Bacilli

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Bacilli
Bacillus subtilis Gram.jpg
Bacillus subtilis , Gram stain
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Bacillota
Class: Bacilli
Ludwig et al. 2010
Orders
Synonyms
  • "Bacillia" Oren, Parte & Garrity 2016
  • Desulfuribacillia Sorokin et al. 2021
  • Firmibacteria Murray 1988
  • Teichobacteria Cavalier-Smith 2002

Bacilli is a taxonomic class of bacteria that includes two orders, Bacillales and Lactobacillales, which contain several well-known pathogens such as Bacillus anthracis (the cause of anthrax). Bacilli are almost exclusively gram-positive bacteria. [1]

Contents

The name Bacillus , capitalized and italicized, refers to a specific genus of bacteria. The name Bacilli, capitalized but not italicized, can also refer to a less specific taxonomic group of bacteria that includes two orders, one of which contains the genus Bacillus. When the word is formatted with lowercase and not italicized, 'bacillus', it will most likely be referring to shape and not to the genus at all.

Ambiguity

Several related concepts make use of similar words, and the ambiguity can create considerable confusion. The term " Bacillus " (capitalized and italicized) is also the name of a genus (Bacillus anthracis) that, among many other genera, falls within the class Bacilli.

The word "bacillus" (or its plural "bacilli", with a small b) is also a generic term to describe the morphology of any rod-shaped bacterium. This general term does not mean that the subject is a member of class Bacilli or genus Bacillus. Thus, it does not necessarily imply a similar group of characteristics. Not all members of class Bacilli are rod-shaped ( Staphylococcus is spherical), and many other rod-shaped bacteria that do not fall within that class exist (e.g., Clostridium is rod-shaped but very different taxonomically). Moreover, the general term "bacillus" does not necessarily indicate the Gram-positive staining common to class Bacilli. For example, E. coli is a rod-shaped bacterium that can be described as "a bacillus", but it stains Gram-negative and does not belong to the genus Bacillus or the class Bacilli. Some microbiologists have forsaken the general "bacillus" term because of the confusion it can create.

Phylogeny

The currently accepted taxonomy based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [2] and the National Center for Biotechnology Information (NCBI). [3]

120 marker proteins based GTDB 08-RS214 [4] [5] [6]
"Bacillia"
"Pasteuriales"

Pasteuriaceae

"Kyrpidiales"

"Kyrpidiaceae"

"Tumebacillales"

"Effusibacillaceae"

"Tumebacillaceae"

"Alicyclobacillales"

"Acidibacillaceae"

Alicyclobacillaceae

"Desulfuribacillales"

"Desulfuribacillaceae"

"Calditerricolales"

"Calditerricolaceae"

"Bacillus thermozeamaize" {Bacillales_F: Bacillaceae_M}

"Thermicanales"

"Thermicanaceae"

"Brockiales"

"Brockiaceae"

"Thermoactinomycetales"

Novibacillaceae

"Polycladomycesaceae"

"Planifilaceae"

Mechercharimyces {JANTPT01}

"Desmosporaceae"

Thermoactinomycetaceae

DSM22679

Microaerobacter {DSM-22679}

"Tepidibacillales"

"Tepidibacillaceae"

"Paenibacillales"

"Reconcilibacillaceae"

"Xylanibacillaceae"

SCSIO-06110

Paenibacillus species-group 13 {YIM-B00363}

"Gorillibacteriaceae"

Paenibacillus swuensis {DY6}

"Paenibacillaceae"

"Aneurinibacillales"

"Ammoniphilaceae"

"Aneurinibacillaceae"

"Brevibacillales"

"Brevibacillaceae"

"Rubeoparvulales"

"Rubeoparvulaceae"

"Caldalkalibacillales"

Bacillus species-group 4 {JCM-10596}

"Caldalkalibacillaceae"

Bacillales_K

Sporolactobacillaceae

"Bacillidae"
Bacillales E

"Lottiidibacillaceae"

"Massilibacteriaceae"

