List of sequenced bacterial genomes

Last updated

This list of sequenced eubacterial genomes contains most of the eubacteria known to have publicly available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration, a public database which can be searched [1] on the web. A few of the listed genomes may not be in the INSDC database, but in other public databases[ verification needed ].

Contents

Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed scientific literature.

For the genomes of archaea see list of sequenced archaeal genomes.


Abditibacteriota

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Abditibacterium utsteinense LMG 29911 Abditibacteriota 3,606,3303,2402018 [2] NZ_NIGF00000000.1

Actinomycetota

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Corynebacterium diphtheriae C7 (beta) Actinobacteridae 2,499,189Unpublished CP003210
Corynebacterium diphtheriae PW8 Actinobacteridae 2,530,683Unpublished CP003216
Bifidobacterium longum NCC2705Actinobacteria2,256,6401,7272002 [3]
Corynebacterium diphtheriae NCTC13129Actinobacteria2,488,6352,3202003 [4]
Corynebacterium efficiens YS314Actinobacteria3,147,0902,9422003 [5]
Corynebacterium glutamicum ATCC13032Actinobacteria3,309,4013,099Unpublished [1]
Corynebacterium jeikeium K411Actinobacteria2,462,4992,1042005 [6]
Frankia speciesCcI3Actinobacteria5,433,6284,499Unpublished [1]
Mycobacterium avium k10Actinobacteria4,829,7814,3502005 [7]
Mycobacterium bovis AF212297Actinobacteria4,345,4923,9532003 [8]
Mycobacterium leprae TNActinobacteria3,268,2032,7202001 [9]
Mycobacterium tuberculosis CDC1551Actinobacteria4,403,8374,189Unpublished [1]
Mycobacterium tuberculosis H37Rv Actinobacteria4,411,5323,9991998 [10]
Nocardia farcinica IFM10152Actinobacteria6,021,2255,6832004 [11]
Streptomyces avermitilis MA4680Actinobacteria9,025,6087,5772001 [12]
Streptomyces coelicolor A3Actinobacteria8,667,5077,8251996 [13]
Symbiobacterium thermophilum StrainActinobacteria3,566,1353,3372004 [14]
Thermobifida fusca YXActinobacteria3,642,2493,110Unpublished [1]

Aquificota

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Aquifex aeolicus VF5 Aquificae 1,551,3351,5221998 [15] Chromosome NC_000918

Plasmid ece1 NC_001880

Armatimonadota

Bacteroidota/Chlorobiota group

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Bacteroides fragilis NCTC9343 Bacteroidota 5,205,1404,2602005 [16] Chromosome CR626927

Plasmid pBF9343 CR626928

Bacteroides fragilis YCH46 Bacteroidota 5,277,2744,5782004 [17] Chromosome AP006841

Plasmid pBFY46 AP006842

Bacteroides thetaiotaomicron VPI-5482 Bacteroidota 6,260,3614,7782003 [18] Chromosome AE015928

Plasmid p5482 AY171301

Candidatus Amoebophilus asiaticus 5a2 Bacteroidota 1,884,3642010 [19] CP001102
Chlorobaculum parvum NCIB 8327 Chlorobiota 2,289,249 DOE Joint Genome Institute CP001099
Chlorobium chlorochromatii CaD3 Chlorobiota 2,572,0792,002DOE Joint Genome Institute CP000108
Chlorobium ferrooxidans DSM 13031 Chlorobiota DOE Joint Genome Institute AASE00000000
Chlorobium limicola DSM 245 Chlorobiota 2,763,181DOE Joint Genome Institute NC_010803
Chlorobium phaeobacteroides BS1 Chlorobiota 2,736,403DOE Joint Genome Institute NC_010831
Chlorobium phaeobacteroides DSM 266 Chlorobiota 3,133,902DOE Joint Genome Institute NC_008639
Chlorobium phaeovibrioides DSM 265 Chlorobiota 1,966,858DOE Joint Genome Institute NC_009337
Chlorobium tepidum TLS Chlorobiota 2,154,9462,2552002 [20] AE006470
Chloroherpeton thalassium ATCC 35110 Chlorobiota 3,293,456DOE Joint Genome Institute CP001100
Cytophaga hutchinsonii ATCC 33406 Chlorobiota 4,433,2182007 [21] CP000383
Haliscomenobacter hydrossis DSM 1100 Bacteroidota 8,371,6862011 [22] Chromosome CP002691

Plasmid pHALHY01 CP002692
Plasmid pHALHY02 CP002693
Plasmid pHALHY03 CP002694

Ignavibacterium album JCM 16511 Ignavibacteriota 3,658,997University of Copenhagen CP003418
Pelodictyon luteolum ( Chlorobium luteolum )DSM 273 Chlorobiota 2,364,8422,083DOE Joint Genome Institute CP000096
Pelodictyon phaeoclathratiforme BU-1 Chlorobiota 3,018,238DOE Joint Genome Institute CP001110
Porphyromonas gingivalis ATCC 33277 Bacteroidota 2,354,8862008 [23] NC_010729
Porphyromonas gingivalis W83 Bacteroidota 2,343,4761,9092003 [24] NC_002950
Prosthecochloris aestuarii DSM 271 Chlorobiota 2,512,923DOE Joint Genome InstituteChromosome CP001108

Plasmid pPAES01 CP001109

Salinibacter ruber DSM 13855 Bacteroidota 3,551,8232,801 [25] NC_007677
Salinibacter ruber M8 Bacteroidota 3,619,447 [26] Chromosome FP565814

Plasmid pSR11 FP565810
Plasmid pSR56 FP565811
Plasmid pSR61 FP565812
Plasmid pSR84 NC_014157

Saprospira grandis str. Lewin Bacteroidota 4,345,237University of Hawaii at ManoaChromosome CP002831

Plasmid CP002832

Caldisericota

Chlamydiota/Verrucomicrobiota group

SpeciesStrainTypeBase PairsGenesReference
Akkermansia muciniphila ATCC BAA-835 Verrucomicrobiota 2,664,1022,176 [27]
Akkermansia muciniphila Urmite Verrucomicrobiota 2,664,7142,192 [28]
Chlamydia muridarum Nigg Chlamydiota 1,072,950904 [29]
Chlamydia trachomatis AHAR13 Chlamydiota 1,044,459911 [30]
Chlamydia trachomatis DUW Chlamydiota 1,042,519894 [31]
Chlamydophila abortus S26-3 Chlamydiota 1,144,377961 [32]
Chlamydophila caviae GPIC Chlamydiota 1,173,390998 [33]
Chlamydophila felis FeC56 Chlamydiota 1,166,2391,005 [34]
Chlamydophila pneumoniae AR39 Chlamydiota 1,229,8531,110 [29]
Chlamydophila pneumoniae CWL029 Chlamydiota 1,230,2301,052 [35]
Chlamydophila pneumoniae J138 Chlamydiota 1,226,5651,069 [36]
Chlamydophila pneumoniae TW183 Chlamydiota 1,225,9351,113ALTANA Pharma
Parachlamy diaspecies UWE25 Chlamydiota 2,414,4652,031 [37]

Chloroflexota

SpeciesStrainTypeBase PairsGenesReference
Dehalococcoides mccartyi 195 Dehalococcoidetes 1,469,7201,580 [38]
Dehalococcoides mccartyi CBDB1 Dehalococcoidetes 1,395,5021,458 [39]
Dehalococcoides mccartyi DCMB5 Dehalococcoidetes 1,431,9021,526 [40]
Dehalococcoides mccartyi BTF08 Dehalococcoidetes 1,452,3351,580 [40]

Chrysiogenota

Cyanobacteria

SpeciesStrainTypeBase PairsGenesReference
Anabaena nostoc PCC7120 Nostocales 6,413,7715,368 [41]
Anabaena variabilis ATCC29413 Nostocales 6,365,7275,039DOE Joint Genome Institute
Cyanobacteria bacteriumYellowstoneA Chroococcales 2,932,7662,760 [42]
Cyanobacteria bacteriumYellowstoneB Chroococcales 3,046,6822,862 [42]
Gloeobacter violaceus PCC7421 Gloeobacteria 4,659,0194,430 [43]
Prochlorococcus marinus MED4 Prochlorales 1,657,9901,716 [44]
Prochlorococcus marinus MIT9312 Prochlorales 1,709,2041,809Unpublished [1]
Prochlorococcus marinus MIT9313 Prochlorales 2,410,8732,273 [44]
Prochlorococcus marinus NATL2A Prochlorales 1,842,8991,890Unpublished [1]
Prochlorococcus marinus SS120 Prochlorales 1,751,0801,882 [45]
Synechococcus elongatus PCC6301 Chroococcales 2,696,2552,525Unpublished [1]
Synechococcus elongatus PCC7942 Chroococcales 2,695,9032,611Unpublished [1]
Synechococcus speciesWH8102 Chroococcales 2,434,4282,526 [46]
Synechococcus speciesCC9605 Chroococcales 2,510,6592,638Unpublished [1]
Synechococcus speciesCC9902 Chroococcales 2,234,8282,304Unpublished [1]
Synechocystis speciesPCC6803 Chroococcales 3,573,4703,167 [47]
Thermosynechococcus elongatus bp1 Chroococcales 2,593,8572,475Unpublished [1]

Deferribacterota

SpeciesStrainTypeBase PairsGenesReference
Geovibrio sp. Deferribacterota 2,971,6582,415DOE Joint Genome Institute
Mucispirillum schaedleri ASF457 Deferribacterota 2,319,1802,144Broad Institute
Denitrovibrio acetiphilus DSM 12809 Deferribacterota 3,222,0773,068 [48]
Calditerrivibrio nitroreducens DSM 19672 Deferribacterota 2,157,8352,117 [49]
Deferribacter desulfuricans SSM1 Deferribacterota 2,234,3892,184 [50]
Flexistipes sinusarabici DSM 4947 Deferribacterota 2,526,5902,397 [51]

Deinococcota

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Deinococcus deserti VCD115 Deinococcales 2,819,842 [52] Chromosome NC_012526

Plasmid 1 NC_012528
Plasmid 2 NC_012529
Plasmid 3 NC_012528

Deinococcus geothermalis DSM 11300 Deinococcales 2,467,2052,335DOE Joint Genome InstituteChromosome CP000359

Plasmid pDGEO01 CP000358
Plasmid pDGEO02 CP000856

Deinococcus gobiensis I-0 Deinococcales 3,137,147 [53] Chromosome CP002191

Plasmid P1 CP002192
Plasmid P2 CP002193
Plasmid P3 CP002194
Plasmid P4 CP002195
Plasmid P5 CP002196
Plasmid P6 CP002197

Deinococcus maricopensis DSM 21211 Deinococcales 3,498,530US DOE Joint Genome Institute CP002454
Deinococcus proteolyticus MRP Deinococcales 2,147,060US DOE Joint Genome InstituteChromosome CP002536

Plasmid pDEIPR01 CP002537
Plasmid pDEIPR02 CP002538
Plasmid pDEIPR03 CP002539
Plasmid pDEIPR04 CP002540

Deinococcus radiodurans R1 Deinococcales Chromosome 1: 2,648,638

Chromosome 2: 412,348

Chromosome 1: 2,579

Chromosome 2: 357

[54] Chromosome 1 NC_001263

Chromosome 2 NC_001264
Plasmid CP1 NC_000959
Plasmid MP1 NC_000958

Marinithermus hydrothermalis DSM 14884 Thermales 2,269,167DOE Joint Genome Institute CP002630
Meiothermus ruber DSM 1279 Thermales 3,097,457DOE Joint Genome Institute CP001743
Meiothermus silvanus DSM 9946 Thermales 3,249,394 [55] Chromosome CP002042

Plasmid pMESIL01 CP002043
Plasmid pMESIL02 CP002044

Oceanithermus profundus DSM 14977 Thermales 2,303,940DOE Joint Genome InstituteChromosome CP002361

Plasmid pOCEPR01

Thermus scotoductus SA-01 Thermales 2,346,803 [56] Chromosome CP001962

Plasmid pTSC8 CP001963

Thermus speciesCCB_US3_UF1 Thermales 2,243,772Universiti Sains MalaysiaChromosome CP003126

Plasmid pTCCB09 CP003127

Thermus thermophilus HB27 Thermales 1,894,8771,982 [57] Chromosome AE017221

Plasmid pTT27 AE017222

Thermus thermophilus HB8 Thermales 1,849,7421,973Nara Institute of Science and TechnologyChromosome NC_006461

Plasmid pTT27 NC_006462
Plasmid pTT8 NC_006463

Thermus thermophilus JL-18 Thermales 1,902,595DOE Joint Genome InstituteChromosome CP003252

Plasmid pTTJL1801 CP003253
Plasmid pTTJL1802 CP003254

Thermus thermophilus SG0.5JP17-16 Thermales 1,863,201DOE Joint Genome InstituteChromosome CP002777

