Pyrolobus fumarii

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Pyrolobus fumarii
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Scientific classification
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Pyrolobus
Binomial name
Pyrolobus fumarii
Blöch, Rachel, Burggraf, Hafenbradl, Jannasch & Stetter, 1997

Pyrolobus fumarii (Latin for "fire lobe of the chimney" [1] ) is a species of archaea known for living and reproducing at extremely high temperatures that kill most organisms. [1] [2] P. fumarii is known as a hyperthermophile obligately chemolithoautotroph. In the simplest terms, this archaea grows best in warm temperatures ranging from 80 °C to 115 °C. [3] [4] It also uses preformed molecules as its energy source rather than light, inorganic as an electron donor, and CO2 is used as a carbon source. It was first discovered in 1997 in a black smoker hydrothermal vent at the Mid-Atlantic Ridge, setting the upper-temperature threshold for known life to exist at 113 °C (235.4 °F) with an optimal temperature of 106 °C. [1] This species "freezes" or solidifies and ceases growth at temperatures of 90 °C (194 °F) and below. [3]

Contents

Metabolism

Pyrolobus fumarii are capable of cellular growth and survival in a temperature range between 90 °C and 113 °C with their optimum temperature being around 106 °C. There are only a few species that are known to survive at this temperature. They require a pH range of around 4 - 6.5 which is relatively more acidic than neutral to grow. [5] Adding onto this for optimal growth and survival of the microbe 1% - 4% NaCl is needed to maintain the correct osmolarity of the cell. High pressure is not a concern for growth as metabolism was found at 25,000 kPa for 22 hours. [2] An important distinction to be made about this archaea is that it does not grow in media containing acetate, pyruvate, glucose, starch, and elementary sulfur. Its sol terminal electron acceptor is a nitrate, NO3-. Nitrate is not the most desired terminal electron acceptor due to the fact that it has a much smaller ATP yield. A study found that P. fumarii contained capabilities of growing by thiosulfate reduction, however, with NH4 Cl present the archaea growth resulted in a fivefold yield[2]. For P. fumarii reduction of succinyl-CoA, which is used in the process of generating energy in the cell, does not rely on NAD(p)H but instead requires reduced methyl viologen. It is theorized that P. fumarii thermostability is due to the accumulation of unusual organic solutes. One of these solutes is theorized to play a role in di-myo-inositol phosphate (DIP) as it is associated with the heat stress response. [1] Some studies found that a similar archaea species P. furiosus increased 20-fold when under a temperature shift from 95 °C to 101 °C with the presence of DIP. [4]

Electron microscope images of Pyrolobus fumarii after Epon embedding and freeze-substitution. Pyrolobus fumarii Cell Structure.jpg
Electron microscope images of Pyrolobus fumarii after Epon embedding and freeze-substitution.

Structure

Scanning Electron Micrograph of Pyrolobus fumarii Electron Microscopic Image of Pyrolobus fumarii.jpg
Scanning Electron Micrograph of Pyrolobus fumarii

P. fumarii structure contains an S-layer, commonly found in non-lab prokaryotic strains, which stimulates a pore with a depression in the middle. The archaea also contain a cytoplasmic membrane and periplasmic space. Major core lipids with this strain are uncyclized glycerol-dialkyl-glycerol-tetraether (GDGT) and traces of 2,3-di-o-phytanyl-sn-glycerol (diether). They are described as regularly irregularly shaped cocci meaning they are relatively round and singularly grouped not chained. [5] Shape wise P. fumarii is cocci-shaped however does not form a perfectly round shape instead forms a more lobe shape with a diameter between 0.7 and 2.5 µm. [6]

Application

Understanding P. fumarii ability to withstand high temperatures and its genome capabilities to be thermostable and heat-tolerant lead to many pharmaceutical, agricultural, and industrial applications. Products that could use a thermostable microorganism include agricultural product processing enzymes, bioremediation applications, industrial and consumer product enzymes, and even pharmaceutical applications with where a highly thermostable organism is needed. [3] When working with this culture it would be advised to work in conditions under 85 °C as there is no growth for P. fumarii below this temperature. [6] It is important to keep in mind this prevents growth however it does not kill the archaea. This understanding can be incorporated into laboratory practices when handling the species.

Related Research Articles

<span class="mw-page-title-main">Thermophile</span> Organism that thrives at relatively high temperatures

A thermophile is an organism—a type of extremophile—that thrives at relatively high temperatures, between 41 and 122 °C. Many thermophiles are archaea, though some of them are bacteria and fungi. Thermophilic eubacteria are suggested to have been among the earliest bacteria.

