Betaproteobacteria	3,716,413	3,441	2002 [141]
Unspecified	Unspecified	Betaproteobacteria	2,094,509	1,679	[141]
Rhodoferax ferrireducens	DSM15236	Betaproteobacteria	4,712,337	4,170	Unpublished [1]
Thiobacillus denitrificans	ATCC25259	Betaproteobacteria	2,909,809	2,827	Unpublished [1]

Gammaproteobacteria

Species	Strain	Type	Base Pairs	Genes	Reference
Acinetobacter sp.	ADP1	Gammaproteobacteria	3,598,621	3,325	2004 [142]
Baumannia cicadellinicola	Hc	Gammaproteobacteria	686,194	595	Unpublished [1]
Blochmannia floridanus	Strain	Gammaproteobacteria	705,557	589	2003 [143]
Blochmannia pennsylvanicus	bpEN	Gammaproteobacteria	791,654	610	2005 [144]
Buchnera aphidicola	APS	Gammaproteobacteria	640,681	564	2000 [145]
Buchnera aphidicola	B	Gammaproteobacteria	615,980	504	2003 [146]
Buchnera aphidicola	Sg	Gammaproteobacteria	641,454	545	2002 [147]
Carsonella ruddii	PV	Gammaproteobacteria	159,662	182	2006 [148]
Chromohalobacter salexigens	DSM3043	Gammaproteobacteria	3,696,649	3,298	Unpublished [1]
Colwellia psychrerythraea	34H	Gammaproteobacteria	5,373,180	4,910	Unpublished [1]
Coxiella burnetii	RSA493	Gammaproteobacteria	1,995,281	2,016	2003 [149]
Erwinia carotovora	SCRI1043	Gammaproteobacteria	5,064,019	4,492	Unpublished [1]
Escherichia coli	536	Gammaproteobacteria	4,938,920	4,685	Unpublished [1]
Escherichia coli	CFT073	Gammaproteobacteria	5,231,428	5,379	2002 [150]
Escherichia coli	K-12	Gammaproteobacteria	4,639,675 (4,646,332)	4,331 (4,337)	1997, [151] 2005 [152]
Escherichia coli	O157:H7	Gammaproteobacteria	5,528,445 (5,498,450)	5,349 (5,361)	2001, [153] 1999 [154]
Escherichia coli	UTI89	Gammaproteobacteria	5,065,741	5,066	Unpublished [1]
Francisella tularensis	LVS	Gammaproteobacteria	1,895,994	1,967	Unpublished [1]
Francisella tularensis	SCHUS4	Gammaproteobacteria	1,892,819	1,804	2005 [155]
Haemophilus ducreyi	3500HP	Gammaproteobacteria	1,698,955	1,717	Unpublished [1]
Haemophilus influenzae	86-028NP	Gammaproteobacteria	1,913,428	1,792	2005 [156]
Haemophilus influenzae	Rd	Gammaproteobacteria	1,830,138	1,709	1995 [157]
Hahella chejuensis	KCTC2396	Gammaproteobacteria	7,215,267	6,782	2005 [158]
Idiomarina loihiensis	L2TR	Gammaproteobacteria	2,839,318	2,628	2004 [159]
Legionella pneumophila	Lens	Gammaproteobacteria	3,345,687	2,947	2004 [160]
Legionella pneumophila	Paris	Gammaproteobacteria	3,503,610	3,082	2004 [160]
Legionella pneumophila	Philadelphia1	Gammaproteobacteria	3,397,754	2,942	Unpublished [1]
Mannheimia succiniciproducens	MBEL55E	Gammaproteobacteria	2,314,078	2,384	Unpublished [1]
Methylococcus capsulatus	Bath	Gammaproteobacteria	3,304,561	2,960	2004 [161]
Nitrosococcus oceani	ATCC19707	Gammaproteobacteria	3,481,691	2,976	Unpublished [1]
Pasteurella multocida	Pm70	Gammaproteobacteria	2,257,487	2,014	2001 [162]
Photobacterium profundum	SS9	Gammaproteobacteria	4,085,304	3,416	Unpublished [1]
Unspecified	Unspecified	Gammaproteobacteria	2,237,943	1,997	Unpublished [1]
Photorhabdus luminescens	laumondiiTTO1	Gammaproteobacteria	5,688,987	4,905	Unpublished [1]
Pseudoalteromonas haloplanktis	TAC125	Gammaproteobacteria	3,214,944	2,941	2005 [163]
Unspecified	Unspecified	Gammaproteobacteria	635,328	546	[163]
Pseudomonas aeruginosa	VRFPA04	Gammaproteobacteria	6,818,030	5,939	2016 [164]
Pseudomonas entomophila	L48	Gammaproteobacteria	5,888,780	5,168	Unpublished [1]
Pseudomonas fluorescens	Pf-5	Gammaproteobacteria	7,074,893	6,137	2005 [165]
Pseudomonas fluorescens	PfO-1	Gammaproteobacteria	6,438,405	5,736	Unpublished [1]