Plasmid pTHTHE1601 CP002778

Truepera radiovictrix DSM 17093 Deinococcales 3,260,398DOE Joint Genome Institute CP002049

Dictyoglomota

Elusimicrobiota

Fibrobacterota/Acidobacteriota group

SpeciesStrainTypeBase PairsGenesReference
Acidobacteria bacteriumEllin345 Acidobacteriota 5,650,3684,777Unpublished [1]
Leifsonia xyli CTCB07Acidobacteriota2,584,1582,030 [58]
Propionibacterium acnes KPA171202Acidobacteriota2,560,2652,297 [59]
Rubrobacter xylanophilus DSM9941Acidobacteriota3,225,7483,140DOE Joint Genome Institute
Tropheryma whippelii TW08/27Acidobacteriota925,938784 [60]
Tropheryma whippelii TwistAcidobacteriota927,303808 [61]

Bacillota

SpeciesStrainTypeBase PairsGenesReference
Bacillus anthracis Ames Bacilli 5,227,2935,311 [62]
Bacillus anthracis Sterne Bacilli 5,228,6635,287Unpublished [1]
Bacillus cereus ATCC10987 Bacilli 5,224,2835,603 [63]
Bacillus cereus ATCC14579 Bacilli 5,411,8095,234 [64]
Bacillus cereus ZK Bacilli 5,300,9155,134Unpublished [1]
Bacillus clausii KSMK16 Bacilli 4,303,8714,108 [65]
Bacillus halodurans C125 Bacilli 4,202,3524,066 [66]
Bacillus licheniformis ATCC14580 Bacilli 4,222,3344,152 [67]
Bacillus licheniformis Unspecified Bacilli 4,222,6454,196 [68]
Bacillus licheniformis DSM13 Bacilli 4,222,6454,196 [68]
Bacillus subtilis 168 Bacilli 4,214,6304,106 [69]
Bacillus thuringiensis 9727 Bacilli 5,237,6825,117 [70]
Carboxydothermus hydrogenoformans Z2901 Clostridia 2,401,5202,620 [71]
Clostridium acetobutylicum ATCC824 Clostridia 3,940,8803,672 [72]
Clostridium difficile QCD-32g58 Clostridia 3,840,681Unpublished [1]
Clostridium perfringens 13 Clostridia 3,031,4302,660 [73]
Clostridium tetani E88 Clostridia 2,799,2512,373 [74]
Desulfitobacterium hafniense Y51 Clostridia 5,727,5345,060 [75]
Enterococcus faecalis V583 Bacilli 3,218,0313,113 [76]
Geobacillus kaustophilus HTA426 Bacilli 3,544,7763,498 [77]
Lactobacillus acetotolerans NCFM Bacilli
Lactobacillus acidophilus NCFM Bacilli 1,993,5641,864 [78]
Lactobacillus delbrueckii bulgaricus Bacilli 1,864,9982,096Unpublished [1]
Lactobacillus johnsonii NCC533 Bacilli 1,992,6761,821 [79]
Lactobacillus plantarum WCFS1 Bacilli 3,308,2743,051 [79]
Lactobacillus sakei 23K Bacilli 1,884,6611,885Unpublished [1]
Lactobacillus sakei sakei23K Bacilli 1,884,6611,885Unpublished [1]
Lactobacillus salivarius UCC118 Bacilli 1,827,1111,717Unpublished [1]
Lactococcus lactis IL1403 Bacilli 2,365,5892,266 [80]
Listeria innocua Clip11262 Bacilli 3,011,2082,981 [81]
Listeria monocytogenes EGD Bacilli 2,944,5282,855 [81]
Listeria monocytogenes 4b Bacilli 2,905,1872,821 [82]
Moorella thermoacetica ATCC39073 Clostridia 2,628,7842,465Unpublished [1]
Oceanobacillus iheyensis HTE831 Bacilli 3,630,5283,496 [83]
Staphylococcus aureus COL Bacilli 2,809,4222,673 [84]
Staphylococcus aureus MRSA252 Bacilli 2,902,6192,744 [85]
Staphylococcus aureus MSSA476 Bacilli 2,799,8022,619 [85]
Staphylococcus aureus Mu50 Bacilli 2,878,5292,699 [86]
Staphylococcus aureus MW2 Bacilli 2,820,4622,632 [87]
Staphylococcus aureus N315 Bacilli 2,814,8162,593 [86]
Staphylococcus aureus NCTC8325 Bacilli 2,821,3612,892Unpublished [1]
Staphylococcus aureus RF122 Bacilli 2,742,5312,589Unpublished [1]
Staphylococcus aureus USA300 Bacilli 2,872,7692,560 [88]
Staphylococcus epidermidis ATCC12228 Bacilli 2,499,2792,419Unpublished [1]
Staphylococcus epidermidis RP62A Bacilli 2,616,5302,494 [84]
Staphylococcus haemolyticus JCSC1435 Bacilli 2,685,0152,678 [89]
Staphylococcus saprophyticus saprophyticus Bacilli 2,516,5752,446 [90]
Streptococcus agalactiae A909 Bacilli 2,127,8391,996 [91]
Streptococcus agalactiae NEM316 Bacilli 2,211,4852,134 [92]
Streptococcus agalactiae 2603 V/R Bacilli 2,160,2672,124 [93]
Streptococcus mutans UAB159 Bacilli 2,030,9211,960 [94]
Streptococcus pneumoniae R6 Bacilli 2,038,6152,043 [95]
Streptococcus pneumoniae TIGR4 Bacilli 2,160,8422,125 [96]
Streptococcus pyogenes M5Manfredo Bacilli 1,841,271Unpublished [1]
Streptococcus pyogenes MGAS10270 Bacilli 1,928,2521,987 [97]
Streptococcus pyogenes MGAS10394 Bacilli 1,899,8771,886 [98]
Streptococcus pyogenes MGAS10750 Bacilli 1,937,1111,979 [97]
Streptococcus pyogenes MGAS2096 Bacilli 1,860,3551,898 [97]
Streptococcus pyogenes MGAS315 Bacilli 1,900,5211,865 [99]
Streptococcus pyogenes MGAS5005 Bacilli 1,838,5541,865 [100]
Streptococcus pyogenes MGAS6180 Bacilli 1,897,5731,894 [101]
Streptococcus pyogenes MGAS8232 Bacilli 1,895,0171,845 [102]
Streptococcus pyogenes MGAS9429 Bacilli 1,836,4671,877 [97]
Streptococcus pyogenes SF370 Bacilli 1,852,4411,696 [103]
Streptococcus pyogenes SSI1 Bacilli 1,894,2751,861 [104]
Streptococcus thermophilus CNRZ1066 Bacilli 1,796,2261,915 [105]
Streptococcus thermophilus LMG18311 Bacilli 1,796,8461,889 [105]
Thermoanaerobacter tengcongensis MB4T Clostridia 2,689,4452,588Unpublished [1]

Fusobacteriota

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Fusobacterium nucleatum ATCC25586Fusobacteria2,174,5002,067 [106]
Fusobacterium sp.11_3_2FusobacteriaUnpublished ACUO00000000
Fusobacterium sp.21_1AFusobacteriaUnpublished ADEE00000000

Gemmatimonadota

Nitrospirota

Planctomycetota

SpeciesStrainTypeBase PairsGenesReference
Rhodopirellula baltica strain1Planctomycetes Planctomycetacia7,145,5767,325Unpublished [1]

Pseudomonadota

Alphaproteobacteria

SpeciesStrainTypeBase PairsGenesReference
Agrobacterium tumefaciens C58 Alphaproteobacteria 2,841,5812,722 [107]
Anaplasma marginale StMaries Alphaproteobacteria 1,197,687949 [108]
Anaplasma phagocytophilum HZ Alphaproteobacteria 1,471,2821,264 [109]
Bartonella henselae Houston-1 Alphaproteobacteria 1,931,0471,612 [110]
Bartonella quintana Toulouse Alphaproteobacteria 1,581,3841,308 [110]
Bradyrhizobium japonicum USDA110 Alphaproteobacteria 9,105,8288,317 [111]
Brucella abortus 2308 (chromosome I) Alphaproteobacteria 1,156,9481,164 [112]
2308 (chromosome II) Alphaproteobacteria 2,121,3592,186 [112]
Brucella abortus 9-941 (chromosome I) Alphaproteobacteria 2,124,2412,030 [113]
9-941 (chromosome II) Alphaproteobacteria 1,162,2041,055 [113]
Brucella melitensis 16M (chromosome I) Alphaproteobacteria 2,117,1442,059 [114]
16M (chromosome II) Alphaproteobacteria 1,177,7871,139 [114]
Brucella suis 1330 (chromosome I) Alphaproteobacteria 2,107,7942,123 [115]
1330 (chromosome II) Alphaproteobacteria 1,207,3811,150 [115]
Caulobacter crescentus CB15 Alphaproteobacteria 4,016,9473,737 [116]
Ehrlichia canis Jake Alphaproteobacteria 1,315,030925Unpublished [1]
Ehrlichia chaffeensis Arkansas Alphaproteobacteria 1,176,2481,105 [109]
Ehrlichia ruminantium Gardel Alphaproteobacteria 1,499,920950Unpublished [1]
Ehrlichia ruminantium Welgevonden Alphaproteobacteria 1,512,977958Unpublished [1]
UnspecifiedUnspecified Alphaproteobacteria 1,516,355920 [117]
Erythrobacter litoralis HTCC2594 Alphaproteobacteria 3,052,3983,011Unpublished [1]
Gluconobacter oxydans 621H Alphaproteobacteria 2,702,1732,432 [118]
Jannaschia speciesCCS1 Alphaproteobacteria 4,317,9774,212Unpublished [1]
Magnetospirillum magneticumAMB1 Alphaproteobacteria 4,967,1484,559 [119]
Mesorhizobium loti MAFF303099 Alphaproteobacteria 7,036,0716,752 [120]
Neorickettsia sennetsu Miyayama Alphaproteobacteria 859,006932 [109]
Nitrobacter hamburgensisX14 Alphaproteobacteria 4,406,9673,804Unpublished [1]
Nitrobacter winogradskyi Nb255 Alphaproteobacteria 3,402,0933,122Unpublished [1]
Novosphingobium aromaticivorans DSM12444 Alphaproteobacteria 3,561,5843,324Unpublished [1]
Pelagibacter ubique HTCC1062 Alphaproteobacteria 1,308,7591,354 [121]
Rhizobium etli CFN42 Alphaproteobacteria 4,381,6084,067 [122]
Rhizobium leguminosarum viciae3841 Alphaproteobacteria 7,751,3094,746Unpublished [1]
Rhodobacter sphaeroides 2.4.1 Alphaproteobacteria 3,188,6093,022Unpublished [1]
UnspecifiedUnspecified Alphaproteobacteria 943,016835Unpublished [1]
Rhodopseudomonas palustrisBisB18 Alphaproteobacteria 5,513,8444,886Unpublished [1]
Rhodopseudomonas palustris BisB5 Alphaproteobacteria 4,892,7174,397Unpublished [1]
Rhodopseudomonas palustris CGA009 Alphaproteobacteria 5,459,2134,833 [123]
Rhodopseudomonas palustris HaA2 Alphaproteobacteria 5,331,6564,683Unpublished [1]
Rhodospirillum rubrum ATCC11170 Alphaproteobacteria 4,352,8253,791Unpublished [1]
Rickettsia bellii RML369-C Alphaproteobacteria 1,522,0761,429Unpublished [1]
Rickettsia conorii Malish7 Alphaproteobacteria 1,268,7551,374 [124]
Rickettsia felis URRWXCal2 Alphaproteobacteria 1,485,1481,400 [125]
Rickettsia prowazekii Madrid-E Alphaproteobacteria 1,111,523834 [126]
Rickettsia typhi Wilmington Alphaproteobacteria 1,111,496838 [127]
Silicibacter pomeroyi DSS3 Alphaproteobacteria 4,109,4423,810 [128]
Silicibacter speciesTM1040 Alphaproteobacteria 3,200,9383,030Unpublished [1]
Sinorhizobium medicae WSM419 Alphaproteobacteria 3,781,9043,635 [129]
Sinorhizobium meliloti Rm1021 Alphaproteobacteria 3,654,1353,341 [130]
Sphingopyxis alaskensis RB2256 Alphaproteobacteria 3,345,1703,165Unpublished [1]
Wolbachia endosymbiontTRS Alphaproteobacteria 1,080,084805 [131]
Wolbachia pipientis wMel Alphaproteobacteria 1,267,7821,195 [132]
Zymomonas mobilis ZM4 Alphaproteobacteria 2,056,4161,998 [133]

