Holophagaceae

Holophagaceae
Scientific classification
Domain:	Bacteria
Kingdom:	Pseudomonadati
Phylum:	Acidobacteriota
Class:	Holophagae
Order:	Holophagales Fukunaga et al. 2008 [1]
Family:	Holophagaceae Fukunaga et al. 2008 [1]
Genera
" Acidiparvus " Geothrix Holophaga Mesoterricola "Ca. Porrumbacterium"

The class Holophagaceae is a family of strictly anaerobic Gram negative marine bacteria in the phylum Acidobacteriota . ^{[1] [2]}

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LSPN) ^[3] and National Center for Biotechnology Information (NCBI). ^[4]

16S rRNA based LTP_10_2024 [5] [6] [7]	120 marker proteins based GTDB 10-RS226 [8] [9] [10]
Holophaga Mesoterricola Mesoterricola sediminisItoh et al. 2023 Geothrix	" Acidiparvus " Wong et al. 2024 Holophaga Liesack et al. 1995 Mesoterricola Itoh et al. 2023 Geothrix Coates et al. 1999

See also

• List of bacterial orders
• List of bacteria genera

References

1. Fukunaga Y, Kurahashi M, Yanagi K, Yokota A, Harayama S. (2008). "Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum "Acidobacteria"". International Journal of Systematic and Evolutionary Microbiology. 58 (11): 2597–2601. doi: 10.1099/ijs.0.65589-0 . PMID   18984699.
2. Fukunaga, Yukiyo; Ichikawa, Natsuko (2014). "The Class Holophagaceae". In Eugene Rosenberg; Edward F. DeLong; Stephen Lory; Erko Stackebrandt; Fabiano Thompson (eds.). The Prokaryotes – Other Major Lineages of Bacteria and The Archaea. pp. 683–687. doi:10.1007/978-3-642-38954-2_161. ISBN   978-3-642-38953-5.
3. Holophagaceae in LPSN ; Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (29 October 2025). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity". Nucleic Acids Research. 53: D1 –D12. doi:10.1093/nar/gkaf1110.
4. Schoch CL; et al. "Holophagaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-06-05.
5. "The LTP" . Retrieved 10 December 2024.
6. "LTP_all tree in newick format" . Retrieved 10 December 2024.
7. "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
8. "GTDB release 10-RS226". Genome Taxonomy Database . Retrieved 1 May 2025.
9. "bac120_r226.sp_label". Genome Taxonomy Database . Retrieved 1 May 2025.
10. "Taxon History". Genome Taxonomy Database . Retrieved 1 May 2025.