Bacillales G

"Maribacillaceae"

Pseudalkalibacillus species-group 2 {HB172195}

"Fictibacillaceae"

Bacillales H

"Anaerobacillaceae"

Desertibacillus {KJ1-10-99}

Alkalihalobacterium {Bacillaceae_F}

Bacillaceae_D

"Salisediminibacteriaceae"

"Marinococcaceae"

Bacillales I

Bacillus solimangrovi {Bacillaceae_N}

Bacillus marinisedimentorum {Bacillaceae_O}

Bacillales D

"Aureibacillaceae"

"Alkalibacillaceae"

Pontibacillus {BH030062}

"Halobacillaceae"

"Amphibacillaceae"

Bacillales

Bacillaceae_J

Bacillus species-group 3 {SA4}

Bacillaceae_G

Sutcliffiella {Bacillaceae_I}

Priestia {Bacillaceae_H}

"Aeribacillaceae"

Bacillaceae s.s.

Bacillaceae_L

"Anoxybacillaceae"

DSM-1321

"Nialliaceae"

Bacillus smithii {JACDOC01}

"Falsibacillaceae"

Bacillaceae_C

"Domibacillaceae"

Bacillus coahuilensis {Bacillaceae_K}

Mangrovibacillus

"Jeotgalibacillaceae"

Bacillaceae_B

Bacillus oleivorans {JC228}

"Caldibacillaceae"

Planococcaceae

s.s.
"Harrysmithimonadales"

"Harrysmithimonadaceae"

"Exiguobacteriales"

"Exiguobacteriaceae"

"Staphylococcales"

"Gemellaceae"

"Abyssicoccaceae"

"Salinicoccaceae"

Staphylococcaceae

"Erysipelotrichidae"
Culicoidibacterales

Culicoidibacteraceae

Haloplasmatales

Turicibacteraceae

Haloplasmataceae

"Bathyoplasmales"

"Bathyoplasmaceae"

"Izemoplasmatales"

"Izemoplasmataceae"

Acholeplasmatales

Anaeroplasmataceae

UBA5453

Acholeplasmataceae

"Aphodocolales"

"Aphodocolaceae"

RFN20

"Caccosomataceae"

"Enterosomataceae"

"Enteromonadaceae"

Erysipelotrichales

Coprobacillaceae

Erysipelotrichaceae

Mycoplasmatales

"Ca. Spiroplasma holothuricola" {MT37}

Mycoplasmoidaceae

"Hepatoplasmataceae"

Metamycoplasmataceae

Spiroplasma species-group 3 {VBWQ01}

Mycoplasmataceae

Lactobacillales

Listeriaceae

Carnobacteriaceae

Aerococcaceae

"Vagococcaceae"

Enterococcaceae

"Catellicoccaceae"

Streptococcaceae

Lactobacillaceae

See also

Related Research Articles

<span class="mw-page-title-main">Bacillota</span> Phylum of bacteria

The Bacillota are a phylum of bacteria, most of which have gram-positive cell wall structure. The renaming of phyla such as Firmicutes in 2021 remains controversial among microbiologists, many of whom continue to use the earlier names of long standing in the literature.

The Thermomicrobia is a group of thermophilic green non-sulfur bacteria. Based on species Thermomicrobium roseum and Sphaerobacter thermophilus, this bacteria class has the following description:

<span class="mw-page-title-main">Clostridia</span> Class of bacteria

The Clostridia are a highly polyphyletic class of Bacillota, including Clostridium and other similar genera. They are distinguished from the Bacilli by lacking aerobic respiration. They are obligate anaerobes and oxygen is toxic to them. Species of the class Clostridia are often but not always Gram-positive and have the ability to form spores. Studies show they are not a monophyletic group, and their relationships are not entirely certain. Currently, most are placed in a single order called Clostridiales, but this is not a natural group and is likely to be redefined in the future.

Anaeroplasmatales is an order of mollicute bacteria which are generally found in the rumens of cattle and sheep. The only family in the order is the family Anaeroplasmataceae.