A hyperthermophile is an organism that thrives in extremely hot environments—from 60 °C (140 °F) upwards. An optimal temperature for the existence of hyperthermophiles is often above 80 °C (176 °F). Hyperthermophiles are often within the domain Archaea, although some bacteria are also able to tolerate extreme temperatures. Some of these bacteria are able to live at temperatures greater than 100 °C, deep in the ocean where high pressures increase the boiling point of water. Many hyperthermophiles are also able to withstand other environmental extremes, such as high acidity or high radiation levels. Hyperthermophiles are a subset of extremophiles. Their existence may support the possibility of extraterrestrial life, showing that life can thrive in environmental extremes.

Methanopyrus is a genus of methanogen, with a single described species, Methanopyrus kandleri. It is a rod-shaped hyperthermophile, discovered on the wall of a black smoker from the Gulf of California at a depth of 2,000 m, at temperatures of 84–110 °C. Strain 116 was discovered in black smoker fluid of the Kairei hydrothermal field; it can survive and reproduce at 122 °C. M. kandleri also requires a high ionic concentration in order for growth and cellular activity. Due to the species' high resilience and extreme environment, M. kandleri is also classified as an extremophile. It lives in a hydrogen-carbon dioxide rich environment, and like other methanogens reduces the latter to methane. It is placed among the Euryarchaeota, in its own class.

Strain 121 is a single-celled microbe of the domain Archaea. First discovered 320 km (200 mi) off Puget Sound near a hydrothermal vent, it is a hyperthermophile, able to reproduce at 121 °C (250 °F), hence its name. It was the only known form of life that could tolerate such high temperatures. A temperature of 130 °C (266 °F) is biostatic for Strain 121, meaning that although growth is halted, the archaeon remains viable, and can resume reproducing once it has been transferred to a cooler medium. The ability to grow at 121 °C (250 °F) is significant because medical equipment is exposed to this temperature for sterilization in an autoclave. Prior to the 2003 discovery of Strain 121, a fifteen-minute exposure to autoclave temperatures was believed to kill all living organisms. However, Strain 121 is not infectious in humans, because it cannot grow at temperatures near 37 °C (99 °F). Strain 121 metabolizes by reducing iron oxide.

<i>Pyrococcus furiosus</i> Species of archaeon

Pyrococcus furiosus is a heterotrophic, strictly anaerobic, extremophilic, model species of archaea. It is classified as a hyperthermophile because it thrives best under extremely high temperatures, and is notable for having an optimum growth temperature of 100 °C. P. furiosus belongs to the Pyrococcus genus, most commonly found in extreme environmental conditions of hydrothermal vents. It is one of the few prokaryotic organisms that has enzymes containing tungsten, an element rarely found in biological molecules.

<i>Pyrolobus</i> Genus of archaea

Pyrolobus is a genus of the Pyrodictiaceae.

Ignisphaera is a genus of the Desulfurococcales. Ignisphaera aggregans is a coccoid- shaped, fourth type strain that is strictly anaerobes with anaerobic respiration. This archaea species are hyperthermophiles that were found in New Zealand's hot springs in Kuirau Park, Rotorua.

Caldococcus is a genus of Archaea in the order Desulfurococcales.

Aeropyrum pernix is a species of extremophile archaea in the archaeal phylum Thermoproteota. It is an obligatorily thermophilic species. The first specimens were isolated from sediments in the sea off the coast of Japan.

Thermococcus litoralis is a species of Archaea that is found around deep-sea hydrothermal vents as well as shallow submarine thermal springs and oil wells. It is an anaerobic organotroph hyperthermophile that is between 0.5–3.0 μm (20–118 μin) in diameter. Like the other species in the order thermococcales, T. litoralis is an irregular hyperthermophile coccus that grows between 55–100 °C (131–212 °F). Unlike many other thermococci, T. litoralis is non-motile. Its cell wall consists only of a single S-layer that does not form hexagonal lattices. Additionally, while many thermococcales obligately use sulfur as an electron acceptor in metabolism, T. litoralis only needs sulfur to help stimulate growth, and can live without it. T. litoralis has recently been popularized by the scientific community for its ability to produce an alternative DNA polymerase to the commonly used Taq polymerase. The T. litoralis polymerase, dubbed the vent polymerase, has been shown to have a lower error rate than Taq but due to its proofreading 3’–5’ exonuclease abilities.

