Actinomycetia

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Actinomycetia
Actinomyces israelii.jpg
Scanning electron micrograph of Actinomyces israelii .
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Actinomycetota
Class: Actinomycetia
(Stackebrandt et al. 1997) Salam et al. 2020 [1]
Type genus
Actinomyces
Harz 1877 (Approved Lists 1980)
Orders

See text

Synonyms
  • Actinobacteria Stackebrandt et al. 1997
  • Actinomycetes Krassilnikov 1949 (Approved Lists 1980)
  • Arabobacteria Cavalier-Smith 2002
  • Arthrobacteria Cavalier-Smith 2002
  • Mycobacteria Pribram 1929
  • Streptomycetes Cavalier-Smith 2002

The Actinomycetia are a class of bacteria. [2]

Taxonomy

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [3] and National Center for Biotechnology Information (NCBI). [4]

Contents

Phylogeny

Whole-genome based phylogeny [5] 16S rRNA based LTP_12_2021 [6] [7] [8] GTDB 07-RS207 by Genome Taxonomy Database [9] [10] [11]

Nitriliruptoria

Actinomycetia

Acidothermales

Sporichthyales

Catenulisporales

Streptomycetales

Streptosporangiales

Jiangellales

Propionibacteriales

Frankiales

Cryptosporangiales

Glycomycetales

Micromonosporales

Jatrophihabitantales

Geodermatophilales

Nakamurellales

Mycobacteriales

Actinopolysporales

Pseudonocardiales

Bifidobacteriales

Actinomycetales

Kineosporiales

Micrococcales

Acidimicrobiia

Acidimicrobiales

Nitriliruptoria

Egicoccales

Nitriliruptorales

Egibacterales

Euzebyales

Actinomycetia

Carbonactinosporaceae

Acidothermales

Jatrophihabitantales

Frankiales

Geodermatophilales

Cryptosporangiales

Sporichthyales

Nakamurellales

Kineosporiales

Actinomycetales

Catenulisporales

Motilibacterales

Streptomycetales

Streptosporangiales

Propionibacteriales

Jiangellales

Glycomycetales

Micromonosporales

Mycobacteriales

Pseudonocardiales

Actinomycetia
Nitriliruptoridae

Euzebyales (incl. Egibacterales)

Nitriliruptorales (incl. Egicoccales)

Actinobacteridae
Actinomycetales

"Polyseptineae" (incl. Aquipuribacterales; Dermatophilales)

Kineosporineae (incl. Kineosporiales)

Actinomycetineae (incl. Beutenbergiales; Bifidobacteriales; Bogoriellales; Cellulomonadales; Demequinales; Dermabacterales; Ruaniales)

Micrococcineae (incl. Brevibacteriales; Microbacteriales; Micrococcales)

"Nanopelagicales"

Jiangellales

Propionibacteriales

Acidothermales

Streptosporangiales

Mycobacteriales

Frankineae (incl. Frankiales)

Micromonosporineae (incl. Actinocatenisporales; Actinoplanales; Cryptosporangiales; Glycomycetales; Micromonosporales; Phytomonosporales)

Corynebacterineae (incl. Actinopolysporales; Antricoccales; Corynebacteriales; Geodermatophilales; Jatrophihabitantales; Nakamurellales; Pseudonocardiales)

Sporichthyales

Motilibacterales

Streptomycetales (incl. Carbonactinosporaceae; Catenulisporales)

See also

Related Research Articles

<span class="mw-page-title-main">Actinomycetota</span> Phylum of bacteria

The Actinomycetota are a phylum of all gram-positive bacteria. They can be terrestrial or aquatic. They are of great economic importance to humans because agriculture and forests depend on their contributions to soil systems. In soil they help to decompose the organic matter of dead organisms so the molecules can be taken up anew by plants. While this role is also played by fungi, Actinomycetota are much smaller and likely do not occupy the same ecological niche. In this role the colonies often grow extensive mycelia, like a fungus would, and the name of an important order of the phylum, Actinomycetales, reflects that they were long believed to be fungi. Some soil actinomycetota live symbiotically with the plants whose roots pervade the soil, fixing nitrogen for the plants in exchange for access to some of the plant's saccharides. Other species, such as many members of the genus Mycobacterium, are important pathogens.