Betaproteobacteria

SpeciesStrainTypeBase PairsGenesReference
Azoarcus sp.EbN1Betaproteobacteria4,296,2304,1282002 [134]
Bordetella bronchiseptica RB50Betaproteobacteria5,339,1795,006Unpublished [1]
Bordetella parapertussis 12822Betaproteobacteria4,773,5514,402Unpublished [1]
Bordetella pertussis TohamaIBetaproteobacteria4,086,1893,806Unpublished [1]
Burkholderia cenocepacia AU1054Betaproteobacteria3,294,5632,965Unpublished [1]
UnspecifiedUnspecifiedBetaproteobacteria2,788,4592,472Unpublished [1]
UnspecifiedUnspecifiedBetaproteobacteria1,196,0941,040Unpublished [1]
Burkholderia mallei ATCC23344Betaproteobacteria3,510,1482,996Unpublished [1]
UnspecifiedUnspecifiedBetaproteobacteria2,325,3792,0292004 [135]
Burkholderia pseudomallei 1710bBetaproteobacteria4,126,2923,736Unpublished [1]
UnspecifiedUnspecifiedBetaproteobacteria3,181,7622,611Unpublished [1]
Burkholderia pseudomallei K96243Betaproteobacteria4,074,542 (chromosome I)
3,173,005 (chromosome II)
3,460 (chromosome I)
2,395 (chromosome II)
2004 [85]
Burkholderia species383Betaproteobacteria3,694,1263,334Unpublished [1]
UnspecifiedUnspecifiedBetaproteobacteria3,587,0823,174Unpublished [1]
UnspecifiedUnspecifiedBetaproteobacteria1,395,0691,209Unpublished [1]
Burkholderia thailandensis E264Betaproteobacteria3,809,2013,2762005 [136]
UnspecifiedUnspecifiedBetaproteobacteria2,914,7712,3582005 [136]
Burkholderia xenovorans LB400Betaproteobacteria4,895,8364,430Unpublished [1]
UnspecifiedUnspecifiedBetaproteobacteria3,363,5232,960Unpublished [1]
UnspecifiedUnspecifiedBetaproteobacteria1,471,7791,312Unpublished [1]
Chromobacterium violaceum ATCC12472Betaproteobacteria4,751,0804,4072003 [137]
Dechloromonas aromatica RCBBetaproteobacteria4,501,1044,171Unpublished [1]
Methylobacillus flagellatus KTBetaproteobacteria2,971,5172,753Unpublished [1]
Neisseria gonorrhoeae FA1090Betaproteobacteria2,153,9222,002Unpublished [1]
Neisseria meningitidis serogroup A strain Z2491Betaproteobacteria2,184,4062,1212000 [138]
Neisseria meningitidis serogroup B strain MC58Betaproteobacteria2,272,3602,0632000 [139]
Nitrosomonas europaea SchmidtBetaproteobacteria2,812,0942,5742003 [140]
Nitrosospira multiformis ATCC25196Betaproteobacteria3,184,2432,757Unpublished [1]
Polaromonas speciesJS666Betaproteobacteria5,200,2644,817Unpublished [1]
Ralstonia eutropha JMP134Betaproteobacteria3,806,5333,439Unpublished [1]
UnspecifiedUnspecifiedBetaproteobacteria2,726,1522,407Unpublished [1]
Ralstonia metallidurans CH34Betaproteobacteria3,928,0893,601Unpublished [1]
UnspecifiedUnspecifiedBetaproteobacteria2,580,0842,313Unpublished [1]
Ralstonia solanacearum GMI1000Betaproteobacteria3,716,4133,4412002 [141]
UnspecifiedUnspecifiedBetaproteobacteria2,094,5091,679 [141]
Rhodoferax ferrireducens DSM15236Betaproteobacteria4,712,3374,170Unpublished [1]
Thiobacillus denitrificans ATCC25259Betaproteobacteria2,909,8092,827Unpublished [1]

Gammaproteobacteria

SpeciesStrainTypeBase PairsGenesReference
Acinetobacter sp.ADP1Gammaproteobacteria3,598,6213,3252004 [142]
Baumannia cicadellinicola HcGammaproteobacteria686,194595Unpublished [1]
Blochmannia floridanus StrainGammaproteobacteria705,5575892003 [143]
Blochmannia pennsylvanicus bpENGammaproteobacteria791,6546102005 [144]
Buchnera aphidicola APSGammaproteobacteria640,6815642000 [145]
Buchnera aphidicola BGammaproteobacteria615,9805042003 [146]
Buchnera aphidicola SgGammaproteobacteria641,4545452002 [147]
Carsonella ruddii PVGammaproteobacteria159,6621822006 [148]
Chromohalobacter salexigensDSM3043Gammaproteobacteria3,696,6493,298Unpublished [1]
Colwellia psychrerythraea 34HGammaproteobacteria5,373,1804,910Unpublished [1]
Coxiella burnetii RSA493Gammaproteobacteria1,995,2812,0162003 [149]
Erwinia carotovora SCRI1043Gammaproteobacteria5,064,0194,492Unpublished [1]
Escherichia coli 536Gammaproteobacteria4,938,9204,685Unpublished [1]
Escherichia coli CFT073Gammaproteobacteria5,231,4285,3792002 [150]
Escherichia coli K-12Gammaproteobacteria4,639,675 (4,646,332)4,331 (4,337)1997, [151] 2005 [152]
Escherichia coli O157:H7Gammaproteobacteria5,528,445 (5,498,450)5,349 (5,361)2001, [153] 1999 [154]
Escherichia coli UTI89Gammaproteobacteria5,065,7415,066Unpublished [1]
Francisella tularensis LVSGammaproteobacteria1,895,9941,967Unpublished [1]
Francisella tularensis SCHUS4Gammaproteobacteria1,892,8191,8042005 [155]
Haemophilus ducreyi 3500HPGammaproteobacteria1,698,9551,717Unpublished [1]
Haemophilus influenzae 86-028NPGammaproteobacteria1,913,4281,7922005 [156]
Haemophilus influenzae RdGammaproteobacteria1,830,1381,7091995 [157]
Hahella chejuensis KCTC2396Gammaproteobacteria7,215,2676,7822005 [158]
Idiomarina loihiensis L2TRGammaproteobacteria2,839,3182,6282004 [159]
Legionella pneumophila LensGammaproteobacteria3,345,6872,9472004 [160]
Legionella pneumophila ParisGammaproteobacteria3,503,6103,0822004 [160]
Legionella pneumophila Philadelphia1Gammaproteobacteria3,397,7542,942Unpublished [1]
Mannheimia succiniciproducens MBEL55EGammaproteobacteria2,314,0782,384Unpublished [1]
Methylococcus capsulatus BathGammaproteobacteria3,304,5612,9602004 [161]
Nitrosococcus oceani ATCC19707Gammaproteobacteria3,481,6912,976Unpublished [1]
Pasteurella multocida Pm70Gammaproteobacteria2,257,4872,0142001 [162]
Photobacterium profundum SS9Gammaproteobacteria4,085,3043,416Unpublished [1]
UnspecifiedUnspecifiedGammaproteobacteria2,237,9431,997Unpublished [1]
Photorhabdus luminescens laumondiiTTO1Gammaproteobacteria5,688,9874,905Unpublished [1]
Pseudoalteromonas haloplanktis TAC125Gammaproteobacteria3,214,9442,9412005 [163]
UnspecifiedUnspecifiedGammaproteobacteria635,328546 [163]
Pseudomonas aeruginosa VRFPA04Gammaproteobacteria6,818,0305,9392016 [164]
Pseudomonas entomophila L48Gammaproteobacteria5,888,7805,168Unpublished [1]
Pseudomonas fluorescens Pf-5Gammaproteobacteria7,074,8936,1372005 [165]
Pseudomonas fluorescens PfO-1Gammaproteobacteria6,438,4055,736Unpublished [1]
Pseudomonas putida KT2440Gammaproteobacteria6,181,8635,3502002 [166]
Pseudomonas syringae B728aGammaproteobacteria6,093,6985,1362005 [167]
Pseudomonas syringae DC3000Gammaproteobacteria6,397,1265,4702003 [168]
Pseudomonas syringae phaseolicola1448AGammaproteobacteria5,928,7874,983Unpublished [1]
Psychrobacter arcticum 273-4Gammaproteobacteria2,650,7012,147Unpublished [1]
Psychrobacter cryohalolentis K5Gammaproteobacteria~3.1Mb2,575 [169]
UnspecifiedUnspecifiedGammaproteobacteria3,059,8762,467Unpublished [1]
Saccharophagus degradans Feb-40Gammaproteobacteria5,057,5314,008Unpublished [1]
Salmonella enterica ATCC9150Gammaproteobacteria4,585,2294,0932004 [170]
Salmonella enterica SCB67Gammaproteobacteria4,755,7004,4452005 [171]
Salmonella enterica Ty2Gammaproteobacteria4,791,9614,3232003 [172]
Salmonella enterica typhiCT18Gammaproteobacteria4,809,0374,6002001 [173]
Salmonella typhimurium LT2Gammaproteobacteria4,857,4324,4522001 [174]
Shewanella denitrificans OS217Gammaproteobacteria4,545,9063,754Unpublished [1]
Shewanella oneidensis MR1Gammaproteobacteria4,969,8034,6302002 [175]
Shigella boydii Sb227Gammaproteobacteria4,519,8234,1422005 [176]
Shigella dysenteriae Sd197Gammaproteobacteria4,369,2324,2772005 [176]
Shigella flexneri 2457TGammaproteobacteria4,599,3544,0732003 [177]
Shigella flexneri 2a301Gammaproteobacteria4,607,2034,4362002 [178]
Shigella sonnei Ss046Gammaproteobacteria4,825,2654,2242005 [176]
Sodalis glossinidius morsitansGammaproteobacteria4,171,1462,4322006 [179]
Thiomicrospira crunogena XCL2Gammaproteobacteria2,427,7342,192Unpublished [1]
Vibrio cholerae N16961Gammaproteobacteria2,961,149 (chromosome I)
1,072,315 (chromosome II)
2,736 (chromosome I)
1,092 (chromosome II)
2000 [180]
Vibrio fischeri ES114Gammaproteobacteria2,906,179 (chromosome I)
1,332,022 (chromosome II)
2,575 (chromosome I)
1,172 (chromosome II)
2005 [181]
Vibrio parahaemolyticus RIMD2210633Gammaproteobacteria3,288,558 (chromosome I)
1,877,212 (chromosome II)
3,080 (chromosome I)
1,752 (chromosome II)
2000 [182]
Vibrio vulnificus CMCP6Gammaproteobacteria3,281,944 (chromosome I)
1,844,853 (chromosome II)
2,973 (chromosome I)
1,565 (chromosome II)
2003 [183]
Vibrio vulnificus YJ016Gammaproteobacteria3,354,505 (chromosome I)
1,857,073 (chromosome II)
3,262 (chromosome I)
1,697 (chromosome II)
2003 [184]
Wigglesworthia glossinidia StrainGammaproteobacteria697,7246112002 [185]
Xanthomonas axonopodis citri306Gammaproteobacteria5,175,5544,3122002 [186]
Xanthomonas campestris 8004Gammaproteobacteria5,148,7084,2732005 [187]
Xanthomonas campestris 8510Gammaproteobacteria5,178,4664,4872005 [188]
Xanthomonas campestris ATCC33913Gammaproteobacteria5,076,1884,1812002 [186]
Xanthomonas oryzae KACC10331Gammaproteobacteria4,941,4394,6372005 [189]
Xanthomonas oryzae MAFF311018Gammaproteobacteria4,940,2174,372Unpublished [1]
Xylella fastidiosa 9a5cGammaproteobacteria2,679,3062,7662000 [190]
Xylella fastidiosa Temecula1Gammaproteobacteria2,519,8022,0342003 [191]
Yersinia pestis AntiquaGammaproteobacteria4,702,2894,1672006 [192]
Yersinia pestis CO-92BiovarOrientalisGammaproteobacteria4,653,7284,0082001 [193]
Yersinia pestis KIMGammaproteobacteria4,600,7554,0902002 [194]
Yersinia pestis MediaevalisGammaproteobacteria4,595,0653,8952004 [195]
Yersinia pseudotuberculosis IP32953Gammaproteobacteria4,744,6713,9742004 [196]

