Lithophiles are micro-organisms that can live within the pore interstices of sedimentary and even fractured igneous rocks to depths of several kilometers.
Some are known to live on surface rocks, and make use of photosynthesis for energy.
Those that live in deeper rocks cannot use photosynthesis to gather energy, but instead extract energy from minerals around them. They live in cracks in the rock where water seeps down. The water contains dissolved carbon dioxide (CO2) which the organisms use for their carbon needs. [1] They have been detected in rocks down to depths of nearly three km, where the temperature is approximately 75 °C.
Terrestrial lithophiles can be found in canyons primarily composed of granite, an igneous rock, and soils saturated with fractured rock. [2] Organisms from the genus Elliptochloris, a subaerial photosynthetic green algae, [3] demonstrate lithophilic preferences through colonization in granite cracks and in proximity to terrestrial lichens. [2] Lithophilic lichens from the genus Collema form tight symbiotic relationships between fungi and photosynthetic algae such as Elliptochloris in order to produce necessary saturated fatty acid secondary metabolites. [4] Lithophilic algal species colonizing fractured rock outcroppings individually exhibit coccal morphological shape while aggregating into an elliptical or globular arrangement during adulthood. [5]
Lithobiontic ecological niches further classify lithophiles into sub-categories determined by their spatial niche specificity. The term, lithic, refers to an association with rock and can be further explained by the term, lithobiontic, regarded as organisms living both on, and within rock surfaces. [6] Sub-surface rock organisms, endoliths, primarily exhibit niche preference within fissures, cavities, or tunnels of various rocks. While many endoliths degrade and effectively excavate the available carbonate rock surface, many are preyed upon by select gastropod, and echinoderm species. This habitat preference can be further threatened by suspension feeding organisms searching for acquired shelter. [6]
Photosynthesis is a biological process used by many cellular organisms to convert light energy into chemical energy, which is stored in organic compounds that can later be metabolized through cellular respiration to fuel the organism's activities. The term usually refers to oxygenic photosynthesis, where oxygen is produced as a byproduct, and some of the chemical energy produced is stored in carbohydrate molecules such as sugars, starch and cellulose, which are synthesized from endergonic reaction of carbon dioxide with water. Most plants, algae and cyanobacteria perform photosynthesis; such organisms are called photoautotrophs. Photosynthesis is largely responsible for producing and maintaining the oxygen content of the Earth's atmosphere, and supplies most of the biological energy necessary for complex life on Earth.
An epiphyte is a plant or plant-like organism that grows on the surface of another plant and derives its moisture and nutrients from the air, rain, water or from debris accumulating around it. The plants on which epiphytes grow are called phorophytes. Epiphytes take part in nutrient cycles and add to both the diversity and biomass of the ecosystem in which they occur, like any other organism. They are an important source of food for many species. Typically, the older parts of a plant will have more epiphytes growing on them. Epiphytes differ from parasites in that they grow on other plants for physical support and do not necessarily affect the host negatively. An organism that grows on another organism that is not a plant may be called an epibiont. Epiphytes are usually found in the temperate zone or in the tropics. Epiphyte species make good houseplants due to their minimal water and soil requirements. Epiphytes provide a rich and diverse habitat for other organisms including animals, fungi, bacteria, and myxomycetes.
Weathering is the deterioration of rocks, soils and minerals as well as wood and artificial materials through contact with water, atmospheric gases, and biological organisms. Weathering occurs in situ, and so is distinct from erosion, which involves the transport of rocks and minerals by agents such as water, ice, snow, wind, waves and gravity.