Pseudomonas putida	KT2440	Gammaproteobacteria	6,181,863	5,350	2002 [166]
Pseudomonas syringae	B728a	Gammaproteobacteria	6,093,698	5,136	2005 [167]
Pseudomonas syringae	DC3000	Gammaproteobacteria	6,397,126	5,470	2003 [168]
Pseudomonas syringae	phaseolicola1448A	Gammaproteobacteria	5,928,787	4,983	Unpublished [1]
Psychrobacter arcticum	273-4	Gammaproteobacteria	2,650,701	2,147	Unpublished [1]
Psychrobacter cryohalolentis	K5	Gammaproteobacteria	~3.1Mb	2,575	[169]
Unspecified	Unspecified	Gammaproteobacteria	3,059,876	2,467	Unpublished [1]
Saccharophagus degradans	Feb-40	Gammaproteobacteria	5,057,531	4,008	Unpublished [1]
Salmonella enterica	ATCC9150	Gammaproteobacteria	4,585,229	4,093	2004 [170]
Salmonella enterica	SCB67	Gammaproteobacteria	4,755,700	4,445	2005 [171]
Salmonella enterica	Ty2	Gammaproteobacteria	4,791,961	4,323	2003 [172]
Salmonella enterica	typhiCT18	Gammaproteobacteria	4,809,037	4,600	2001 [173]
Salmonella typhimurium	LT2	Gammaproteobacteria	4,857,432	4,452	2001 [174]
Shewanella denitrificans	OS217	Gammaproteobacteria	4,545,906	3,754	Unpublished [1]
Shewanella oneidensis	MR1	Gammaproteobacteria	4,969,803	4,630	2002 [175]
Shigella boydii	Sb227	Gammaproteobacteria	4,519,823	4,142	2005 [176]
Shigella dysenteriae	Sd197	Gammaproteobacteria	4,369,232	4,277	2005 [176]
Shigella flexneri	2457T	Gammaproteobacteria	4,599,354	4,073	2003 [177]
Shigella flexneri	2a301	Gammaproteobacteria	4,607,203	4,436	2002 [178]
Shigella sonnei	Ss046	Gammaproteobacteria	4,825,265	4,224	2005 [176]
Sodalis glossinidius	morsitans	Gammaproteobacteria	4,171,146	2,432	2006 [179]
Thiomicrospira crunogena	XCL2	Gammaproteobacteria	2,427,734	2,192	Unpublished [1]
Vibrio cholerae	N16961	Gammaproteobacteria	2,961,149 (chromosome I) 1,072,315 (chromosome II)	2,736 (chromosome I) 1,092 (chromosome II)	2000 [180]
Vibrio fischeri	ES114	Gammaproteobacteria	2,906,179 (chromosome I) 1,332,022 (chromosome II)	2,575 (chromosome I) 1,172 (chromosome II)	2005 [181]
Vibrio parahaemolyticus	RIMD2210633	Gammaproteobacteria	3,288,558 (chromosome I) 1,877,212 (chromosome II)	3,080 (chromosome I) 1,752 (chromosome II)	2000 [182]
Vibrio vulnificus	CMCP6	Gammaproteobacteria	3,281,944 (chromosome I) 1,844,853 (chromosome II)	2,973 (chromosome I) 1,565 (chromosome II)	2003 [183]
Vibrio vulnificus	YJ016	Gammaproteobacteria	3,354,505 (chromosome I) 1,857,073 (chromosome II)	3,262 (chromosome I) 1,697 (chromosome II)	2003 [184]
Wigglesworthia glossinidia	Strain	Gammaproteobacteria	697,724	611	2002 [185]
Xanthomonas axonopodis	citri306	Gammaproteobacteria	5,175,554	4,312	2002 [186]
Xanthomonas campestris	8004	Gammaproteobacteria	5,148,708	4,273	2005 [187]
Xanthomonas campestris	8510	Gammaproteobacteria	5,178,466	4,487	2005 [188]
Xanthomonas campestris	ATCC33913	Gammaproteobacteria	5,076,188	4,181	2002 [186]
Xanthomonas oryzae	KACC10331	Gammaproteobacteria	4,941,439	4,637	2005 [189]
Xanthomonas oryzae	MAFF311018	Gammaproteobacteria	4,940,217	4,372	Unpublished [1]
Xylella fastidiosa	9a5c	Gammaproteobacteria	2,679,306	2,766	2000 [190]
Xylella fastidiosa	Temecula1	Gammaproteobacteria	2,519,802	2,034	2003 [191]
Yersinia pestis	Antiqua	Gammaproteobacteria	4,702,289	4,167	2006 [192]
Yersinia pestis	CO-92BiovarOrientalis	Gammaproteobacteria	4,653,728	4,008	2001 [193]
Yersinia pestis	KIM	Gammaproteobacteria	4,600,755	4,090	2002 [194]
Yersinia pestis	Mediaevalis	Gammaproteobacteria	4,595,065	3,895	2004 [195]
Yersinia pseudotuberculosis	IP32953	Gammaproteobacteria	4,744,671	3,974	2004 [196]