Zetaproteobacteria

MyxococcotaCampylobacterota

SpeciesStrainTypeBase PairsGenesReference
Anaeromyxobacter dehalogenans 2CP-Cdelta-epsilon5,013,4794,346Unpublished [1]
Bdellovibrio bacteriovorus HD100delta-epsilon3,782,9503,5832004 [197]
Campylobacter jejuni NCTC11168delta-epsilon1,641,4811,6432000 [198]
Campylobacter jejuni RM1221delta-epsilon1,777,8311,8382005 [199]
Desulfotalea psychrophila LSv54delta-epsilon3,523,3833,118Unpublished [1]
Desulfovibrio desulfuricans G20delta-epsilon3,730,2323,775Unpublished [1]
Desulfovibrio vulgaris Hildenboroughdelta-epsilon3,570,8583,3792004 [200]
Geobacter metallireducens GS15delta-epsilon3,997,4203,519Unpublished [1]
Geobacter sulfurreducens PCAdelta-epsilon3,814,1393,4472003 [201]
Helicobacter hepaticus ATCC51449delta-epsilon1,799,1461,8752003 [202]
Helicobacter pylori 26695delta-epsilon1,667,8671,5661997 [203]
Helicobacter pylori HPAG1delta-epsilon1,596,3661,536Unpublished [1]
Helicobacter pylori J99delta-epsilon1,643,8311,4911999 [204]
Lawsonia intracellularis PHEMN1-00delta-epsilon1,719,0141,344Unpublished [1]
Lawsonia intracellularis PHE/MN1-00delta-epsilon1,457,619 (chromosome)
27,048 (plasmid A)
39,794 (plasmid B)
194,553 (plasmid C)
1,187
29 (plasmid A)
24 (plasmid B)
104 (plasmid C)
2013 [205]
Myxococcus xanthus DK1622delta-epsilon9,139,7637,331Unpublished [1]
Pelobacter carbinolicus DSM2380delta-epsilon3,665,8933,119Unpublished [1]
Sorangium cellulosum So ce56delta-epsilon13,033,7799,3672007 [206]
Sulfurimonas denitrificans DSM1251delta-epsilon2,201,5612,1042007 [207]
Syntrophus aciditrophicus SBdelta-epsilon3,179,3003,168Unpublished [1]
Thiomicrospira denitrificans ATCC33889delta-epsilon2,201,5612,097Unpublished [1]
Wolinella succino DSMZ1740delta-epsilon2,110,3552,0442003 [208]

Spirochaetota

SpeciesStrainTypeBase PairsGenesReference
Borrelia burgdorferi B31 Spirochaetota 910,724850 [209]
Borrelia garinii PBiSpirochaetota904,246832 [210]
Leptospira interrogans 56601Spirochaetota4,332,2414,358 [211]
UnspecifiedUnspecifiedSpirochaetota358,943367 [211]
Leptospira interrogans FiocruzL1130Spirochaetota4,277,1853,394 [212]
UnspecifiedUnspecifiedSpirochaetota350,181264 [212]
Treponema denticola ATCC35405Spirochaetota2,843,2012,767 [213]
Treponema pallidum NicholsSpirochaetota1,138,0111,031 [214]

Synergistota

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Thermovirga lienii Cas60314, DSM 17291 Synergistia 1,967,774DOE Joint Genome Institute CP003096

Mycoplasmatota

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Mesoplasma florum L1 Mollicutes 793,224683Unpublished [1]
Mycoplasma anatis 1340, ATCC 25524 Mollicutes [215] AFVJ00000000
Mycoplasma capricolum ATCC273 Mollicutes 1,010,023812Unpublished [1]
Mycoplasma gallisepticum R Mollicutes 996,422726 [216]
Mycoplasma genitalium G37 Mollicutes 580,076476 [217]
Mycoplasma haemocanis Illinois Mollicutes 919,992Unpublished CP003199
Mycoplasma hyopneumoniae 232 Mollicutes 892,758691 [218]
Mycoplasma hyopneumoniae 7448 Mollicutes 920,079663 [219]
Mycoplasma hyopneumoniae J Mollicutes 897,405665 [219]
Mycoplasma hyorhinis GDL-1 Mollicutes 837,480Unpublished CP003231
Mycoplasma leachii 99/014/6 Mollicutes 1,017,232Unpublished FR668087
Mycoplasma mobile 163K Mollicutes 777,079635 [220]
Mycoplasma mycoides SC Mollicutes 1,211,7031,016 [221]
Mycoplasma penetrans HF2 Mollicutes 1,358,6331,037 [222]
Mycoplasma pneumoniae M129 Mollicutes 816,394688 [223]
Mycoplasma pulmonis UAB Mollicutes 963,879782 [224]
Mycoplasma synoviae 53 Mollicutes 799,476672 [219]
Phytoplas maasteris AYWB Mollicutes 706,569671Unpublished [1]
Phytoplas maasteris OY Mollicutes 860,631754 [225]
Ureaplasma urealyticum serovar3 Mollicutes 751,719611 [226]

Thermodesulfobacteriota

SpeciesStrainTypeBase PairsGenesReference
Thermodesulfatator indicus CIR29812(T) Thermodesulfobacteriota 2,322,2242,2912012 [227]
Thermodesulfobacterium geofontis OPF15(T) Thermodesulfobacteriota 1,634,3771,6352013 [228]

Thermotogota

SpeciesStrainTypeBase PairsGenesReference
Fervidobacterium nodosum Rt17-B1 Thermotogota 1,950,0001,7502009 [229]
Kosmotoga olearia TBF 19.5.1 Thermotogota 2,302,1262,1182011 [230]
Mesotoga prima MesG1.Ag.4.2 Thermotogota 2,974,229 chromosome
1,724 plasmid
2,7362012 [231]
Thermosipho africanus TCF52B Thermotogota 2,016,6572,0002009 [232]
Thermosipho melanesiensis BI429 Thermotogota 1,920,0001,8792009 [229]
Thermotoga lettingae TMO Thermotogota 2,140,0002,0402009 [229]
Thermotoga maritima MSB8 Thermotogota 1,860,7251,8461999, [233] 2013 [234]
Thermotoga petrophila RKU-1 Thermotogota 1,820,0001,7852009 [229]

See also

Related Research Articles

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<span class="mw-page-title-main">QKI</span> Protein

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<span class="mw-page-title-main">ANAPC5</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">TFDP2</span> Protein-coding gene in the species Homo sapiens

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Uncharacterized protein KIAA1683 is a protein that in humans is encoded by the KIAA1683 gene.

<span class="mw-page-title-main">Mucin 20</span> Protein-coding gene in the species Homo sapiens

Mucin-20 is a protein that in humans is encoded by the MUC20 gene.

<span class="mw-page-title-main">PHC3</span> Protein-coding gene in the species Homo sapiens

Polyhomeotic-like protein 3 is a protein that in humans is encoded by the PHC3 gene.

<span class="mw-page-title-main">APPBP2</span> Protein-coding gene in the species Homo sapiens

Amyloid protein-binding protein 2 is a protein that in humans is encoded by the APPBP2 gene.

<span class="mw-page-title-main">ZNF44</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">USP51</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">Family with sequence similarity 13, member A1</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">GABRG1</span> Protein-coding gene in the species Homo sapiens

Gamma-aminobutyric acid receptor subunit gamma-1 is a protein that in humans is encoded by the GABRG1 gene. The protein encoded by this gene is a subunit of the GABAA receptor.

<span class="mw-page-title-main">EGR4</span> Protein-coding gene in the species Homo sapiens

Early growth response protein 4 (EGR-4), also known as AT133, is a protein that in humans is encoded by the EGR4 gene.

