Thermus | |
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Thermus aquaticus | |
Scientific classification | |
Domain: | Bacteria |
Phylum: | Deinococcota |
Class: | Deinococci |
Order: | Thermales |
Family: | Thermaceae |
Genus: | Thermus Brock & Freeze 1969 |
Type species | |
Thermus aquaticus Brock & Freeze 1969 | |
Species | |
See text |
Thermus is a genus of thermophilic bacteria. It is one of several bacteria belonging to the Deinococcota phylum. According to comparative analysis of 16S rRNA, this is one the most ancient group of bacteria [1] Thermus species can be distinguished from other genera in the family Thermaceae as well as all other bacteria by the presence of eight conserved signature indels found in proteins such as adenylate kinase and replicative DNA helicase as well as 14 conserved signature proteins that are exclusively shared by members of this genus. [2]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [3] and the National Center for Biotechnology Information (NCBI). [4] [5] [6]
Between all its species, T. thermophilus has a special importance as a model organism for basic and applied research.
16S rRNA based LTP_08_2023 [7] [8] [9] | 120 marker proteins based GTDB 08-RS214 [10] [11] [12] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Species incertae sedis: [26]
The strains of the genus Thermus are generally isolated from hydrothermal areas where the range of water temperature is 55–70 °C and that of pH is 5.0–10.5. [27]
The first isolate of the genus Thermus was isolated from hydrothermal areas in Yellowstone National Park. [5] Later on more isolates were obtained from several hydrothermal areas worldwide, [27] such as in Japan, [28] [29] Iceland, [30] New Zealand, New Mexico or the Australian Artesian Basin.
The Thermomicrobia is a group of thermophilic green non-sulfur bacteria. Based on species Thermomicrobium roseum and Sphaerobacter thermophilus, this bacteria class has the following description:
Halomonadaceae is a family of halophilic Pseudomonadota.
Sulfur-reducing bacteria are microorganisms able to reduce elemental sulfur (S0) to hydrogen sulfide (H2S). These microbes use inorganic sulfur compounds as electron acceptors to sustain several activities such as respiration, conserving energy and growth, in absence of oxygen. The final product of these processes, sulfide, has a considerable influence on the chemistry of the environment and, in addition, is used as electron donor for a large variety of microbial metabolisms. Several types of bacteria and many non-methanogenic archaea can reduce sulfur. Microbial sulfur reduction was already shown in early studies, which highlighted the first proof of S0 reduction in a vibrioid bacterium from mud, with sulfur as electron acceptor and H
2 as electron donor. The first pure cultured species of sulfur-reducing bacteria, Desulfuromonas acetoxidans, was discovered in 1976 and described by Pfennig Norbert and Biebel Hanno as an anaerobic sulfur-reducing and acetate-oxidizing bacterium, not able to reduce sulfate. Only few taxa are true sulfur-reducing bacteria, using sulfur reduction as the only or main catabolic reaction. Normally, they couple this reaction with the oxidation of acetate, succinate or other organic compounds. In general, sulfate-reducing bacteria are able to use both sulfate and elemental sulfur as electron acceptors. Thanks to its abundancy and thermodynamic stability, sulfate is the most studied electron acceptor for anaerobic respiration that involves sulfur compounds. Elemental sulfur, however, is very abundant and important, especially in deep-sea hydrothermal vents, hot springs and other extreme environments, making its isolation more difficult. Some bacteria – such as Proteus, Campylobacter, Pseudomonas and Salmonella – have the ability to reduce sulfur, but can also use oxygen and other terminal electron acceptors.
Thermus thermophilus is a Gram-negative bacterium used in a range of biotechnological applications, including as a model organism for genetic manipulation, structural genomics, and systems biology. The bacterium is extremely thermophilic, with an optimal growth temperature of about 65 °C (149 °F). Thermus thermophilus was originally isolated from a thermal vent within a hot spring in Izu, Japan by Tairo Oshima and Kazutomo Imahori. The organism has also been found to be important in the degradation of organic materials in the thermogenic phase of composting. T. thermophilus is classified into several strains, of which HB8 and HB27 are the most commonly used in laboratory environments. Genome analyses of these strains were independently completed in 2004. Thermus also displays the highest frequencies of natural transformation known to date.
Microbulbifer is a genus of bacteria found in high-salt environments. Members of this genus can degrade complex carbohydrates such as cellulose, alginate, and chitin. Recently, Microbulbifer degredans was renamed Saccharophagus degredans.
Alteromonas is a genus of Pseudomonadota found in sea water, either in the open ocean or in the coast. It is Gram-negative. Its cells are curved rods with a single polar flagellum.
Ensifer is a genus of nitrogen-fixing bacteria (rhizobia), three of which have been sequenced.
Bacterial phyla constitute the major lineages of the domain Bacteria. While the exact definition of a bacterial phylum is debated, a popular definition is that a bacterial phylum is a monophyletic lineage of bacteria whose 16S rRNA genes share a pairwise sequence identity of ~75% or less with those of the members of other bacterial phyla.
Thermoanaerobacter is a genus in the phylum Bacillota (Bacteria). Members of this genus are thermophilic and anaerobic, several of them were previously described as Clostridium species and members of the now obsolete genera Acetogenium and Thermobacteroides
Dactylosporangium is a genus of bacteria in the phylum Actinomycetota.
Dehalococcoidia is a class of Chloroflexota, a phylum of Bacteria. It is also known as the DHC group.
There are several models of the Branching order of bacterial phyla, one of these was proposed in 1987 paper by Carl Woese.
Desulfosporosinus is a genus of strictly anaerobic, sulfate-reducing bacteria, often found in soil.
Deferribacter autotrophicus is the most recently discovered species in the Deferribacter genus, isolated from a deep sea hydrothermal field. This motile, thermophilic, anaerobic organism stands out for its unique metabolic versatility, particularly its autotrophic capabilities which had not been previously observed in its genus.
Psychrobacter is a genus of Gram-negative, osmotolerant, oxidase-positive, psychrophilic or psychrotolerant, aerobic bacteria which belong to the family Moraxellaceae and the class Gammaproteobacteria. The shape is typically cocci or coccobacilli. Some of those bacteria were isolated from humans and can cause humans infections such as endocarditis and peritonitis. This genus of bacteria is able to grow at temperatures between −10 and 42 °C. Rudi Rossau found through DNA-rRNA hybridization analysis that Psychrobacter belongs to the Moraxellaceae. The first species was described by Juni and Heym. Psychrobacter occur in wide range of moist, cold saline habitats, but they also occur in warm and slightly saline habitats.
Virgibacillus is a genus of Gram-positive, rod-shaped (bacillus) bacteria and a member of the phylum Bacillota. Virgibacillus species can be obligate aerobes, or facultative anaerobes and catalase enzyme positive. Under stressful environmental conditions, the bacteria can produce oval or ellipsoidal endospores in terminal, or sometimes subterminal, swollen sporangia. The genus was recently reclassified from the genus Bacillus in 1998 following an analysis of the species V. pantothenticus. Subsequently, a number of new species have been discovered or reclassified as Virgibacillus species.
Streptomyces thermocoprophilus is a thermophilic bacterium species from the genus of Streptomyces which has been isolated from poultry faeces in Malaysia.
Caloranaerobacter is a Gram-negative, thermophilic, anaerobic and chemoorganotrophic bacterial genus from the family of Clostridiaceae.
Hippea is an obligate anaerobic and moderately thermophilic bacteria genus from the family of Desulfobacteraceae. Hippea is named after the German microbiologist Hans Hippe.
Rhodothermus is a genus of bacteria.