An endolith or endolithic is an organism that is able to acquire the necessary resources for growth in the inner part of a rock, mineral, coral, animal shells, or in the pores between mineral grains of a rock. Many are extremophiles, living in places long considered inhospitable to life. The distribution, biomass, and diversity of endolith microorganisms are determined by the physical and chemical properties of the rock substrate, including the mineral composition, permeability, the presence of organic compounds, the structure and distribution of pores, water retention capacity, and the pH. Normally, the endoliths colonize the areas within lithic substrates to withstand intense solar radiation, temperature fluctuations, wind, and desiccation. They are of particular interest to astrobiologists, who theorize that endolithic environments on Mars and other planets constitute potential refugia for extraterrestrial microbial communities.
A lichen is a composite organism that arises from algae or cyanobacteria living among filaments of multiple fungi species in a mutualistic relationship. Lichens are important actors in nutrient cycling and act as producers which many higher trophic feeders feed on, such as reindeer, gastropods, nematodes, mites, and springtails. Lichens have properties different from those of their component organisms. They come in many colors, sizes, and forms and are sometimes plant-like, but are not plants. They may have tiny, leafless branches (fruticose); flat leaf-like structures (foliose); grow crust-like, adhering tightly to a surface (substrate) like a thick coat of paint (crustose); have a powder-like appearance (leprose); or other growth forms.
Petrology is the branch of geology that studies rocks and the conditions under which they form. Petrology has three subdivisions: igneous, metamorphic, and sedimentary petrology. Igneous and metamorphic petrology are commonly taught together because both make heavy use of chemistry, chemical methods, and phase diagrams. Sedimentary petrology is commonly taught together with stratigraphy because it deals with the processes that form sedimentary rock. Modern sedimentary petrology is making increasing use of chemisty.
The pedosphere is the outermost layer of the Earth that is composed of soil and subject to soil formation processes. It exists at the interface of the lithosphere, atmosphere, hydrosphere and biosphere. The pedosphere is the skin of the Earth and only develops when there is a dynamic interaction between the atmosphere, biosphere, lithosphere and the hydrosphere. The pedosphere is the foundation of terrestrial life on Earth.
Phototrophs are organisms that carry out photon capture to produce complex organic compounds and acquire energy. They use the energy from light to carry out various cellular metabolic processes. It is a common misconception that phototrophs are obligatorily photosynthetic. Many, but not all, phototrophs often photosynthesize: they anabolically convert carbon dioxide into organic material to be utilized structurally, functionally, or as a source for later catabolic processes. All phototrophs either use electron transport chains or direct proton pumping to establish an electrochemical gradient which is utilized by ATP synthase, to provide the molecular energy currency for the cell. Phototrophs can be either autotrophs or heterotrophs. If their electron and hydrogen donors are inorganic compounds they can be also called lithotrophs, and so, some photoautotrophs are also called photolithoautotrophs. Examples of phototroph organisms are Rhodobacter capsulatus, Chromatium, and Chlorobium.
Biological soil crusts are communities of living organisms on the soil surface in arid and semi-arid ecosystems. They are found throughout the world with varying species composition and cover depending on topography, soil characteristics, climate, plant community, microhabitats, and disturbance regimes. Biological soil crusts perform important ecological roles including carbon fixation, nitrogen fixation and soil stabilization; they alter soil albedo and water relations and affect germination and nutrient levels in vascular plants. They can be damaged by fire, recreational activity, grazing and other disturbances and can require long time periods to recover composition and function. Biological soil crusts are also known as biocrusts or as cryptogamic, microbiotic, microphytic, or cryptobiotic soils.
The rock cycle is a basic concept in geology that describes transitions through geologic time among the three main rock types: sedimentary, metamorphic, and igneous. Each rock type is altered when it is forced out of its equilibrium conditions. For example, an igneous rock such as basalt may break down and dissolve when exposed to the atmosphere, or melt as it is subducted under a continent. Due to the driving forces of the rock cycle, plate tectonics and the water cycle, rocks do not remain in equilibrium and change as they encounter new environments. The rock cycle explains how the three rock types are related to each other, and how processes change from one type to another over time. This cyclical aspect makes rock change a geologic cycle and, on planets containing life, a biogeochemical cycle.