References

  1. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 "Entrez Genome Database Search". National Center for Biotechnology Information. Search for details on specific genomes by organism name and strain.
  2. Tahon G, et al. (2018). "Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples". Syst. Appl. Microbiol. 41 (4): 279–290. doi:10.1016/j.syapm.2018.01.009. PMID   29475572. S2CID   3515091.
  3. Schell MA, et al. (2002). "The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract". Proc. Natl. Acad. Sci. U.S.A. 99 (22): 14422–7. Bibcode:2002PNAS...9914422S. doi: 10.1073/pnas.212527599 . PMC   137899 . PMID   12381787.
  4. Cerdeño-Tárraga AM, et al. (2003). "The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129". Nucleic Acids Res. 31 (22): 6516–23. doi:10.1093/nar/gkg874. PMC   275568 . PMID   14602910.
  5. Nishio Y, et al. (2003). "Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens". Genome Res. 13 (7): 1572–9. doi:10.1101/gr.1285603. PMC   403753 . PMID   12840036.
  6. Tauch A, et al. (2005). "Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora". J Bacteriol. 187 (13): 4671–82. doi:10.1128/JB.187.13.4671-4682.2005. PMC   1151758 . PMID   15968079.
  7. Li L, et al. (2005). "The complete genome sequence of Mycobacterium avium subspecies paratuberculosis". Proc. Natl. Acad. Sci. U.S.A. 102 (35): 12344–9. Bibcode:2005PNAS..10212344L. doi: 10.1073/pnas.0505662102 . PMC   1194940 . PMID   16116077.
  8. Garnier T, et al. (2003). "The complete genome sequence of Mycobacterium bovis". Proc. Natl. Acad. Sci. U.S.A. 100 (13): 7877–82. Bibcode:2003PNAS..100.7877G. doi: 10.1073/pnas.1130426100 . PMC   164681 . PMID   12788972.
  9. Cole ST, et al. (2001). "Massive gene decay in the leprosy bacillus". Nature. 409 (6823): 1007–11. Bibcode:2001Natur.409.1007C. doi:10.1038/35059006. PMID   11234002. S2CID   4307207.
  10. Cole ST, et al. (1998). "Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence". Nature. 393 (6685): 537–44. Bibcode:1998Natur.393..537C. doi: 10.1038/31159 . PMID   9634230.
  11. Ishikawa J, et al. (2004). "The complete genomic sequence of Nocardia farcinica IFM 10152". Proc. Natl. Acad. Sci. U.S.A. 101 (41): 14925–30. Bibcode:2004PNAS..10114925I. doi: 10.1073/pnas.0406410101 . PMC   522048 . PMID   15466710.
  12. Omura S, et al. (2001). "Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites". Proc. Natl. Acad. Sci. U.S.A. 98 (21): 12215–20. Bibcode:2001PNAS...9812215O. doi: 10.1073/pnas.211433198 . PMC   59794 . PMID   11572948.
  13. Redenbach M, et al. (1996). "A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome". Mol Microbiol. 21 (1): 77–96. doi:10.1046/j.1365-2958.1996.6191336.x. PMID   8843436. S2CID   30241692.
  14. Ueda K, et al. (2004). "Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism". Nucleic Acids Res. 32 (16): 4937–44. doi:10.1093/nar/gkh830. PMC   519118 . PMID   15383646.
  15. Deckert G, et al. (1998). "The complete genome of the hyperthermophilic bacterium Aquifex aeolicus". Nature. 392 (6674): 353–8. Bibcode:1998Natur.392..353D. doi: 10.1038/32831 . PMID   9537320.
  16. Cerdeño-Tárraga AM, et al. (2005). "Extensive DNA inversions in the B. fragilis genome control variable gene expression" (PDF). Science. 307 (5714): 1463–5. Bibcode:2005Sci...307.1463C. doi:10.1126/science.1107008. PMID   15746427. S2CID   43623586.
  17. Kuwahara, T; et al. (2004). "Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation". PNAS. 101 (41): 14919–14924. Bibcode:2004PNAS..10114919K. doi: 10.1073/pnas.0404172101 . PMC   522005 . PMID   15466707.
  18. Xu J, et al. (2003). "A genomic view of the human-Bacteroides thetaiotaomicron symbiosis". Science. 299 (5615): 2074–6. Bibcode:2003Sci...299.2074X. doi:10.1126/science.1080029. PMID   12663928. S2CID   34071235.
  19. Schmitz-Esser, S.; et al. (2010). "The genome of the amoeba symbiont Candidatus Amoebophilus asiaticus reveals common mechanisms for host cell interaction among amoeba-associated bacteria". J. Bacteriol. 192 (4): 1045–1057. doi:10.1128/JB.01379-09. PMC   2812958 . PMID   20023027.
  20. Eisen JA, et al. (2002). "The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium". Proc. Natl. Acad. Sci. U.S.A. 99 (14): 9509–14. Bibcode:2002PNAS...99.9509E. doi: 10.1073/pnas.132181499 . PMC   123171 . PMID   12093901.
  21. Xie, G; et al. (June 2007). "Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii". Appl Environ Microbiol. 73 (11): 3536–3546. Bibcode:2007ApEnM..73.3536X. doi:10.1128/AEM.00225-07. PMC   1932680 . PMID   17400776.
  22. Daligault, H.; et al. (2011). "Complete genome sequence of Haliscomenobacter hydrossis type strain (O)". Stand Genomic Sci. 4 (3): 352–360. doi:10.4056/sigs.1964579. PMC   3156403 . PMID   21886862.
  23. Naito, M; et al. (2008). "Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis". DNA Res. 15 (4): 215–225. doi:10.1093/dnares/dsn013. PMC   2575886 . PMID   18524787.
  24. Nelson KE, et al. (2003). "Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83". J Bacteriol. 185 (18): 5591–601. doi:10.1128/JB.185.18.5591-5601.2003. PMC   193775 . PMID   12949112.
  25. Mongodin EF, et al. (2005). "The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea". Proc. Natl. Acad. Sci. U.S.A. 102 (50): 18147–52. Bibcode:2005PNAS..10218147M. doi: 10.1073/pnas.0509073102 . PMC   1312414 . PMID   16330755.
  26. Pena, A; et al. (2010). "Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains". ISME J. 4 (7): 882–895. doi: 10.1038/ismej.2010.6 . PMID   20164864.
  27. van Passel, Mark W. J.; Kant, Ravi; Zoetendal, Erwin G.; Plugge, Caroline M.; Derrien, Muriel; Malfatti, Stephanie A.; Chain, Patrick S. G.; Woyke, Tanja; Palva, Airi (2011-01-01). "The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes". PLOS ONE. 6 (3): e16876. Bibcode:2011PLoSO...616876V. doi: 10.1371/journal.pone.0016876 . ISSN   1932-6203. PMC   3048395 . PMID   21390229.
  28. Caputo, Aurélia; Dubourg, Grégory; Croce, Olivier; Gupta, Sushim; Robert, Catherine; Papazian, Laurent; Rolain, Jean-Marc; Raoult, Didier (2015-02-19). "Whole-genome assembly of Akkermansia muciniphila sequenced directly from human stool". Biology Direct. 10: 5. doi: 10.1186/s13062-015-0041-1 . ISSN   1745-6150. PMC   4333879 . PMID   25888298.
  29. 1 2 Read TD, et al. (2000). "Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39". Nucleic Acids Res. 28 (6): 1397–406. doi:10.1093/nar/28.6.1397. PMC   111046 . PMID   10684935.
  30. Carlson JH, et al. (2005). "Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains". Infection and Immunity. 73 (10): 6407–18. doi:10.1128/IAI.73.10.6407-6418.2005. PMC   1230933 . PMID   16177312.
  31. Stephens RS, et al. (1998). "Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis". Science. 282 (5389): 754–9. Bibcode:1998Sci...282..754S. doi:10.1126/science.282.5389.754. PMID   9784136.
  32. Thomson NR, et al. (2005). "The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation". Genome Res. 15 (5): 629–40. doi:10.1101/gr.3684805. PMC   1088291 . PMID   15837807.
  33. Read TD, et al. (2003). "Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae". Nucleic Acids Res. 31 (8): 2134–47. doi:10.1093/nar/gkg321. PMC   153749 . PMID   12682364.
  34. Azuma, Y.; Hirakawa, H.; Yamashita, A.; Cai, Y.; Rahman, MA.; Suzuki, H.; Mitaku, S.; Toh, H.; et al. (Feb 2006). "Genome sequence of the cat pathogen, Chlamydophila felis". DNA Res. 13 (1): 15–23. doi: 10.1093/dnares/dsi027 . PMID   16766509.
  35. Kalman S, et al. (1999). "Comparative genomes of Chlamydia pneumoniae and C. trachomatis". Nat Genet. 21 (4): 385–9. doi:10.1038/7716. PMID   10192388. S2CID   24629065.
  36. Shirai, M; Hirakawa, H; Ouchi, K; Tabuchi, M; Kishi, F; Kimoto, M; Takeuchi, H; Nishida, J; Shibata, K; Fujinaga, R; Yoneda, H; Matsushima, H; Tanaka, C; Furukawa, S; Miura, K; Nakazawa, A; Ishii, K; Shiba, T; Hattori, M; Kuhara, S; Nakazawa, T (Jun 2000). "Comparison of outer membrane protein genes omp and pmp in the whole genome sequences of Chlamydia pneumoniae isolates from Japan and the United States". J Infect Dis. 181 (Suppl 3): S524–7. doi: 10.1086/315616 . PMID   10839753.
  37. Horn M, et al. (2004). "Illuminating the evolutionary history of chlamydiae". Science. 304 (5671): 728–30. Bibcode:2004Sci...304..728H. doi: 10.1126/science.1096330 . PMID   15073324. S2CID   39036549.
  38. Seshadri R, et al. (2005). "Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes". Science. 307 (5706): 105–8. Bibcode:2005Sci...307..105S. doi:10.1126/science.1102226. PMID   15637277. S2CID   15601443.
  39. Kube M, et al. (2005). "Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1". Nat Biotechnol. 23 (10): 1269–73. doi: 10.1038/nbt1131 . PMID   16116419.
  40. 1 2 Pöritz, M.; Goris, T.; Wubet, T.; Tarkka, MT.; Buscot, F.; Nijenhuis, I.; Lechner, U.; Adrian, L. (Jun 2013). "Genome sequences of two dehalogenation specialists – Dehalococcoides mccartyi strains BTF08 and DCMB5 enriched from the highly polluted Bitterfeld region". FEMS Microbiol Lett. 343 (2): 101–4. doi: 10.1111/1574-6968.12160 . PMID   23600617.
  41. DNA Res. 2001 Oct 31;8(5):205-13, 8(5):205-13; 227-53
  42. 1 2 Allewalt JP, et al. (2006). "Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park". Appl Environ Microbiol. 72 (1): 544–50. Bibcode:2006ApEnM..72..544A. doi:10.1128/AEM.72.1.544-550.2006. PMC   1352173 . PMID   16391090.
  43. Nakamura Y, et al. (2003). "Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids". DNA Res. 10 (4): 137–45. doi: 10.1093/dnares/10.4.137 . PMID   14621292.
  44. 1 2 Rocap G, et al. (2003). "Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation". Nature. 424 (6952): 1042–7. Bibcode:2003Natur.424.1042R. doi: 10.1038/nature01947 . PMID   12917642. S2CID   4344597.
  45. Dufresne A, et al. (2003). "Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome". Proc. Natl. Acad. Sci. U.S.A. 100 (17): 10020–5. Bibcode:2003PNAS..10010020D. doi: 10.1073/pnas.1733211100 . PMC   187748 . PMID   12917486.
  46. Palenik B, et al. (2003). "The genome of a motile marine Synechococcus". Nature. 424 (6952): 1037–42. Bibcode:2003Natur.424.1037P. doi: 10.1038/nature01943 . PMID   12917641.
  47. Kaneko, T.; et al. (1995). "Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence Features in the 1 Mb Region from Map Positions 64% to 92% of the Genome". DNA Res. 2 (4): 153–66. doi: 10.1093/dnares/2.4.153 . PMID   8590279.
  48. Kiss, H; Lang, E; Lapidus, A; Copeland, A; Nolan, M; Glavina Del Rio, T; Chen, F; Lucas, S; Tice, H; Cheng, J. F.; Han, C; Goodwin, L; Pitluck, S; Liolios, K; Pati, A; Ivanova, N; Mavromatis, K; Chen, A; Palaniappan, K; Land, M; Hauser, L; Chang, Y. J.; Jeffries, C. D.; Detter, J. C.; Brettin, T; Spring, S; Rohde, M; Göker, M; Woyke, T; et al. (2010). "Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460)". Standards in Genomic Sciences. 2 (3): 270–9. doi:10.4056/sigs.892105. PMC   3035293 . PMID   21304711.
  49. Pitluck, S; Sikorski, J; Zeytun, A; Lapidus, A; Nolan, M; Lucas, S; Hammon, N; Deshpande, S; Cheng, J. F.; Tapia, R; Han, C; Goodwin, L; Liolios, K; Pagani, I; Ivanova, N; Mavromatis, K; Pati, A; Chen, A; Palaniappan, K; Hauser, L; Chang, Y. J.; Jeffries, C. D.; Detter, J. C.; Brambilla, E; Djao, O. D.; Rohde, M; Spring, S; Göker, M; Woyke, T; et al. (2011). "Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1)". Standards in Genomic Sciences. 4 (1): 54–62. doi:10.4056/sigs.1523807. PMC   3072091 . PMID   21475587.
  50. Takaki, Y; Shimamura, S; Nakagawa, S; Fukuhara, Y; Horikawa, H; Ankai, A; Harada, T; Hosoyama, A; Oguchi, A; Fukui, S; Fujita, N; Takami, H; Takai, K (2010). "Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1". DNA Research. 17 (3): 123–37. doi:10.1093/dnares/dsq005. PMC   2885270 . PMID   20189949.
  51. Lapidus, A; Chertkov, O; Nolan, M; Lucas, S; Hammon, N; Deshpande, S; Cheng, J. F.; Tapia, R; Han, C; Goodwin, L; Pitluck, S; Liolios, K; Pagani, I; Ivanova, N; Huntemann, M; Mavromatis, K; Mikhailova, N; Pati, A; Chen, A; Palaniappan, K; Land, M; Hauser, L; Brambilla, E. M.; Rohde, M; Abt, B; Spring, S; Göker, M; Bristow, J; Eisen, J. A.; et al. (2011). "Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10)". Standards in Genomic Sciences. 5 (1): 86–96. doi:10.4056/sigs.2235024. PMC   3236037 . PMID   22180813.
  52. De Groot, Arjan; et al. (2009). "Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti". PLOS Genet. 5 (3): e1000434. doi: 10.1371/journal.pgen.1000434 . PMC   2669436 . PMID   19370165.