Myxococcota–Campylobacterota

Species	Strain	Type	Base Pairs	Genes	Reference
Anaeromyxobacter dehalogenans	2CP-C	delta-epsilon	5,013,479	4,346	Unpublished [1]
Bdellovibrio bacteriovorus	HD100	delta-epsilon	3,782,950	3,583	2004 [197]
Campylobacter jejuni	NCTC11168	delta-epsilon	1,641,481	1,643	2000 [198]
Campylobacter jejuni	RM1221	delta-epsilon	1,777,831	1,838	2005 [199]
Desulfotalea psychrophila	LSv54	delta-epsilon	3,523,383	3,118	Unpublished [1]
Desulfovibrio desulfuricans	G20	delta-epsilon	3,730,232	3,775	Unpublished [1]
Desulfovibrio vulgaris	Hildenborough	delta-epsilon	3,570,858	3,379	2004 [200]
Geobacter metallireducens	GS15	delta-epsilon	3,997,420	3,519	Unpublished [1]
Geobacter sulfurreducens	PCA	delta-epsilon	3,814,139	3,447	2003 [201]
Helicobacter hepaticus	ATCC51449	delta-epsilon	1,799,146	1,875	2003 [202]
Helicobacter pylori	26695	delta-epsilon	1,667,867	1,566	1997 [203]
Helicobacter pylori	HPAG1	delta-epsilon	1,596,366	1,536	Unpublished [1]
Helicobacter pylori	J99	delta-epsilon	1,643,831	1,491	1999 [204]
Lawsonia intracellularis	PHEMN1-00	delta-epsilon	1,719,014	1,344	Unpublished [1]
Lawsonia intracellularis	PHE/MN1-00	delta-epsilon	1,457,619 (chromosome) 27,048 (plasmid A) 39,794 (plasmid B) 194,553 (plasmid C)	1,187 29 (plasmid A) 24 (plasmid B) 104 (plasmid C)	2013 [205]
Myxococcus xanthus	DK1622	delta-epsilon	9,139,763	7,331	Unpublished [1]
Pelobacter carbinolicus	DSM2380	delta-epsilon	3,665,893	3,119	Unpublished [1]
Sorangium cellulosum	So ce56	delta-epsilon	13,033,779	9,367	2007 [206]
Sulfurimonas denitrificans	DSM1251	delta-epsilon	2,201,561	2,104	2007 [207]
Syntrophus aciditrophicus	SB	delta-epsilon	3,179,300	3,168	Unpublished [1]
Thiomicrospira denitrificans	ATCC33889	delta-epsilon	2,201,561	2,097	Unpublished [1]
Wolinella succino	DSMZ1740	delta-epsilon	2,110,355	2,044	2003 [208]

Spirochaetota

Species	Strain	Type	Base Pairs	Genes	Reference
Borrelia burgdorferi	B31	Spirochaetota	910,724	850	[209]
Borrelia garinii	PBi	Spirochaetota	904,246	832	[210]
Leptospira interrogans	56601	Spirochaetota	4,332,241	4,358	[211]
Unspecified	Unspecified	Spirochaetota	358,943	367	[211]
Leptospira interrogans	FiocruzL1130	Spirochaetota	4,277,185	3,394	[212]
Unspecified	Unspecified	Spirochaetota	350,181	264	[212]
Treponema denticola	ATCC35405	Spirochaetota	2,843,201	2,767	[213]
Treponema pallidum	Nichols	Spirochaetota	1,138,011	1,031	[214]