Dictyochloropsis is a genus of unicellular green alga of the phylum Chlorophyta. This genus consists of free-living algae which have a reticulate (net-like) chloroplast that varies slightly in morphology between species, and that when mature always lacks a pyrenoid. Dictyochloropsis is asexual and reproduces using autospores.
Trebouxia is a unicellular green alga. It is a photosynthetic organism that can exist in almost all habitats found in polar, tropical, and temperate regions. It can either exist in a symbiotic relationship with fungi in the form of lichen or it can survive independently as a free-living organism alone or in colonies. Trebouxia is the most common photobiont in extant lichens. It is a primary producer of marine, freshwater and terrestrial ecosystems. It uses carotenoids and chlorophyll a and b to harvest energy from the sun and provide nutrients to various animals and insects.
This glossary of geology is a list of definitions of terms and concepts relevant to geology, its sub-disciplines, and related fields. For other terms related to the Earth sciences, see Glossary of geography terms.
A microbial mat is a multi-layered sheet of microorganisms, mainly bacteria and archaea, or bacteria alone. Microbial mats grow at interfaces between different types of material, mostly on submerged or moist surfaces, but a few survive in deserts. A few are found as endosymbionts of animals.
Igneous rock, or magmatic rock, is one of the three main rock types, the others being sedimentary and metamorphic. Igneous rocks are formed through the cooling and solidification of magma or lava.
An autotroph is an organism that produces complex organic compounds using carbon from simple substances such as carbon dioxide, generally using energy from light (photosynthesis) or inorganic chemical reactions (chemosynthesis). They convert an abiotic source of energy into energy stored in organic compounds, which can be used by other organisms. Autotrophs do not need a living source of carbon or energy and are the producers in a food chain, such as plants on land or algae in water. Autotrophs can reduce carbon dioxide to make organic compounds for biosynthesis and as stored chemical fuel. Most autotrophs use water as the reducing agent, but some can use other hydrogen compounds such as hydrogen sulfide.
Crustose lichens are lichens that form a crust which strongly adheres to the substrate, making separation from the substrate impossible without destruction. The basic structure of crustose lichens consists of a cortex layer, an algal layer, and a medulla. The upper cortex layer is differentiated and is usually pigmented. The algal layer lies beneath the cortex. The medulla fastens the lichen to the substrate and is made up of fungal hyphae. The surface of crustose lichens is characterized by branching cracks that periodically close in response to climatic variations such as alternate wetting and drying regimes.
The geology of Nigeria formed beginning in the Archean and Proterozoic eons of the Precambrian. The country forms the Nigerian Province and more than half of its surface is igneous and metamorphic crystalline basement rock from the Precambrian. Between 2.9 billion and 500 million years ago, Nigeria was affected by three major orogeny mountain-building events and related igneous intrusions. Following the Pan-African orogeny, in the Cambrian at the time that multi-cellular life proliferated, Nigeria began to experience regional sedimentation and witnessed new igneous intrusions. By the Cretaceous period of the late Mesozoic, massive sedimentation was underway in different basins, due to a large marine transgression. By the Eocene, in the Cenozoic, the region returned to terrestrial conditions.
The deep biosphere is the part of the biosphere that resides below the first few meters of the surface. It extends down at least 5 kilometers below the continental surface and 10.5 kilometers below the sea surface, at temperatures that may reach beyond 120 °C, which is comparable to the maximum temperature where a metabolically active organism has been found. It includes all three domains of life and the genetic diversity rivals that on the surface.
Marine primary production is the chemical synthesis in the ocean of organic compounds from atmospheric or dissolved carbon dioxide. It principally occurs through the process of photosynthesis, which uses light as its source of energy, but it also occurs through chemosynthesis, which uses the oxidation or reduction of inorganic chemical compounds as its source of energy. Almost all life on Earth relies directly or indirectly on primary production. The organisms responsible for primary production are called primary producers or autotrophs.
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