  53. Yuan, M; et al. (2012). "Genome Sequence and Transcriptome Analysis of the Radioresistant Bacterium Deinococcus gobiensis: Insights into the Extreme Environmental Adaptations". PLOS ONE. 7 (3): e34458. Bibcode:2012PLoSO...734458Y. doi: 10.1371/journal.pone.0034458 . PMC   3314630 . PMID   22470573.
  54. White O, et al. (1999). "Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1". Science. 286 (5444): 1571–7. doi:10.1126/science.286.5444.1571. PMC   4147723 . PMID   10567266.
  55. Sikorski, J; et al. (2010). "Complete genome sequence of Meiothermus silvanus type strain (VI-R2)". Stand Genomic Sci. 3 (1): 37–46. doi:10.4056/sigs.1042812. PMC   3035272 . PMID   21304690.
  56. Gounder, Kamini; et al. (2011). "Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01". BMC Genomics. 12: 577. doi: 10.1186/1471-2164-12-577 . PMC   3235269 . PMID   22115438.
  57. Henne A, et al. (2004). "The genome sequence of the extreme thermophile Thermus thermophilus". Nat Biotechnol. 22 (5): 547–53. doi:10.1038/nbt956. PMID   15064768. S2CID   25469576.
  58. Monteiro-Vitorello, CB.; Camargo, LE.; Van Sluys, MA.; Kitajima, JP.; Truffi, D.; do Amaral, AM.; Harakava, R.; de Oliveira, JC.; et al. (Aug 2004). "The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli". Mol Plant Microbe Interact. 17 (8): 827–36. doi: 10.1094/MPMI.2004.17.8.827 . hdl: 11449/67815 . PMID   15305603.
  59. Liu, J.; Cheng, A.; Bangayan, NJ.; Barnard, E.; Curd, E.; Craft, N.; Li, H. (2014). "Draft Genome Sequences of Propionibacterium acnes Type Strain ATCC6919 and Antibiotic-Resistant Strain HL411PA1". Genome Announc. 2 (4): e00740–14. doi:10.1128/genomeA.00740-14. PMC   4132614 . PMID   25125638.
  60. Bentley, SD.; Maiwald, M.; Murphy, LD.; Pallen, MJ.; Yeats, CA.; Dover, LG.; Norbertczak, HT.; Besra, GS.; et al. (Feb 2003). "Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei". Lancet. 361 (9358): 637–44. doi:10.1016/S0140-6736(03)12597-4. PMID   12606174. S2CID   8743326.
  61. Raoult D, et al. (2003). "Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome". Genome Res. 13 (8): 1800–9. doi:10.1101/gr.1474603. PMC   403771 . PMID   12902375 . Retrieved 21 June 2016.
  62. Read TD, et al. (2003). "The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria" (PDF). Nature. 423 (6935): 81–6. Bibcode:2003Natur.423...81R. doi: 10.1038/nature01586 . PMID   12721629. S2CID   504400.
  63. Rasko DA, et al. (2004). "The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1". Nucleic Acids Res. 32 (3): 977–88. doi:10.1093/nar/gkh258. PMC   373394 . PMID   14960714.
  64. Ivanova N, et al. (2003). "Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis". Nature. 423 (6935): 87–91. Bibcode:2003Natur.423...87I. doi: 10.1038/nature01582 . PMID   12721630.
  65. Kobayashi T, et al. (1995). "Purification and properties of an alkaline protease from alkalophilic Bacillus sp. KSM-K16". Appl Microbiol Biotechnol. 43 (3): 473–81. doi:10.1007/BF00218452. PMID   7632397. S2CID   6077293.
  66. Takami H, et al. (1999). "An improved physical and genetic map of the genome of alkaliphilic Bacillus sp. C-125". Extremophiles. 3 (1): 21–8. doi:10.1007/s007920050095. PMID   10086841. S2CID   1180141.
  67. Rey MW, et al. (2004). "Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species". Genome Biol. 5 (10): R77. doi: 10.1186/gb-2004-5-10-r77 . PMC   545597 . PMID   15461803.
  68. 1 2 Veith B, et al. (2004). "The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential". J Mol Microbiol Biotechnol. 7 (4): 204–11. doi: 10.1159/000079829 . PMID   15383718.
  69. Kunst F, et al. (1997). "The complete genome sequence of the gram-positive bacterium Bacillus subtilis". Nature. 390 (6657): 249–56. Bibcode:1997Natur.390..249K. doi: 10.1038/36786 . PMID   9384377.
  70. Han, CS.; Xie, G.; Challacombe, JF.; Altherr, MR.; Bhotika, SS.; Brown, N.; Bruce, D.; Campbell, CS.; et al. (May 2006). "Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis". J Bacteriol. 188 (9): 3382–90. doi:10.1128/JB.188.9.3382-3390.2006. PMC   1447445 . PMID   16621833.
  71. Wu, M.; Ren, Q.; Durkin, AS.; Daugherty, SC.; Brinkac, LM.; Dodson, RJ.; Madupu, R.; Sullivan, SA.; et al. (Nov 2005). "Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901". PLOS Genet. 1 (5): e65. doi: 10.1371/journal.pgen.0010065 . PMC   1287953 . PMID   16311624.
  72. Nölling J, et al. (2001). "Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum". J Bacteriol. 183 (16): 4823–38. doi:10.1128/JB.183.16.4823-4838.2001. PMC   99537 . PMID   11466286.
  73. Shimizu T, et al. (2002). "Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater". Proc. Natl. Acad. Sci. U.S.A. 99 (2): 996–1001. Bibcode:2002PNAS...99..996S. doi: 10.1073/pnas.022493799 . PMC   117419 . PMID   11792842.
  74. Bruggemann H, et al. (2003). "The genome sequence of Clostridium tetani, the causative agent of tetanus disease". Proc. Natl. Acad. Sci. U.S.A. 100 (3): 1316–21. Bibcode:2003PNAS..100.1316B. doi: 10.1073/pnas.0335853100 . PMC   298770 . PMID   12552129.
  75. Nonaka H, et al. (2006). "Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195". J Bacteriol. 188 (6): 2262–74. doi:10.1128/JB.188.6.2262-2274.2006. PMC   1428132 . PMID   16513756.
  76. Paulsen IT, et al. (2003). "Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis". Science. 299 (5615): 2071–4. Bibcode:2003Sci...299.2071P. doi:10.1126/science.1080613. PMID   12663927. S2CID   45480495.
  77. Takami H, et al. (2004). "Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus". Nucleic Acids Res. 32 (21): 6292–303. doi:10.1093/nar/gkh970. PMC   535678 . PMID   15576355.
  78. Altermann E, et al. (2005). "Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM". Proc. Natl. Acad. Sci. U.S.A. 102 (11): 3906–12. Bibcode:2005PNAS..102.3906A. doi: 10.1073/pnas.0409188102 . PMC   554803 . PMID   15671160.
  79. 1 2 Pridmore RD, et al. (2004). "The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533". Proc. Natl. Acad. Sci. U.S.A. 101 (8): 2512–7. Bibcode:2004PNAS..101.2512P. doi: 10.1073/pnas.0307327101 . PMC   356981 . PMID   14983040.
  80. Bolotin A, et al. (2001). "The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403". Genome Res. 11 (5): 731–53. doi:10.1101/gr.gr-1697r. PMC   311110 . PMID   11337471.
  81. 1 2 Glaser P, et al. (2001). "Comparative genomics of Listeria species". Science. 294 (5543): 849–52. Bibcode:1976Sci...192..801S. doi:10.1126/science.1063447. PMID   11679669. S2CID   40718381.
  82. Nelson KE, et al. (2004). "Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species". Nucleic Acids Res. 32 (8): 2386–95. doi:10.1093/nar/gkh562. PMC   419451 . PMID   15115801.
  83. Lu, J; Nogi, Y; Takami, H (2001). "Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge". FEMS Microbiol Lett. 205 (2): 291–7. doi: 10.1111/j.1574-6968.2001.tb10963.x . PMID   11750818.
  84. 1 2 Gill SR, et al. (2005). "Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain". J Bacteriol. 187 (7): 2426–38. doi:10.1128/JB.187.7.2426-2438.2005. PMC   1065214 . PMID   15774886.
  85. 1 2 3 Holden MT, et al. (2004). "Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance". Proc. Natl. Acad. Sci. U.S.A. 101 (26): 9786–91. Bibcode:2004PNAS..101.9786H. doi: 10.1073/pnas.0402521101 . PMC   470752 . PMID   15213324.
  86. 1 2 Kuroda M, et al. (2001). "Whole genome sequencing of meticillin-resistant Staphylococcus aureus". Lancet. 357 (9264): 1225–40. doi:10.1016/S0140-6736(00)04403-2. PMID   11418146. S2CID   25076109.
  87. Baba T, et al. (2002). "Genome and virulence determinants of high virulence community-acquired MRSA". Lancet. 359 (9320): 1819–27. doi:10.1016/S0140-6736(02)08713-5. PMID   12044378. S2CID   4657920.
  88. Diep BA, et al. (2006). "Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus". Lancet. 367 (9512): 731–9. doi:10.1016/S0140-6736(06)68231-7. PMID   16517273. S2CID   30038673.
  89. Takeuchi F, et al. (2005). "Whole-genome sequencing of Staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species". J Bacteriol. 187 (21): 7292–308. doi:10.1128/JB.187.21.7292-7308.2005. PMC   1272970 . PMID   16237012.
  90. Kuroda M, et al. (2005). "Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection". Proc. Natl. Acad. Sci. U.S.A. 102 (37): 13272–7. Bibcode:2005PNAS..10213272K. doi: 10.1073/pnas.0502950102 . PMC   1201578 . PMID   16135568.
  91. Tettelin H, et al. (2005). "Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"". Proc. Natl. Acad. Sci. U.S.A. 102 (39): 13950–5. Bibcode:2005PNAS..10213950T. doi: 10.1073/pnas.0506758102 . PMC   1216834 . PMID   16172379.
  92. Glaser P, et al. (2002). "Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease". Mol Microbiol. 45 (6): 1499–513. doi: 10.1046/j.1365-2958.2002.03126.x . PMID   12354221. S2CID   25189736.
  93. Tettelin H, et al. (2002). "Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae". Proc. Natl. Acad. Sci. U.S.A. 99 (19): 12391–6. Bibcode:2002PNAS...9912391T. doi: 10.1073/pnas.182380799 . PMC   129455 . PMID   12200547.
  94. Ajdić D, et al. (2002). "Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen". Proc. Natl. Acad. Sci. U.S.A. 99 (22): 14434–9. Bibcode:2002PNAS...9914434A. doi: 10.1073/pnas.172501299 . PMC   137901 . PMID   12397186.
  95. Hoskins J, et al. (2001). "Genome of the bacterium Streptococcus pneumoniae strain R6". J Bacteriol. 183 (19): 5709–17. doi:10.1128/JB.183.19.5709-5717.2001. PMC   95463 . PMID   11544234.
  96. Tettelin H, et al. (2001). "Complete genome sequence of a virulent isolate of Streptococcus pneumoniae". Science. 293 (5529): 498–506. CiteSeerX   10.1.1.318.395 . doi:10.1126/science.1061217. PMID   11463916. S2CID   714948.
  97. 1 2 3 4 Beres SB, et al. (2006). "Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus". Proc. Natl. Acad. Sci. U.S.A. 103 (18): 7059–64. Bibcode:2006PNAS..103.7059B. doi: 10.1073/pnas.0510279103 . PMC   1459018 . PMID   16636287.
  98. Banks DJ, et al. (2004). "Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain". J Infect Dis. 190 (4): 727–38. doi: 10.1086/422697 . PMID   15272401.
  99. Beres SB, et al. (2002). "Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence". Proc. Natl. Acad. Sci. U.S.A. 99 (15): 10078–83. Bibcode:2002PNAS...9910078B. doi: 10.1073/pnas.152298499 . PMC   126627 . PMID   12122206.
  100. Sumby P, et al. (2005). "Evolutionary origin and emergence of a highly successful clone of serotype M1 group a Streptococcus involved multiple horizontal gene transfer events". J Infect Dis. 192 (5): 771–82. doi: 10.1086/432514 . PMID   16088826.
  101. Green NM, et al. (2005). "Genome sequence of a serotype M28 strain of group A Streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity". J Infect Dis. 192 (5): 760–70. doi: 10.1086/430618 . PMID   16088825.
  102. Smoot JC, et al. (2002). "Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks". Proc. Natl. Acad. Sci. U.S.A. 99 (7): 4668–73. Bibcode:2002PNAS...99.4668S. doi: 10.1073/pnas.062526099 . PMC   123705 . PMID   11917108.
  103. Ferretti JJ, et al. (2001). "Complete genome sequence of an M1 strain of Streptococcus pyogenes". Proc. Natl. Acad. Sci. U.S.A. 98 (8): 4658–63. Bibcode:2001PNAS...98.4658F. doi: 10.1073/pnas.071559398 . PMC   31890 . PMID   11296296.
  104. Nakagawa I, et al. (2003). "Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution". Genome Res. 13 (6A): 1042–55. doi:10.1101/gr.1096703. PMC   403657 . PMID   12799345.
  105. 1 2 Bolotin A, et al. (2004). "Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus". Nat Biotechnol. 22 (12): 1554–8. doi: 10.1038/nbt1034 . PMC   7416660 . PMID   15543133.
  106. Kapatral V, et al. (2002). "Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586". J Bacteriol. 184 (7): 2005–18. doi:10.1128/JB.184.7.2005-2018.2002. PMC   134920 . PMID   11889109.
  107. Goodner B, et al. (2001). "Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58". Science. 294 (5550): 2323–8. Bibcode:2001Sci...294.2323G. doi:10.1126/science.1066803. PMID   11743194. S2CID   86255214.
  108. Brayton KA, et al. (2005). "Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins". Proc. Natl. Acad. Sci. U.S.A. 102 (3): 844–9. Bibcode:2005PNAS..102..844B. doi: 10.1073/pnas.0406656102 . PMC   545514 . PMID   15618402.
  109. 1 2 3 Dunning Hotopp JC, et al. (2006). "Comparative genomics of emerging human ehrlichiosis agents". PLOS Genet. 2 (2): e21. doi: 10.1371/journal.pgen.0020021 . PMC   1366493 . PMID   16482227.
  110. 1 2 Alsmark CM, et al. (2004). "The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae". Proc. Natl. Acad. Sci. U.S.A. 101 (26): 9716–21. Bibcode:2004PNAS..101.9716A. doi: 10.1073/pnas.0305659101 . PMC   470741 . PMID   15210978.