Synergistota

Species	Strain	Type	Base Pairs	Genes	Reference	GenBank Identifier
Thermovirga lienii	Cas60314, DSM 17291	Synergistia	1,967,774		DOE Joint Genome Institute	CP003096

Mycoplasmatota

Species	Strain	Type	Base Pairs	Genes	Reference	GenBank Identifier
Mesoplasma florum	L1	Mollicutes	793,224	683	Unpublished [1]
Mycoplasma anatis	1340, ATCC 25524	Mollicutes			[215]	AFVJ00000000
Mycoplasma capricolum	ATCC273	Mollicutes	1,010,023	812	Unpublished [1]
Mycoplasma gallisepticum	R	Mollicutes	996,422	726	[216]
Mycoplasma genitalium	G37	Mollicutes	580,076	476	[217]
Mycoplasma haemocanis	Illinois	Mollicutes	919,992		Unpublished	CP003199
Mycoplasma hyopneumoniae	232	Mollicutes	892,758	691	[218]
Mycoplasma hyopneumoniae	7448	Mollicutes	920,079	663	[219]
Mycoplasma hyopneumoniae	J	Mollicutes	897,405	665	[219]
Mycoplasma hyorhinis	GDL-1	Mollicutes	837,480		Unpublished	CP003231
Mycoplasma leachii	99/014/6	Mollicutes	1,017,232		Unpublished	FR668087
Mycoplasma mobile	163K	Mollicutes	777,079	635	[220]
Mycoplasma mycoides	SC	Mollicutes	1,211,703	1,016	[221]
Mycoplasma penetrans	HF2	Mollicutes	1,358,633	1,037	[222]
Mycoplasma pneumoniae	M129	Mollicutes	816,394	688	[223]
Mycoplasma pulmonis	UAB	Mollicutes	963,879	782	[224]
Mycoplasma synoviae	53	Mollicutes	799,476	672	[219]
Phytoplas maasteris	AYWB	Mollicutes	706,569	671	Unpublished [1]
Phytoplas maasteris	OY	Mollicutes	860,631	754	[225]
Ureaplasma urealyticum	serovar3	Mollicutes	751,719	611	[226]

Thermodesulfobacteriota

Species	Strain	Type	Base Pairs	Genes	Reference
Thermodesulfatator indicus	CIR29812(T)	Thermodesulfobacteriota	2,322,224	2,291	2012 [227]
Thermodesulfobacterium geofontis	OPF15(T)	Thermodesulfobacteriota	1,634,377	1,635	2013 [228]

Thermotogota

Species	Strain	Type	Base Pairs	Genes	Reference
Fervidobacterium nodosum	Rt17-B1	Thermotogota	1,950,000	1,750	2009 [229]
Kosmotoga olearia	TBF 19.5.1	Thermotogota	2,302,126	2,118	2011 [230]
Mesotoga prima	MesG1.Ag.4.2	Thermotogota	2,974,229 chromosome 1,724 plasmid	2,736	2012 [231]
Thermosipho africanus	TCF52B	Thermotogota	2,016,657	2,000	2009 [232]
Thermosipho melanesiensis	BI429	Thermotogota	1,920,000	1,879	2009 [229]
Thermotoga lettingae	TMO	Thermotogota	2,140,000	2,040	2009 [229]
Thermotoga maritima	MSB8	Thermotogota	1,860,725	1,846	1999, [233] 2013 [234]
Thermotoga petrophila	RKU-1	Thermotogota	1,820,000	1,785	2009 [229]

See also

• Genome project
• Human microbiome project
• List of sequenced eukaryotic genomes
• List of sequenced archaeal genomes
• List of sequenced plastomes

References

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• In silico analysis of complete bacterial genomes: PCR, AFLP–PCR and endonuclease restriction
• Combining diverse evidence for gene recognition in completely sequenced bacterial genomes
• Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes

External links

• BacMap — an up-to-date electronic atlas of annotated bacterial genomes
• SUPERFAMILY comparative genomics database Includes genomes of completely sequenced prokaryotes, and sophisticated datamining plus visualisation tools for analysis