Thermococcus celer is a Gram-negative, spherical-shaped archaeon of the genus Thermococcus. The discovery of T. celer played an important role in rerooting the tree of life when T. celer was found to be more closely related to methanogenic Archaea than to other phenotypically similar thermophilic species. T. celer was the first archaeon discovered to house a circularized genome. Several type strains of T. celer have been identified: Vu13, ATCC 35543, and DSM 2476.

<i>Thermococcus gammatolerans</i> Species of archaeon

Thermococcus gammatolerans is an archaea extremophile and the most radiation-resistant organism known to exist.

Thermococcus kodakarensis is a species of thermophilic archaea. The type strain T. kodakarensis KOD1 is one of the best-studied members of the genus.

Thermoplasma volcanium is a moderate thermoacidophilic archaea isolated from acidic hydrothermal vents and solfatara fields. It contains no cell wall and is motile. It is a facultative anaerobic chemoorganoheterotroph. No previous phylogenetic classifications have been made for this organism. Thermoplasma volcanium reproduces asexually via binary fission and is nonpathogenic.

<i>Methanohalophilus mahii</i> Species of archaeon

Methanohalophilus mahii is an obligately anaerobic, methylotrophic, methanogenic cocci-shaped archaeon of the genus Methanohalophilus that can be found in high salinity aquatic environments. The name Methanohalophilus is said to be derived from methanum meaning "methane" in Latin; halo meaning "salt" in Greek; and mahii meaning "of Mah" in Latin, after R.A. Mah, who did substantial amounts of research on aerobic and methanogenic microbes. The proper word in ancient Greek for "salt" is however hals (ἅλς). The specific strain type was designated SLP and is currently the only identified strain of this species.

This article discusses the Unique properties of hyperthermophilic archaea. Hyperthermophiles are organisms that can live at temperatures ranging between 70 and 125 °C. They have been the subject of intense study since their discovery in 1977 in the Galapagos Rift. It was thought impossible for life to exist at temperatures as great as 100 °C until Pyrolobus fumarii was discovered in 1997. P. fumarii is a unicellular organism from the domain Archaea living in the hydrothermal vents in black smokers along the Mid-Atlantic Ridge. These organisms can live at 106 °C at a pH of 5.5. To get energy from their environment these organisms are facultatively aerobic obligate chemolithoautotrophs, meaning these organisms build biomolecules by harvesting carbon dioxide (CO2) from their environment by using hydrogen (H2) as the primary electron donor and nitrate (NO3) as the primary electron acceptor. These organisms can even survive the autoclave, which is a machine designed to kill organisms through high temperature and pressure. Because hyperthermophiles live in such hot environments, they must have DNA, membrane, and enzyme modifications that help them withstand intense thermal energy. Such modifications are currently being studied to better understand what allows an organism or protein to survive such harsh conditions. By learning what lets these organisms survive such harsh conditions, researchers can better synthesize molecules for industry that are harder to denature.

Persephonella marina is a Gram-negative, rod shaped bacteria that is a member of the Aquificota phylum. Stemming from Greek, the name Persephonella is based upon the mythological goddess Persephone. Marina stems from a Latin origin, meaning "belonging to the sea". It is a thermophile with an obligate chemolithoautotrophic metabolism. Growth of P. marina can occur in pairs or individually, but is rarely seen aggregating in large groups. The organism resides on sulfidic chimneys in the deep ocean and has never been documented as a pathogen.

Saccharolobus solfataricus is a species of thermophilic archaeon. It was transferred from the genus Sulfolobus to the new genus Saccharolobus with the description of Saccharolobus caldissimus in 2018.

Methanocaldococcussp. FS406-22 is an archaea in the genus Methanocaldococcus. It is an anaerobic, piezophilic, diazotrophic, hyperthermophilic marine archaeon. This strain is notable for fixing nitrogen at the highest known temperature of nitrogen fixers recorded to date. The 16S rRNA gene of Methanocaldococcus sp. FS406-22, is almost 100% similar to that of Methanocaldococcus jannaschii, a non-nitrogen fixer.

Haloterrigena turkmenica is an aerobic chemo organotrophic archeon originally found in Turkish salt lakes.

References

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  2. 1 2 C.Michael Hogan. 2010. Extremophile. eds. E.Monosson and C.Cleveland. Encyclopedia of Earth. National Council for Science and the Environment, washington DC
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  4. 1 2 Mohanty, Anee; Shilpa; Meena, Sumer Singh (2022). "Microbial adaptation to extreme temperatures: An overview of molecular mechanisms to industrial application". Extremozymes and Their Industrial Applications. pp. 115–139. doi:10.1016/B978-0-323-90274-8.00009-5. ISBN   978-0-323-90274-8.
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Further reading

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