  111. Kaneko T, et al. (2002). "Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110". DNA Res. 9 (6): 189–97. doi: 10.1093/dnares/9.6.189 . PMID   12597275.
  112. 1 2 Chain PS, et al. (2005). "Whole-genome analyses of speciation events in pathogenic Brucellae". Infection and Immunity. 73 (12): 8353–61. doi:10.1128/IAI.73.12.8353-8361.2005. PMC   1307078 . PMID   16299333.
  113. 1 2 Halling SM, et al. (2005). "Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis". J Bacteriol. 187 (8): 2715–26. doi:10.1128/JB.187.8.2715-2726.2005. PMC   1070361 . PMID   15805518.
  114. 1 2 DelVecchio VG, et al. (2002). "The genome sequence of the facultative intracellular pathogen Brucella melitensis". Proc. Natl. Acad. Sci. U.S.A. 99 (1): 443–8. Bibcode:2002PNAS...99..443D. doi: 10.1073/pnas.221575398 . PMC   117579 . PMID   11756688.
  115. 1 2 Paulsen IT, et al. (2002). "The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts". Proc. Natl. Acad. Sci. U.S.A. 99 (20): 13148–53. Bibcode:2002PNAS...9913148P. doi: 10.1073/pnas.192319099 . PMC   130601 . PMID   12271122.
  116. Nierman WC, et al. (2001). "Complete genome sequence of Caulobacter crescentus". Proc. Natl. Acad. Sci. U.S.A. 98 (7): 4136–41. Bibcode:2001PNAS...98.4136N. doi: 10.1073/pnas.061029298 . PMC   31192 . PMID   11259647.
  117. Collins NE, et al. (2005). "The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number". Proc. Natl. Acad. Sci. U.S.A. 102 (3): 838–43. Bibcode:2005PNAS..102..838C. doi: 10.1073/pnas.0406633102 . PMC   545511 . PMID   15637156.
  118. Prust C, et al. (2005). "Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans". Nat Biotechnol. 23 (2): 195–200. doi: 10.1038/nbt1062 . PMID   15665824.
  119. Matsunaga T, et al. (2005). "Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1". DNA Res. 12 (3): 157–66. doi: 10.1093/dnares/dsi002 . PMID   16303747.
  120. Kaneko T, et al. (2000). "Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti". DNA Res. 7 (6): 331–8. doi: 10.1093/dnares/7.6.331 . PMID   11214968.
  121. Giovannoni SJ, et al. (2005). "Genome streamlining in a cosmopolitan oceanic bacterium". Science. 309 (5738): 1242–5. Bibcode:2005Sci...309.1242G. doi:10.1126/science.1114057. PMID   16109880. S2CID   16221415.
  122. González V, et al. (2006). "The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons". Proc. Natl. Acad. Sci. U.S.A. 103 (10): 3834–9. Bibcode:2006PNAS..103.3834G. doi: 10.1073/pnas.0508502103 . PMC   1383491 . PMID   16505379.
  123. Larimer FW, et al. (2004). "Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris". Nat Biotechnol. 22 (1): 55–61. doi: 10.1038/nbt923 . PMID   14704707.
  124. Ogata H, et al. (2000). "Selfish DNA in protein-coding genes of Rickettsia". Science. 290 (5490): 347–50. Bibcode:2000Sci...290..347O. doi:10.1126/science.290.5490.347. PMID   11030655.
  125. Ogata H, et al. (2005). "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite". PLOS Biol. 3 (8): e248. doi: 10.1371/journal.pbio.0030248 . PMC   1166351 . PMID   15984913.
  126. Andersson SG, et al. (1998). "The genome sequence of Rickettsia prowazekii and the origin of mitochondria". Nature. 396 (6707): 133–40. Bibcode:1998Natur.396..133A. doi: 10.1038/24094 . PMID   9823893.
  127. McLeod MP, et al. (2004). "Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae". J Bacteriol. 186 (17): 5842–55. doi:10.1128/JB.186.17.5842-5855.2004. PMC   516817 . PMID   15317790.
  128. Moran MA, et al. (2004). "Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment". Nature. 432 (7019): 910–3. Bibcode:2004Natur.432..910M. doi: 10.1038/nature03170 . PMID   15602564.
  129. "Home - Sinorhizobium medicae WSM419".
  130. Capela D, et al. (2001). "Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021". Proc. Natl. Acad. Sci. U.S.A. 98 (17): 9877–82. Bibcode:2001PNAS...98.9877C. doi: 10.1073/pnas.161294398 . PMC   55546 . PMID   11481430.
  131. Foster J, et al. (2005). "The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode". PLOS Biol. 3 (4): e121. doi: 10.1371/journal.pbio.0030121 . PMC   1069646 . PMID   15780005.
  132. Wu M, et al. (2004). "Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements". PLOS Biol. 2 (3): E69. doi: 10.1371/journal.pbio.0020069 . PMC   368164 . PMID   15024419.
  133. Seo JS, et al. (2005). "The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4". Nat Biotechnol. 23 (1): 63–8. doi:10.1038/nbt1045. PMC   6870993 . PMID   15592456.
  134. Rabus R, et al. (2002). "Genes involved in the anaerobic degradation of ethylbenzene in a denitrifying bacterium, strain EbN1". Arch Microbiol. 178 (6): 506–16. doi:10.1007/s00203-002-0487-2. PMID   12420173. S2CID   34316083.
  135. Nierman WC, et al. (2004). "Structural flexibility in the Burkholderia mallei genome". Proc. Natl. Acad. Sci. U.S.A. 101 (39): 14246–51. Bibcode:2004PNAS..10114246N. doi: 10.1073/pnas.0403306101 . PMC   521142 . PMID   15377793.
  136. 1 2 BMC Genomics. 2005 Dec 7, Dec
  137. Brazilian National Genome Project Consortium. (2003). "The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability". Proc. Natl. Acad. Sci. U.S.A. 100 (20): 11660–5. Bibcode:2003PNAS..10011660.. doi: 10.1073/pnas.1832124100 . PMC   208814 . PMID   14500782.
  138. Parkhill J, et al. (2000). "Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491". Nature. 404 (6777): 502–6. Bibcode:2000Natur.404..502P. doi:10.1038/35006655. PMID   10761919. S2CID   4430718.
  139. Tettelin H, et al. (2000). "Complete genome sequence of Neisseria meningitidis serogroup B strain MC58". Science. 287 (5459): 1809–15. Bibcode:2000Sci...287.1809.. doi:10.1126/science.287.5459.1809. PMID   10710307.
  140. Chain P, et al. (2003). "Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea". J Bacteriol. 185 (9): 2759–73. doi:10.1128/JB.185.9.2759-2773.2003. PMC   154410 . PMID   12700255.
  141. 1 2 Salanoubat M, et al. (2002). "Genome sequence of the plant pathogen Ralstonia solanacearum". Nature. 415 (6871): 497–502. doi: 10.1038/415497a . PMID   11823852.
  142. Barbe V, et al. (2004). "Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium". Nucleic Acids Res. 32 (19): 5766–79. doi:10.1093/nar/gkh910. PMC   528795 . PMID   15514110.
  143. Gil R, et al. (2003). "The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes". Proc. Natl. Acad. Sci. U.S.A. 100 (16): 9388–93. Bibcode:2003PNAS..100.9388G. doi: 10.1073/pnas.1533499100 . PMC   170928 . PMID   12886019.
  144. Degnan PH, et al. (2005). "Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects". Genome Res. 15 (8): 1023–33. doi:10.1101/gr.3771305. PMC   1182215 . PMID   16077009.
  145. Shigenobu S, et al. (2000). "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS". Nature. 407 (6800): 81–6. Bibcode:2000Natur.407...81S. doi: 10.1038/35024074 . PMID   10993077.
  146. van Ham RC, et al. (2003). "Reductive genome evolution in Buchnera aphidicola". Proc. Natl. Acad. Sci. U.S.A. 100 (2): 581–6. Bibcode:2003PNAS..100..581V. doi: 10.1073/pnas.0235981100 . PMC   141039 . PMID   12522265.
  147. Tamas I, et al. (2002). "50 million years of genomic stasis in endosymbiotic bacteria". Science. 296 (5577): 2376–9. Bibcode:2002Sci...296.2376T. doi:10.1126/science.1071278. PMID   12089438. S2CID   19226473.
  148. Nakabachi A, et al. (2006). "The 160-kilobase genome of the bacterial endosymbiont Carsonella". Science. 314 (5797): 267. doi:10.1126/science.1134196. PMID   17038615. S2CID   44570539.
  149. Seshadri R, et al. (2003). "Complete genome sequence of the Q-fever pathogen Coxiella burnetii". Proc. Natl. Acad. Sci. U.S.A. 100 (9): 5455–60. Bibcode:2003PNAS..100.5455S. doi: 10.1073/pnas.0931379100 . PMC   154366 . PMID   12704232.
  150. Welch RA, et al. (2002). "Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 17020–4. Bibcode:2002PNAS...9917020W. doi: 10.1073/pnas.252529799 . PMC   139262 . PMID   12471157.{{cite journal}}: CS1 maint: numeric names: authors list (link)
  151. Blattner FR, et al. (1997). "The complete genome sequence of Escherichia coli K-12". Science. 277 (5331): 1453–74. doi: 10.1126/science.277.5331.1453 . PMID   9278503.{{cite journal}}: CS1 maint: numeric names: authors list (link)
  152. Riley M, et al. (2006). "Escherichia coli K-12: a cooperatively developed annotation snapshot—2005". Nucleic Acids Res. 34 (1): 1–9. doi:10.1093/nar/gkj405. PMC   1325200 . PMID   16397293.
  153. Perna NT, et al. (2001). "Genome sequence of enterohaemorrhagic Escherichia coli O157:H7". Nature. 409 (6819): 529–33. Bibcode:2001Natur.409..529P. doi: 10.1038/35054089 . PMID   11206551.
  154. Makino, K.; et al. (1999). "Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak". Genes and Genetic Systems. 74 (5): 227–39. doi: 10.1266/ggs.74.227 . PMID   10734605.
  155. Larsson P, et al. (2005). "The complete genome sequence of Francisella tularensis, the causative agent of tularemia". Nat Genet. 37 (2): 153–9. doi: 10.1038/ng1499 . PMID   15640799.
  156. Harrison A, et al. (2005). "Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20". J Bacteriol. 187 (13): 4627–36. doi:10.1128/JB.187.13.4627-4636.2005. PMC   1151754 . PMID   15968074.
  157. Fleischmann RD, et al. (1995). "Whole-genome random sequencing and assembly of Haemophilus influenzae Rd". Science. 269 (5223): 496–512. Bibcode:1995Sci...269..496F. doi:10.1126/science.7542800. PMID   7542800.
  158. Jeong H, et al. (2005). "Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent". Nucleic Acids Res. 33 (22): 7066–73. doi:10.1093/nar/gki1016. PMC   1312362 . PMID   16352867.
  159. Hou S, et al. (2004). "Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy". Proc. Natl. Acad. Sci. U.S.A. 101 (52): 18036–41. Bibcode:2004PNAS..10118036H. doi: 10.1073/pnas.0407638102 . PMC   539801 . PMID   15596722.
  160. 1 2 Cazalet C, et al. (2004). "Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity". Nat Genet. 36 (11): 1165–73. doi: 10.1038/ng1447 . PMID   15467720.
  161. Ward N, et al. (2004). "Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)". PLOS Biol. 2 (10): e303. doi: 10.1371/journal.pbio.0020303 . PMC   517821 . PMID   15383840.
  162. May BJ, et al. (2001). "Complete genomic sequence of Pasteurella multocida, Pm70". Proc. Natl. Acad. Sci. U.S.A. 98 (6): 3460–5. Bibcode:2001PNAS...98.3460M. doi: 10.1073/pnas.051634598 . PMC   30675 . PMID   11248100.
  163. 1 2 Médigue C, et al. (2005). "Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125". Genome Res. 15 (10): 1325–35. doi:10.1101/gr.4126905. PMC   1240074 . PMID   16169927.
  164. Murugan N (2016). "Unraveling genomic and phenotypic nature of multidrug-resistant (MDR) Pseudomonas aeruginosa VRFPA04 isolated from keratitis patient". Microbiological Research. 193: 959–64. doi: 10.1016/j.micres.2016.10.002 . PMID   27825482.
  165. Paulsen IT, et al. (2005). "Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5". Nat Biotechnol. 23 (7): 873–8. doi: 10.1038/nbt1110 . PMC   7416659 . PMID   15980861.
  166. Nelson KE, et al. (2002). "Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440". Environ Microbiol. 4 (12): 799–808. doi:10.1046/j.1462-2920.2002.00366.x. PMID   12534463.
  167. Feil H, et al. (2005). "Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000". Proc. Natl. Acad. Sci. U.S.A. 102 (31): 11064–9. Bibcode:2005PNAS..10211064F. doi: 10.1073/pnas.0504930102 . PMC   1182459 . PMID   16043691.
  168. Buell CR, et al. (2003). "The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000". Proc. Natl. Acad. Sci. U.S.A. 100 (18): 10181–6. Bibcode:2003PNAS..10010181B. doi: 10.1073/pnas.1731982100 . PMC   193536 . PMID   12928499.
  169. "Psychrobacter cryohalolentis - microbewiki".
  170. McClelland M, et al. (2004). "Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid". Nat Genet. 36 (12): 1268–74. doi:10.1038/ng1470. PMID   15531882. S2CID   25129295.
  171. Chiu CH, et al. (2005). "The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen". Nucleic Acids Res. 33 (5): 1690–8. doi:10.1093/nar/gki297. PMC   1069006 . PMID   15781495.
  172. Deng W, et al. (2003). "Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18". J Bacteriol. 185 (7): 2330–7. doi:10.1128/JB.185.7.2330-2337.2003. PMC   151493 . PMID   12644504.
  173. Parkhill J, et al. (2001). "Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18". Nature. 413 (6858): 848–52. Bibcode:2001Natur.413..848P. doi: 10.1038/35101607 . PMID   11677608.
