Campylobacterota

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Campylobacterota
ARS Campylobacter jejuni.jpg
Campylobacter
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Campylobacterota
Waite et al. 2021 [1]
Classes
Synonyms
  • "Campylobacterota" Waite et al. 2018
  • "Epsilonbacteraeota" (sic) Waite et al. 2017 [2]

Campylobacterota are a phylum of Gram-negative bacteria. [3] Until the 2021 revision of bacterial taxonomy by the ICSP, [4] the entire phylum was classified within the Proteobacteria (synonym Pseudomonadota) as the Epsilonproteobacteria and the Desulfurellales. [5] The separation of this phylum from "Proteobacteria" was originally proposed in 2017, using GTDB-based methods. [2]

Contents

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [6] and National Center for Biotechnology Information (NCBI) [7]

16S rRNA based LTP_08_2023 [8] [9] [10] 120 single copy marker proteins based GTDB 08-RS214 [11] [12] [13]
Campylobacteria

Nitratiruptoraceae

Campylobacterales

Hydrogenimonadaceae

Helicobacteraceae

Sulfurovaceae

Sulfurimonadaceae

Arcobacteraceae

Sulfurospirillaceae

Sulfurospirillum alkalitolerans

Campylobacteraceae

Desulfurellia
Desulfurellales

Desulfurellaceae Kuever, Rainey & Widdel 2006

Hippeaceae Waite et al. 2020

Campylobacteria
Nautiliales

Nautiliaceae Miroshnichenko et al. 2004

Campylobacterales

Helicobacteraceae Garrity et al. 2006

Arcobacteraceae Waite et al. 2020

Sulfurospirillaceae Waite et al. 2020

Campylobacteraceae Vandamme & De Ley 1991

Thiovulaceae Waite et al. 2020

Sulfurimonadaceae Waite et al. 2020

Nitratiruptoraceae Waite et al. 2020

Hydrogenimonadaceae Waite et al. 2020

Sulfurovaceae Waite et al. 2020

See also

Related Research Articles

The Aquificota phylum is a diverse collection of bacteria that live in harsh environmental settings. The name Aquificota was given to this phylum based on an early genus identified within this group, Aquifex, which is able to produce water by oxidizing hydrogen. They have been found in springs, pools, and oceans. They are autotrophs, and are the primary carbon fixers in their environments. These bacteria are Gram-negative, non-spore-forming rods. They are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea.

<span class="mw-page-title-main">Campylobacterales</span> Order of bacteria

The Campylobacterales are an order of Campylobacterota which make up the epsilon subdivision, together with the small family Nautiliaceae. They are Gram-negative. Most of the species are microaerophilic.

The Geobacteraceae are a family within the Thermodesulfobacteriota.

<span class="mw-page-title-main">Desulfovibrionales</span> Order of bacteria

Desulfovibrionales are a taxonomic order of bacteria belonging to the phylum Thermodesulfobacteriota, with four families. They are Gram-negative. The majority are sulfate-reducing, with the exception of Lawsonia and Bilophila. All members of this order are obligately anaerobic. Most species are mesophilic, but some are moderate thermophiles.

The Desulfuromonadales are an order within the Thermodesulfobacteriota. Various members of the Desulfomonadales are capable of anaerobic respiration utilizing a variety of compounds as electron acceptors, including sulfur, Mn(IV), Fe(III), nitrate, Co(III), Tc(VII), U(VI) and trichloroacetic acid

The Syntrophobacterales are an order of Thermodesulfobacteriota. All genera are strictly anaerobic. Many of the family Syntrophobacteraceae are sulfate-reducing. Some species are motile by using one polar flagellum.

The Syntrophobacteraceae are a family of Thermodesulfobacteriota.

<span class="mw-page-title-main">Desulfovibrionaceae</span> Family of bacteria

Desulfovibrionaceae is a family of bacteria belonging to the phylum Thermodesulfobacteriota.

Desulfohalobiaceae is a family of bacteria belonging to the phylum Thermodesulfobacteriota.

<span class="mw-page-title-main">Spirochaetales</span> Order of bacteria

The Spirochaetales are an order of spirochete bacteria. Some species within this order are known to causes syphilis, Lyme disease, relapsing fever, and other illnesses.

The Myxococcota are a phylum of bacteria known as the fruiting gliding bacteria. All species of this group are Gram-negative. They are predominantly aerobic genera that release myxospores in unfavorable environments.

The phylum Elusimicrobiota, previously known as "Termite Group 1", has been shown to be widespread in different ecosystems like marine environment, sewage sludge, contaminated sites and soils, and toxic wastes. The high abundance of Elusimicrobiota representatives is only seen for the lineage of symbionts found in termites and ants.

Sulfurovum is a genus within the Campylobacterota which was first described in 2004 with the isolation and description of the type species Sulfurovum lithotrophicum from Okinawa trough hydrothermal sediments. Named for their ability to oxidize sulfur and their egg-like shape, cells are gram-negative, coccoid to short rods. Mesophilic chemolithoautotrophic growth occurs by oxidation of sulfur compounds coupled to the reduction of nitrate or molecular oxygen.

The Nautiliaceae are a family of bacteria placed in an order to itself, Nautiliales. The members of the family are all thermophilic.

<span class="mw-page-title-main">Micrococcales</span> Family of bacteria

The Micrococcales are an order of bacteria in the phylum Actinomycetota.

The Rhodothermales are an order of bacteria.

Bdellovibrionota is a phylum of bacteria.

The Geopsychrobacteraceae are a family within the Thermodesulfobacteriota.

The Desulfocapsaceae are a family of Thermodesulfobacteriota.

References

  1. Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi: 10.1099/ijsem.0.005056 . PMID   34694987. S2CID   239887308.
  2. 1 2 Waite, David W.; Vanwonterghem, Inka; Rinke, Christian; Parks, Donovan H.; Zhang, Ying; Takai, Ken; Sievert, Stefan M.; Simon, Jörg; Campbell, Barbara J.; Hanson, Thomas E.; Woyke, Tanja; Klotz, Martin G.; Hugenholtz, Philip (2017). "Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)". Frontiers in Microbiology. 8: 682. doi: 10.3389/fmicb.2017.00682 . ISSN   1664-302X. PMC   5401914 . PMID   28484436.
  3. "www.ncbi.nlm.nih.gov" . Retrieved 2009-03-19.
  4. Robitzski, Dan. "Newly Renamed Prokaryote Phyla Cause Uproar". The Scientist. LabX Media Group. Retrieved 17 February 2024.
  5. Berman, Jules (2019). Taxonomic Guide to Infectious Diseases (2 ed.). Elsevier. pp. 39–119. Retrieved 17 February 2024.
  6. A.C. Parte; et al. "Campylobacterota". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-09-09.
  7. Sayers; et al. "Campylobacterota". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-09-09.
  8. "The LTP" . Retrieved 20 November 2023.
  9. "LTP_all tree in newick format" . Retrieved 20 November 2023.
  10. "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  11. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  12. "bac120_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  13. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.