The family Micrococcaceae includes bacterial genera of Gram positive cocci that inhabit the air and skin, such as Micrococcus luteus.

<span class="mw-page-title-main">Acidimicrobiaceae</span> Family of bacteria

The Acidimicrobiaceae are a family of Actinomycetota.

<span class="mw-page-title-main">Bifidobacteriaceae</span> Family of bacteria

The Bifidobacteriaceae are the only family of bacteria in the order Bifidobacteriales. According to the 16S rRNA-based LTP release 106 published by 'The All-Species Living Tree' Project, the order Bifidobacteriales is a clade nested within the suborder Micrococcineae, also the genus Bifidobacterium is paraphyletic to the other genera within the family, i.e. the other genera are nested within Bifidobacterium.

The Coriobacteriales are an order of Actinomycetota.

Rubrobacter is a genus of Actinomycetota. It is radiotolerant and may rival Deinococcus radiodurans in this regard.

The Halanaerobiales are an order of bacteria placed within the class Clostridia, and encompassing two families, the Halanaerobiaceae and the Halobacteroidaceae. Originally placed within the highly polyphyletic class Clostridia, according to the NCBI and LPSN, it is now thought to lie outside the Bacillota. Halanaerobiales are halophilic obligate anaerobes with a fermentative or homoacetogenic metabolism.

<span class="mw-page-title-main">Pseudonocardiaceae</span> Family of bacteria

The Pseudonocardiaceae are a family of bacteria in the order Actinomycetales and the only member of the suborder Pseudonocardineae.

<span class="mw-page-title-main">Glycomycetaceae</span> Family of bacteria

The Glycomycetaceae are a family of bacteria.

The Cryptosporangiaceae are the only family of the order Cryptosporangiales, which is a part of the phylum Actinomycetota.

Promicromonosporaceae is an Actinomycete family.

Dermabacteraceae is an Actinomycetota family.

Rubrobacteria is a class of Actinomycetota.

The Thermoleophilia are a class of Actinomycetota.

<span class="mw-page-title-main">Acidimicrobiia</span> Class of bacteria

The Acidimicrobiia are a class of Actinomycetota, in which three families, eight genera, and nine species have been described, Acidimicrobium ferrooxidans is the type species of the order.

The Coprobacillaceae are a family of Bacillota.

Orenia is a genus of bacteria from the family of Halobacteroidaceae. Orenia bacteria occurs in saline environments.

The Sporichthyaceae are the only family of the order Sporichthyales, which is a part of the phylum Actinomycetota.

Planctomycetaceae is a family of bacteria.

References

  1. "Actinomycetia". National Center for Biotechnology Information (NCBI). Retrieved 13 June 2021.
  2. Stackebrandt E, Rainey FA, Ward-Rainey NL (1997). "Proposal for a new hierarchic classification system, Actinobacteria classis nov". Int. J. Syst. Bacteriol. 47 (2): 479–491. doi: 10.1099/00207713-47-2-479 .
  3. Euzéby JP, Parte AC. "Actinobacteria". List of Prokaryotic names with Standing in Nomenclature(LPSN). Retrieved June 7, 2021.
  4. Sayers; et al. "Actinomycetia". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
  5. Nouioui I, Carro L, García-López M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Markus Göker M (2018). "Genome-Based Taxonomic Classification of the Phylum Actinobacteria". Front. Microbiol. 9: 2007. doi: 10.3389/fmicb.2018.02007 . PMC   6113628 . PMID   30186281.
  6. "The LTP" . Retrieved 23 February 2021.
  7. "LTP_all tree in newick format" . Retrieved 23 February 2021.
  8. "LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
  9. "GTDB release 07-RS207". Genome Taxonomy Database . Retrieved 20 June 2022.
  10. "ar53_r207.sp_label". Genome Taxonomy Database . Retrieved 20 June 2022.
  11. "Taxon History". Genome Taxonomy Database . Retrieved 20 June 2022.