  174. McClelland M, et al. (2001). "Complete genome sequence of Salmonella enterica serovar Typhimurium LT2". Nature. 413 (6858): 852–6. Bibcode:2001Natur.413..852M. doi: 10.1038/35101614 . PMID   11677609.
  175. Heidelberg JF, et al. (2002). "Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis". Nat Biotechnol. 20 (11): 1118–23. doi: 10.1038/nbt749 . PMID   12368813.
  176. 1 2 3 Yang F, et al. (2005). "Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery". Nucleic Acids Res. 33 (19): 6445–58. doi:10.1093/nar/gki954. PMC   1278947 . PMID   16275786.
  177. Wei J, et al. (2003). "Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T". Infection and Immunity. 71 (5): 2775–86. doi:10.1128/IAI.71.5.2775-2786.2003. PMC   153260 . PMID   12704152.
  178. Jin Q, et al. (2002). "Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157". Nucleic Acids Res. 30 (20): 4432–41. doi:10.1093/nar/gkf566. PMC   137130 . PMID   12384590.
  179. Toh H, et al. (2006). "Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host". Genome Res. 16 (2): 149–56. doi:10.1101/gr.4106106. PMC   1361709 . PMID   16365377.
  180. Heidelberg JF, et al. (2000). "DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae". Nature. 406 (6795): 477–83. Bibcode:2000Natur.406..477H. doi: 10.1038/35020000 . PMC   8288016 . PMID   10952301.
  181. Ruby EG, et al. (2005). "Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners". Proc. Natl. Acad. Sci. U.S.A. 102 (8): 3004–9. Bibcode:2005PNAS..102.3004R. doi: 10.1073/pnas.0409900102 . PMC   549501 . PMID   15703294.
  182. Nasu H, et al. (1 June 2000). "A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains". J Clin Microbiol. 38 (6): 2156–61. doi:10.1128/JCM.38.6.2156-2161.2000. PMC   86752 . PMID   10834969.
  183. Kim YR, et al. (2003). "Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients". Infection and Immunity. 71 (10): 5461–71. doi:10.1128/IAI.71.10.5461-5471.2003. PMC   201039 . PMID   14500463.
  184. Chen CY, et al. (2003). "Comparative genome analysis of Vibrio vulnificus, a marine pathogen". Genome Res. 13 (12): 2577–87. doi:10.1101/gr.1295503. PMC   403799 . PMID   14656965.
  185. Akman L, et al. (2002). "Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia". Nat Genet. 32 (3): 402–7. doi: 10.1038/ng986 . PMID   12219091. S2CID   20604183.
  186. 1 2 da Silva AC, et al. (2002). "Comparison of the genomes of two Xanthomonas pathogens with differing host specificities". Nature. 417 (6887): 459–63. Bibcode:2002Natur.417..459D. doi:10.1038/417459a. PMID   12024217. S2CID   4302762.
  187. Qian W, et al. (2005). "Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris". Genome Res. 15 (6): 757–67. doi:10.1101/gr.3378705. PMC   1142466 . PMID   15899963.
  188. Thieme F, et al. (2005). "Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence". J Bacteriol. 187 (21): 7254–66. doi:10.1128/JB.187.21.7254-7266.2005. PMC   1272972 . PMID   16237009.
  189. Lee BM, et al. (2005). "The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice". Nucleic Acids Res. 33 (2): 577–86. doi:10.1093/nar/gki206. PMC   548351 . PMID   15673718.
  190. Simpson, A.J.C.; et al. (2000). "The genome sequence of the plant pathogen Xylella fastidiosa". Nature. 406 (6792): 151–7. Bibcode:2000Natur.406..151S. doi: 10.1038/35018003 . PMID   10910347.
  191. Van Sluys MA, et al. (2003). "Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa". J Bacteriol. 185 (3): 1018–26. doi:10.1128/JB.185.3.1018-1026.2003. PMC   142809 . PMID   12533478.
  192. Chain PS, et al. (2006). "Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen". J Bacteriol. 188 (12): 4453–63. doi:10.1128/JB.00124-06. PMC   1482938 . PMID   16740952.
  193. Parkhill J, et al. (2001). "Genome sequence of Yersinia pestis, the causative agent of plague". Nature. 413 (6855): 523–7. Bibcode:2001Natur.413..523P. doi: 10.1038/35097083 . PMID   11586360.
  194. Deng W, et al. (2002). "Genome sequence of Yersinia pestis KIM". J Bacteriol. 184 (16): 4601–11. doi:10.1128/JB.184.16.4601-4611.2002. PMC   135232 . PMID   12142430.
  195. Song Y, et al. (2004). "Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans". DNA Res. 11 (3): 179–97. doi: 10.1093/dnares/11.3.179 . PMID   15368893.
  196. Chain PS, et al. (2004). "Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis". Proc. Natl. Acad. Sci. U.S.A. 101 (38): 13826–31. Bibcode:2004PNAS..10113826C. doi: 10.1073/pnas.0404012101 . PMC   518763 . PMID   15358858.
  197. Rendulic S, et al. (2004). "A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective". Science. 303 (5658): 689–92. Bibcode:2004Sci...303..689R. doi:10.1126/science.1093027. PMID   14752164. S2CID   38154836.
  198. Parkhill J, et al. (2000). "The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences". Nature. 403 (6770): 665–8. Bibcode:2000Natur.403..665P. doi: 10.1038/35001088 . PMID   10688204.
  199. Fouts DE, et al. (2005). "Major structural differences and novel potential virulence mechanisms from the genomes of multiple Campylobacter species". PLOS Biol. 3 (1): e15. doi: 10.1371/journal.pbio.0030015 . PMC   539331 . PMID   15660156.
  200. Heidelberg JF, et al. (2004). "The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough". Nat Biotechnol. 22 (5): 554–9. doi: 10.1038/nbt959 . PMID   15077118.
  201. Methé BA, et al. (2003). "Genome of Geobacter sulfurreducens: metal reduction in subsurface environments". Science. 302 (5652): 1967–9. Bibcode:2003Sci...302.1967M. CiteSeerX   10.1.1.186.3786 . doi:10.1126/science.1088727. PMID   14671304. S2CID   38404097.
  202. Suerbaum S, et al. (2003). "The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus". Proc. Natl. Acad. Sci. U.S.A. 100 (13): 7901–6. Bibcode:2003PNAS..100.7901S. doi: 10.1073/pnas.1332093100 . PMC   164685 . PMID   12810954.
  203. Tomb JF, et al. (1997). "The complete genome sequence of the gastric pathogen Helicobacter pylori". Nature. 388 (6642): 539–47. Bibcode:1997Natur.388..539T. doi: 10.1038/41483 . PMID   9252185.
  204. Alm RA, et al. (1999). "Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori". Nature. 397 (6715): 176–80. Bibcode:1999Natur.397..176A. doi:10.1038/16495. PMID   9923682. S2CID   4317442.
  205. Vannucci, Fabio Augusto (2013). Proliferative Enteropathy: Pathogenesis and Host Adaptation (Ph.D. dissertation). University of Minnesota.
  206. Schneiker; et al. (2007). "Complete genome sequence of the myxobacterium Sorangium cellulosum". Nature Biotechnology. 25 (11): 1281–1289. doi: 10.1038/nbt1354 . PMID   17965706.
  207. Sievert, S. M.; K. M. Scott; M. G. Klotz; P. S. G. Chain; L. J. Hauser; J. Hemp; M. Hugler; M. Land; A. Lapidus; F. W. Larimer; S. Lucas; S. A. Malfatti; F. Meyer; I. T. Paulsen; Q. Ren; J. Simon; the USF Genomics Class (December 2007). "Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificans". Applied and Environmental Microbiology. 74 (4): 1145–1156. doi:10.1128/AEM.01844-07. ISSN   0099-2240. PMC   2258580 . PMID   18065616.
  208. Baar C, et al. (2003). "Complete genome sequence and analysis of Wolinella succinogenes". Proc. Natl. Acad. Sci. U.S.A. 100 (20): 11690–5. Bibcode:2003PNAS..10011690B. doi: 10.1073/pnas.1932838100 . PMC   208819 . PMID   14500908.
  209. Fraser CM, et al. (1997). "Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi". Nature. 390 (6660): 580–6. Bibcode:1997Natur.390..580F. doi: 10.1038/37551 . PMID   9403685. S2CID   4388492.
  210. Glöckner G, et al. (2004). "Comparative analysis of the Borrelia garinii genome". Nucleic Acids Res. 32 (20): 6038–46. doi:10.1093/nar/gkh953. PMC   534632 . PMID   15547252.
  211. 1 2 Ren SX, et al. (2003). "Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing". Nature. 422 (6934): 888–93. Bibcode:2003Natur.422..888R. doi: 10.1038/nature01597 . PMID   12712204.
  212. 1 2 Nascimento AL, et al. (2004). "Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis". J Bacteriol. 186 (7): 2164–72. doi:10.1128/JB.186.7.2164-2172.2004. PMC   374407 . PMID   15028702.
  213. Seshadri R, et al. (2004). "Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes". Proc. Natl. Acad. Sci. U.S.A. 101 (15): 5646–51. Bibcode:2004PNAS..101.5646S. doi: 10.1073/pnas.0307639101 . PMC   397461 . PMID   15064399.
  214. Fraser CM, et al. (1998). "Complete genome sequence of Treponema pallidum, the syphilis spirochete". Science. 281 (5375): 375–88. Bibcode:1998Sci...281..375F. doi:10.1126/science.281.5375.375. PMID   9665876.
  215. Guo, Z; et al. (Oct 2011). "Genome sequence of duck pathogen Mycoplasma anatis strain 1340". J. Bacteriol. 193 (20): 5883–5884. doi:10.1128/jb.05891-11. PMC   3187216 . PMID   21952548.
  216. Papazisi L, et al. (2003). "The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain R(low)". Microbiology. 149 (Pt 9): 2307–16. doi: 10.1099/mic.0.26427-0 . PMID   12949158.
  217. Fraser CM, et al. (1995). "The minimal gene complement of Mycoplasma genitalium". Science. 270 (5235): 397–403. Bibcode:1995Sci...270..397F. doi:10.1126/science.270.5235.397. PMID   7569993. S2CID   29825758.
  218. Minion FC, et al. (2004). "The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis". J Bacteriol. 186 (21): 7123–33. doi:10.1128/JB.186.21.7123-7133.2004. PMC   523201 . PMID   15489423.
  219. 1 2 3 Vasconcelos AT, et al. (2005). "Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae". J Bacteriol. 187 (16): 5568–77. doi:10.1128/JB.187.16.5568-5577.2005. PMC   1196056 . PMID   16077101.
  220. Jaffe JD, et al. (2004). "The complete genome and proteome of Mycoplasma mobile". Genome Res. 14 (8): 1447–61. doi:10.1101/gr.2674004. PMC   509254 . PMID   15289470.
  221. Westberg J, et al. (2004). "The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP)". Genome Res. 14 (2): 221–7. doi:10.1101/gr.1673304. PMC   327097 . PMID   14762060.
  222. Sasaki Y, et al. (2002). "The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans". Nucleic Acids Res. 30 (23): 5293–300. doi:10.1093/nar/gkf667. PMC   137978 . PMID   12466555.
  223. Himmelreich R, et al. (1996). "Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae". Nucleic Acids Res. 24 (22): 4420–49. doi:10.1093/nar/24.22.4420. PMC   146264 . PMID   8948633.
  224. Chambaud I, et al. (2001). "The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis". Nucleic Acids Res. 29 (10): 2145–53. doi:10.1093/nar/29.10.2145. PMC   55444 . PMID   11353084.
  225. Oshima K, et al. (2004). "Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma". Nat Genet. 36 (1): 27–9. doi: 10.1038/ng1277 . PMID   14661021.
  226. Glass JI, et al. (2000). "The complete sequence of the mucosal pathogen Ureaplasma urealyticum". Nature. 407 (6805): 757–62. Bibcode:2000Natur.407..757G. doi:10.1038/35037619. PMID   11048724. S2CID   205009765.
  227. Anderson, I; et al. (2012). "Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T))". Stand. Genomic Sci. 6 (2): 155–64. doi:10.4056/sigs.2665915. PMC   3387792 . PMID   22768359.
  228. Elkins, J.G; et al. (2013). "Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T". Genome Announc. 1 (2): e00162–13. doi:10.1128/genomeA.00162-13. PMC   3624685 . PMID   23580711.
  229. 1 2 3 4 Zhaxybayevaa, O.; et al. (2009). "On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales". PNAS. 106 (14): 5865–5870. Bibcode:2009PNAS..106.5865Z. doi: 10.1073/pnas.0901260106 . PMC   2667022 . PMID   19307556.
  230. Swithers, K.S.; et al. (2011). "Genome Sequence of Kosmotoga olearia Strain TBF 19.5.1, a Thermophilic Bacterium with a Wide Growth Temperature Range, Isolated from the Troll B Oil Platform in the North Sea". J. Bacteriol. 193 (19): 5566–5567. doi:10.1128/JB.05828-11. PMC   3187421 . PMID   21914881.{{cite journal}}: CS1 maint: numeric names: authors list (link)
  231. Zhaxybayeva, O.; et al. (2012). "Genome Sequence of the Mesophilic Thermotogales Bacterium Mesotoga prima MesG1.Ag.4.2 Reveals the Largest Thermotogales Genome To Date". Genome Biol Evol. 4 (8): 700–708. doi:10.1093/gbe/evs059. PMC   3516359 . PMID   22798451.
  232. Nesbø, C.L.; et al. (2009). "The Genome of Thermosipho africanus TCF52B: Lateral Genetic Connections to the Firmicutes and Archaea". J. Bacteriol. 191 (6): 1974–1978. doi:10.1128/JB.01448-08. PMC   2648366 . PMID   19124572.
  233. Nelson KE, et al. (1999). "Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima". Nature. 399 (6734): 323–9. Bibcode:1999Natur.399..323N. doi:10.1038/20601. PMID   10360571. S2CID   4420157.
  234. Latif, Haythem; et al. (2013). "The Genome Organization of Thermotoga maritima Reflects Its Lifestyle". PLOS Genetics. 9 (4): e1003485. doi: 10.1371/journal.pgen.1003485 . PMC   3636130 . PMID   23637642.