| Xanthomonadaceae | |
|---|---|
Scientific classification  | |
| Domain: | Bacteria |
| Phylum: | Pseudomonadota |
| Class: | Gammaproteobacteria |
| Order: | Xanthomonadales |
| Family: | Xanthomonadaceae Saddler and Bradbury 2005 |
| Genera | |
Arenimonas | |
Xanthomonadaceae is a family of Pseudomonadota within the Xanthomonadales order. It was previously known as Lysobacteraceae. [3]
The Xanthomonadales are a bacterial order within the Gammaproteobacteria. They are one of the largest groups of bacterial phytopathogens, harbouring species such as Xanthomonas citri, Xanthomonas euvesicatoria, Xanthomonas oryzae and Xylella fastidiosa. These bacteria affect agriculturally important plants including tomatoes, bananas, citrus plants, rice, and coffee. Many species within the order are also human pathogens. Species within the genus Stenotrophomonas are multidrug resistant opportunistic pathogens that are responsible for nosocomial infections in immunodeficient patients.
Halobacteriales are an order of the Halobacteria, found in water saturated or nearly saturated with salt. They are also called halophiles, though this name is also used for other organisms which live in somewhat less concentrated salt water. They are common in most environments where large amounts of salt, moisture, and organic material are available. Large blooms appear reddish, from the pigment bacteriorhodopsin. This pigment is used to absorb light, which provides energy to create ATP. Halobacteria also possess a second pigment, halorhodopsin, which pumps in chloride ions in response to photons, creating a voltage gradient and assisting in the production of energy from light. The process is unrelated to other forms of photosynthesis involving electron transport; however, and halobacteria are incapable of fixing carbon from carbon dioxide.
Pseudomonas flavescens is a Gram-negative bacterium that causes blight cankers on walnut trees. Based on 16S rRNA analysis, P. flavescens has been placed in the P. aeruginosa group.
Pseudomonas veronii is a Gram-negative, rod-shaped, fluorescent, motile bacterium isolated from natural springs in France. It may be used for bioremediation of contaminated soils, as it has been shown to degrade a variety of simple aromatic organic compounds. Based on 16S rRNA analysis, P. veronii has been placed in the P. fluorescens group.
Pseudomonas mosselii is a Gram-negative, rod-shaped, bacterium clinically isolated in France. Based on 16S rRNA analysis, P. mosselii has been placed in the P. putida group.
Pseudomonas plecoglossicida is a non-fluorescent, Gram-negative, rod-shaped, motile bacterium that causes hemorrhagic ascites in the ayu fish, from which it derives its name. Based on 16S rRNA analysis, P. plecoglossicida has been placed in the P. putida group.
Pseudomonas cedrina is a Gram-negative, rod-shaped bacterium isolated from spring waters in Lebanon. Based on 16S rRNA analysis, P. cedrina has been placed in the P. fluorescens group.
Pseudomonas orientalis is a Gram-negative, rod-shaped bacterium isolated from spring waters in Lebanon. Based on 16S rRNA analysis, P. orientalis has been placed in the P. fluorescens group.
Pseudomonas mandelii is a fluorescent, Gram-negative, rod-shaped bacterium isolated from natural spring waters in France. Based on 16S rRNA analysis, P. mandelii has been placed in the P. fluorescens group.
Pseudomonas migulae is a fluorescent, Gram-negative, rod-shaped bacterium isolated from natural mineral waters in France. This bacterium has also been isolated from endophytic tissues of lodgepole pine trees growing on gravel mining sites with potential to perform biological nitrogen fixation and plant growth promotion. Based on 16S rRNA analysis, P. migulae has been placed in the P. fluorescens group.
Pseudomonas gessardii is a fluorescent, Gram-negative, rod-shaped bacterium isolated from natural mineral waters in France. Based on 16S rRNA analysis, P. gessardii has been placed in the P. fluorescens group.
Sphingomonas abikonensis is a species of Gram-negative bacteria. Following 16S rRNA phylogenetic analysis, it was determined that the organism formerly classified as 'P.' abikonensis belonged in the Sphingomonas rRNA lineage. It is capable of forming freshwater biofilms.
The Negativicutes are a class of bacteria in the phylum Bacillota, whose members have a peculiar cell wall with a lipopolysaccharide outer membrane which stains gram-negative, unlike most other members of the Bacillota. Although several neighbouring Clostridia species also stain gram-negative, the proteins responsible for the unusual diderm structure of the Negativicutes may have actually been laterally acquired from Pseudomonadota. Additional research is required to confirm the origin of the diderm cell envelope in the Negativicutes.
Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. CSIs, brought about by rare genetic changes, provide useful phylogenetic markers that are generally of defined size and they are flanked on both sides by conserved regions to ensure their reliability. While indels can be arbitrary inserts or deletions, CSIs are defined as only those protein indels that are present within conserved regions of the protein.
Pseudoxanthomonas is a genus of Gram-negative bacteria in the family Xanthomonadaceae from the phylum Pseudomonadota. This genus is closely related phylogenetically with the genera Xanthomonas, Xylella, and Stenotrophomonas. The genus was first distinguished in 2000 in biofilter samples, and was later emended by Lee et al. Some of the species in this genus are: P. mexicana, P. japonensis, P. koreensis, P. daejeonensis, and the type species P. broegbernensis.
The Coriobacteriia are a class of Gram-positive bacteria within the Actinomycetota phylum. Species within this group are nonsporulating, strict or facultative anaerobes that are capable of thriving in a diverse set of ecological niches. Gordonibacter species are the only members capable of motility by means of flagella within the class. Several species within the Coriobacteriia class have been implicated with human diseases that range in severity. Atopobium, Olsenella, and Cryptobacterium species have responsible for human oral infections including periodontitis, halitosis, and other endodontic infections. Eggerthella species have been associated with severe blood bacteraemia and ulcerative colitis.
Haloferacaceae is a family of halophilic, chemoorganotrophic or heterotrophic archaea within the order Haloferacales. The type genus of this family is Haloferax. Its biochemical characteristics are the same as the order Haloferacales.
Natrialbales is an order of halophilic, chemoorganotrophic archaea within the class Haloarchaea. The type genus of this order is Natrialba.
Halorubraceae is a family of halophilic, chemoorganotrophic or heterotrophic archaea within the order Haloferacales. The type genus of this family is Halorubrum. Its biochemical characteristics are the same as the order Haloferacales.
Rhodanobacteraceae is a family of bacteria of the order Xanthomonadales. The type genus is Rhodanobacter.
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