<span class="mw-page-title-main">Bacillaceae</span> Family of bacteria

The Bacillaceae are a family of gram-positive, heterotrophic, rod-shaped bacteria that may produce endospores. Motile members of this family are characterized by peritrichous flagella. Some Bacillaceae are aerobic, while others are facultative or strict anaerobes. Most are not pathogenic, but Bacillus species are known to cause disease in humans.

The Myxococcota are a phylum of bacteria known as the fruiting gliding bacteria. All species of this group are Gram-negative. They are predominantly aerobic genera that release myxospores in unfavorable environments.

<span class="mw-page-title-main">Bacillus (shape)</span> Any rod-shaped bacterium or archaeon

A bacillus, also called a bacilliform bacterium or often just a rod, is a rod-shaped bacterium or archaeon. Bacilli are found in many different taxonomic groups of bacteria. However, the name Bacillus, capitalized and italicized, refers to a specific genus of bacteria. The name Bacilli, capitalized but not italicized, can also refer to a less specific taxonomic group of bacteria that includes two orders, one of which contains the genus Bacillus. When the word is formatted with lowercase and not italicized, 'bacillus', it will most likely be referring to shape and not to the genus at all. Bacilliform bacteria are also often simply called rods when the bacteriologic context is clear.

<span class="mw-page-title-main">Bacterial cellular morphologies</span>

Bacterial cellular morphologies are morphologies that are characteristic of various types bacteria and often a key factor in identifying bacteria species. Their direct examination under the light microscope enables the classification of these bacteria and archaea.

Bacterial taxonomy is subfield of taxonomy devoted to the classification of bacteria specimens into taxonomic ranks.

Akkermansia is a genus in the phylum Verrucomicrobiota (Bacteria). The genus was first proposed by Derrien et al. (2004), with the type species Akkermansia muciniphila.

<i>Carboxydocella</i> Genus of bacteria

Carboxydocella is a Gram-positive and obligate anaerobe bacterial genus from the family of Syntrophomonadaceae.

Laceyella is a Gram-positive, thermophilic, spore-forming and aerobic bacterial genus from the family of Thermoactinomycetaceae. The genus Laceyella is namened after the English microbiologist John Lacey.

Bulleidia is a Gram-positive, non-spore-forming, anaerobic and non-motile genus from the family of Erysipelotrichidae, with one known species.

<span class="mw-page-title-main">Haloferacaceae</span> Family of bacteria

Haloferacaceae is a family of halophilic, chemoorganotrophic or heterotrophic archaea within the order Haloferacales. The type genus of this family is Haloferax. Its biochemical characteristics are the same as the order Haloferacales.

Desulfonatronovibrio is a Gram-negative, vibrios, anaerobic and motile genus of bacteria from the family of Desulfohalobiaceae with a single polar flagellum.

Heliorestis is an alkaliphilic genus of bacteria from the family of Heliobacteriaceae.

Tumebacillus is a genus of Gram-positive, rod-shaped, spore-forming bacteria. Members of the genus can be motile or non-motile, and form white or yellow colonies on R2A agar.

Effusibacillus is a genus of Gram-positive, rod-shaped, aerobic, spore-forming bacteria.

Halanaerobium is a gram-negative, non-endospore-forming, rod-shaped, and strictly anaerobic genus of bacteria from the family Halanaerobiaceae.

Natrialbales is an order of halophilic, chemoorganotrophic archaea within the class Haloarchaea. The type genus of this order is Natrialba.

References

  1. Ludwig, Wolfgang; Schleifer, Karl-Heinz; Whitman, William B. (2015). "Bacilli class. Nov". Bergey's Manual of Systematics of Archaea and Bacteria. p. 1. doi:10.1002/9781118960608.cbm00033. ISBN   9781118960608.
  2. J.P. Euzéby. "Bacilli". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2018-07-20.
  3. Sayers; et al. "Bacilli". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2018-07-20.
  4. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  5. "bac120_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  6. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.