Holophagae

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Holophagae
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Acidobacteriota
Class: Holophagae
Fukunaga et al. 2008 [1]
Type genus
Holophaga
Liesack et al. 1995
Orders [2]
Synonyms
  • "Holophagia" Oren, Parte & Garrity 2016

Holophagae is a class of Acidobacteriota. [1]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature. [2] Numbered orders do not yet have any cultured representatives.

Contents

16S rRNA based phylogeny [3] 16S rRNA based LTP_08_2023 [4] [5] [6] 120 marker proteins based GTDB 08-RS214 [7] [8] [9]

Order 6-4

Order 6-3

Order 6-2

Thermotomaculales

Acanthopleuribacterales

Holophagales

Acanthopleuribacterales

Acanthopleuribacteraceae

Holophagales

Holophagaceae

Thermotomaculales

Thermotomaculaceae

Acanthopleuribacterales

Acanthopleuribacteraceae

Holophagales

Holophagaceae

See also

Related Research Articles

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<span class="mw-page-title-main">Acidobacteriota</span> Phylum of bacteria

Acidobacteriota is a phylum of Gram-negative bacteria. Its members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture.

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<span class="mw-page-title-main">Acidobacteriaceae</span> Family of bacteria

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The Coriobacteriia are a class of Gram-positive bacteria within the Actinomycetota phylum. Species within this group are nonsporulating, strict or facultative anaerobes that are capable of thriving in a diverse set of ecological niches. Gordonibacter species are the only members capable of motility by means of flagella within the class. Several species within the Coriobacteriia class have been implicated with human diseases that range in severity. Atopobium, Olsenella, and Cryptobacterium species have responsible for human oral infections including periodontitis, halitosis, and other endodontic infections. Eggerthella species have been associated with severe blood bacteraemia and ulcerative colitis.

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<span class="mw-page-title-main">Acidobacteriia</span> Class of bacteria

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The Bryobacteraceae are a family of Acidobacteriota.

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References

  1. 1 2 Fukunaga Y, Kurahashi M, Yanagi K, Yokota A, Harayama S. (2008). "Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum "Acidobacteria"". Int J Syst Evol Microbiol. 58 (Pt 11): 2597–2601. doi: 10.1099/ijs.0.65589-0 . PMID   18984699.
  2. 1 2 Euzéby JP, Parte AC. "Holophagae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved May 8, 2022.
  3. Dedysh SN, Yilmaz P. (2018). "Refining the taxonomic structure of the phylum Acidobacteria". Int J Syst Evol Microbiol. 68 (12): 3796–3806. doi: 10.1099/ijsem.0.003062 . PMID   30325293. S2CID   53502177.
  4. "The LTP" . Retrieved 20 November 2023.
  5. "LTP_all tree in newick format" . Retrieved 20 November 2023.
  6. "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  7. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  8. "bac120_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  9. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.