Coriobacteriia | |
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Scientific classification | |
Domain: | Bacteria |
Phylum: | Actinomycetota |
Class: | Coriobacteriia König 2013 [1] |
Orders [2] | |
Synonyms | |
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The Coriobacteriia are a class of Gram-positive bacteria within the Actinomycetota phylum. [3] [4] Species within this group are nonsporulating, strict or facultative anaerobes that are capable of thriving in a diverse set of ecological niches. [5] [6] [7] [8] Gordonibacter species are the only members capable of motility by means of flagella within the class. Several species within the Coriobacteriia class have been implicated with human diseases that range in severity. Atopobium , Olsenella , and Cryptobacterium species have responsible for human oral infections including periodontitis, halitosis, and other endodontic infections. [9] [10] Eggerthella species have been associated with severe blood bacteraemia and ulcerative colitis. [11]
Historically, all Coriobacteriia species were placed within a single order (Coriobacteriales) and a single family (Coriobacteriaceae). [3] [12] [13] [14] [15] This view, however, was not reflective of accurate evolutionary interrelationships within the class. The current taxonomic view is justified by the presence of several conserved signature indels (CSIs) that have been found at the different taxonomic ranks. [16] These CSIs are specific and represent synapomorphic characteristics that can be used to distinguish groups within the Coriobacteriia, both at the family and order levels. [17] The distinction of the orders within the Coriobacteriia is also supported phylogenetic tree branching and by consistent characteristics; members belonging to the Coriobacteriales are glucose-fermenting, saccharolytic species while the Eggerthellales order has species that are consistently unable to ferment glucose and are asaccharolytic. [3] [4] [16]
CSIs have also been used to resolve the phylogenetic position of the Coriobacteriia among all bacteria where they have been found exclusively for all species within the class, delineating them from other Actinomycetota. [16] The Coriobacteriia are an early branching lineage within the Actinomycetota phylum [4] [14] [15] The deep branching of the class has led to dispute over its membership within the phylum and whether or not it is a true Actinomycetota group. [12] [13] [14] A CSI in the form of a single amino acid insert in the enzyme deoxyuridine 59-triphosphate (dUTP) nucleotidohydrolase has been found that is shared by all Coriobacteriia members, as well as several Actinomycetota species, and absent from all other bacteria. [16] This CSI provides unambiguous support for Coriobacteriia's membership within the Actinomycetota. [16] [17]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [2] and National Center for Biotechnology Information (NCBI). [18]
16S rRNA based LTP_08_2023 [19] [20] [21] | 120 marker proteins based GTDB 08-RS214 [22] [23] [24] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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The Aquificota phylum is a diverse collection of bacteria that live in harsh environmental settings. The name Aquificota was given to this phylum based on an early genus identified within this group, Aquifex, which is able to produce water by oxidizing hydrogen. They have been found in springs, pools, and oceans. They are autotrophs, and are the primary carbon fixers in their environments. These bacteria are Gram-negative, non-spore-forming rods. They are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea.
The Chloroflexia are a class of bacteria in the phylum Chloroflexota. Chloroflexia are typically filamentous, and can move about through bacterial gliding. It is named after the order Chloroflexales.
The Thermotogota are a phylum of the domain Bacteria. The phylum Thermotogota is composed of Gram-negative staining, anaerobic, and mostly thermophilic and hyperthermophilic bacteria.
The Bifidobacteriaceae are the only family of bacteria in the order Bifidobacteriales. According to the 16S rRNA-based LTP release 106 published by 'The All-Species Living Tree' Project, the order Bifidobacteriales is a clade nested within the suborder Micrococcineae, also the genus Bifidobacterium is paraphyletic to the other genera within the family, i.e. the other genera are nested within Bifidobacterium.
The Coriobacteriales are an order of Actinomycetota.
Cryptobacterium is a genus of Actinomycetota, in the family Coriobacteriaceae. Up to now there is only one species of this genus known.
Rubrobacter is a genus of Actinomycetota. It is radiotolerant and may rival Deinococcus radiodurans in this regard.
Sphaerobacter is a genus of bacteria. When originally described it was placed in its own subclass (Spahaerobacteridae) within the class Actinomycetota. Subsequently, phylogenetic studies have now placed it in its own order Sphaerobacterales within the phylum Thermomicrobiota. Up to now there is only one species of this genus known. The closest related cultivated organism to S. Thermophilus is the Thermomicrobium Roseum and has an 87% sequence similarity which indicates that S. Thermophilus is one of the most isolated bacterial species.[4]
Streptomycetaceae is a family of Actinomycetota, making up the monotypic order Streptomycetales. It includes the important genus Streptomyces. This was the original source of many antibiotics, namely streptomycin, the first antibiotic against tuberculosis.
The Synergistota is a phylum of anaerobic bacteria that show Gram-negative staining and have rod/vibrioid cell shape. Although Synergistota have a diderm cell envelope, the genes for various proteins involved in lipopolysaccharides biosynthesis have not yet been detected in Synergistota, indicating that they may have an atypical outer cell envelope. The Synergistota inhabit a majority of anaerobic environments including animal gastrointestinal tracts, soil, oil wells, and wastewater treatment plants and they are also present in sites of human diseases such as cysts, abscesses, and areas of periodontal disease. Due to their presence at illness related sites, the Synergistota are suggested to be opportunistic pathogens but they can also be found in healthy individuals in the microbiome of the umbilicus and in normal vaginal flora. Species within this phylum have also been implicated in periodontal disease, gastrointestinal infections and soft tissue infections. Other species from this phylum have been identified as significant contributors in the degradation of sludge for production of biogas in anaerobic digesters and are potential candidates for use in renewable energy production through their production of hydrogen gas. All of the known Synergistota species and genera are presently part of a single class (Synergistia), order (Synergistiales), and family (Synergistaceae).
The Negativicutes are a class of bacteria in the phylum Bacillota, whose members have a peculiar cell wall with a lipopolysaccharide outer membrane which stains gram-negative, unlike most other members of the Bacillota. Although several neighbouring Clostridia species also stain gram-negative, the proteins responsible for the unusual diderm structure of the Negativicutes may have actually been laterally acquired from Pseudomonadota. Additional research is required to confirm the origin of the diderm cell envelope in the Negativicutes.
The Jiangellaceae are the only family of the order Jiangellales, which is a part of the phylum Actinomycetota.
The Cryptosporangiaceae are the only family of the order Cryptosporangiales, which is a part of the phylum Actinomycetota.
Intrasporangiaceae is an actinomycete family. The family is named after the type genus Intrasporangium. The type species of Intrasporangium was originally thought to form endospores; however, the mycelium of this strain may bear intercalary vesicles that were originally identified as spores. No members of Intrasporangiaceae are known to form spores.
Cryptobacterium curtum is a Gram-positive anaerobic rod bacteria isolated from human mouths.
The Micrococcales are an order of bacteria in the phylum Actinomycetota.
The Sporichthyaceae are the only family of the order Sporichthyales, which is a part of the phylum Actinomycetota.
Jatrophihabitans is a genus of Actinomycetota.
The Eggerthellaceae are a family of Gram-positive, rod- or coccus-shaped Actinomycetota. It is the sole family within the order Eggerthellales.
The Atopobiaceae are a family of Actinomycetota.