Holophagae

Holophagae
Scientific classification
Domain:	Bacteria
Kingdom:	Pseudomonadati
Phylum:	Acidobacteriota
Class:	Holophagae Fukunaga et al. 2008 [1]
Type genus
Holophaga Liesack et al. 1995
Orders [2]
Acanthopleuribacterales Holophagales Thermotomaculales
Synonyms
"Holophagia" Oren, Parte & Garrity 2016

Holophagae is a class of Acidobacteriota. ^[1]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature ^[2] and National Center for Biotechnology Information (NCBI). ^[3] Numbered orders do not yet have any cultured representatives.

16S rRNA based phylogeny [4]	16S rRNA based LTP_10_2024 [5] [6] [7]	120 marker proteins based GTDB 10-RS226 [8] [9] [10]
Order 6-4 Order 6-3 Order 6-2 Thermotomaculales Acanthopleuribacterales Holophagales	Holophagales Holophagaceae Thermotomaculales Thermotomaculaceae Acanthopleuribacterales Acanthopleuribacteraceae	Thermotomaculales Thermotomaculaceae Acanthopleuribacterales Acanthopleuribacteraceae Holophagales Holophagaceae

See also

• List of bacterial orders
• List of bacteria genera

References

1. Fukunaga Y, Kurahashi M, Yanagi K, Yokota A, Harayama S. (2008). "Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum "Acidobacteria"". Int J Syst Evol Microbiol. 58 (Pt 11): 2597–2601. doi: 10.1099/ijs.0.65589-0 . PMID   18984699.
2. Holophagae in LPSN ; Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (29 October 2025). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity". Nucleic Acids Research. 53: D1 –D12. doi:10.1093/nar/gkaf1110.
3. Schoch CL; et al. "Holophagae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-06-05.
4. Dedysh SN, Yilmaz P. (2018). "Refining the taxonomic structure of the phylum Acidobacteria". Int J Syst Evol Microbiol. 68 (12): 3796–3806. doi: 10.1099/ijsem.0.003062 . PMID   30325293. S2CID   53502177.
5. "The LTP" . Retrieved 10 December 2024.
6. "LTP_all tree in newick format" . Retrieved 10 December 2024.
7. "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
8. "GTDB release 10-RS226". Genome Taxonomy Database . Retrieved 1 May 2025.
9. "bac120_r226.sp_label". Genome Taxonomy Database . Retrieved 1 May 2025.
10. "Taxon History". Genome Taxonomy Database . Retrieved 1 May 2025.