A base pair (bp) is a fundamental unit of double-stranded nucleic acids consisting of two nucleobases bound to each other by hydrogen bonds. They form the building blocks of the DNA double helix and contribute to the folded structure of both DNA and RNA. Dictated by specific hydrogen bonding patterns, "Watson–Crick" base pairs allow the DNA helix to maintain a regular helical structure that is subtly dependent on its nucleotide sequence. The complementary nature of this based-paired structure provides a redundant copy of the genetic information encoded within each strand of DNA. The regular structure and data redundancy provided by the DNA double helix make DNA well suited to the storage of genetic information, while base-pairing between DNA and incoming nucleotides provides the mechanism through which DNA polymerase replicates DNA and RNA polymerase transcribes DNA into RNA. Many DNA-binding proteins can recognize specific base-pairing patterns that identify particular regulatory regions of genes.
The beta sheet, (β-sheet) is a common motif of the regular protein secondary structure. Beta sheets consist of beta strands (β-strands) connected laterally by at least two or three backbone hydrogen bonds, forming a generally twisted, pleated sheet. A β-strand is a stretch of polypeptide chain typically 3 to 10 amino acids long with backbone in an extended conformation. The supramolecular association of β-sheets has been implicated in the formation of the fibrils and protein aggregates observed in amyloidosis, Alzheimer's disease and other proteinopathies.
Deoxyribonucleic acid is a polymer composed of two polynucleotide chains that coil around each other to form a double helix. The polymer carries genetic instructions for the development, functioning, growth and reproduction of all known organisms and many viruses. DNA and ribonucleic acid (RNA) are nucleic acids. Alongside proteins, lipids and complex carbohydrates (polysaccharides), nucleic acids are one of the four major types of macromolecules that are essential for all known forms of life.
A DNA virus is a virus that has a genome made of deoxyribonucleic acid (DNA) that is replicated by a DNA polymerase. They can be divided between those that have two strands of DNA in their genome, called double-stranded DNA (dsDNA) viruses, and those that have one strand of DNA in their genome, called single-stranded DNA (ssDNA) viruses. dsDNA viruses primarily belong to two realms: Duplodnaviria and Varidnaviria, and ssDNA viruses are almost exclusively assigned to the realm Monodnaviria, which also includes some dsDNA viruses. Additionally, many DNA viruses are unassigned to higher taxa. Reverse transcribing viruses, which have a DNA genome that is replicated through an RNA intermediate by a reverse transcriptase, are classified into the kingdom Pararnavirae in the realm Riboviria.
A primer is a short single-stranded nucleic acid used by all living organisms in the initiation of DNA synthesis. A synthetic primer may also be referred to as an oligo, short for oligonucleotide. DNA polymerase enzymes are only capable of adding nucleotides to the 3’-end of an existing nucleic acid, requiring a primer be bound to the template before DNA polymerase can begin a complementary strand. DNA polymerase adds nucleotides after binding to the RNA primer and synthesizes the whole strand. Later, the RNA strands must be removed accurately and replace them with DNA nucleotides forming a gap region known as a nick that is filled in using an enzyme called ligase. The removal process of the RNA primer requires several enzymes, such as Fen1, Lig1, and others that work in coordination with DNA polymerase, to ensure the removal of the RNA nucleotides and the addition of DNA nucleotides. Living organisms use solely RNA primers, while laboratory techniques in biochemistry and molecular biology that require in vitro DNA synthesis usually use DNA primers, since they are more temperature stable. Primers can be designed in laboratory for specific reactions such as polymerase chain reaction (PCR). When designing PCR primers, there are specific measures that must be taken into consideration, like the melting temperature of the primers and the annealing temperature of the reaction itself. Moreover, the DNA binding sequence of the primer in vitro has to be specifically chosen, which is done using a method called basic local alignment search tool (BLAST) that scans the DNA and finds specific and unique regions for the primer to bind.
Beaked whales are a family of cetaceans noted as being one of the least-known groups of mammals because of their deep-sea habitat, reclusive behavior and apparent low abundance. Only three or four of the 24 existing species are reasonably well-known. Baird's beaked whales and Cuvier's beaked whales were subject to commercial exploitation, off the coast of Japan, while the northern bottlenose whale was extensively hunted in the northern part of the North Atlantic in the late 19th and early 20th centuries.
Transcription is the process of copying a segment of DNA into RNA. The segments of DNA transcribed into RNA molecules that can encode proteins are said to produce messenger RNA (mRNA). Other segments of DNA are copied into RNA molecules called non-coding RNAs (ncRNAs). mRNA comprises only 1–3% of total RNA samples. Less than 2% of the human genome can be transcribed into mRNA, while at least 80% of mammalian genomic DNA can be actively transcribed, with the majority of this 80% considered to be ncRNA.
A DNA polymerase is a member of a family of enzymes that catalyze the synthesis of DNA molecules from nucleoside triphosphates, the molecular precursors of DNA. These enzymes are essential for DNA replication and usually work in groups to create two identical DNA duplexes from a single original DNA duplex. During this process, DNA polymerase "reads" the existing DNA strands to create two new strands that match the existing ones. These enzymes catalyze the chemical reaction
The melon-headed whale, also known less commonly as the electra dolphin, little killer whale, or many-toothed blackfish, is a toothed whale of the oceanic dolphin family (Delphinidae). The common name is derived from the head shape. Melon-headed whales are widely distributed throughout deep tropical and subtropical waters worldwide, but they are rarely encountered at sea. They are found near shore mostly around oceanic islands, such as Hawaii, French Polynesia, and the Philippines.
Cetacean stranding, commonly known as beaching, is a phenomenon in which whales and dolphins strand themselves on land, usually on a beach. Beached whales often die due to dehydration, collapsing under their own weight, or drowning when high tide covers the blowhole. Cetacean stranding has occurred since before recorded history.
The Strand Magazine was a monthly British magazine founded by George Newnes, composed of short fiction and general interest articles. It was published in the United Kingdom from January 1891 to March 1950, running to 711 issues, though the first issue was on sale well before Christmas 1890. Its immediate popularity is evidenced by an initial sale of nearly 300,000. Sales increased in the early months, before settling down to a circulation of almost 500,000 copies a month, which lasted well into the 1930s.
DNA repair is a collection of processes by which a cell identifies and corrects damage to the DNA molecules that encodes its genome. In human cells, both normal metabolic activities and environmental factors such as radiation can cause DNA damage, resulting in tens of thousands of individual molecular lesions per cell per day. Many of these lesions cause structural damage to the DNA molecule and can alter or eliminate the cell's ability to transcribe the gene that the affected DNA encodes. Other lesions induce potentially harmful mutations in the cell's genome, which affect the survival of its daughter cells after it undergoes mitosis. As a consequence, the DNA repair process is constantly active as it responds to damage in the DNA structure. When normal repair processes fail, and when cellular apoptosis does not occur, irreparable DNA damage may occur, including double-strand breaks and DNA crosslinkages. This can eventually lead to malignant tumors, or cancer as per the two hit hypothesis.
Nodularia is a genus of filamentous nitrogen-fixing cyanobacteria, or blue-green algae. They occur mainly in brackish or salinic waters, such as the hypersaline Makgadikgadi Pans, the Peel-Harvey Estuary in Western Australia or the Baltic Sea. Nodularia cells occasionally form heavy algal blooms. Some strains produce a cyanotoxin called nodularin R, which is harmful to humans.
The Nostocaceae are a family of cyanobacteria that forms filament-shaped colonies enclosed in mucus or a gelatinous sheath. Some genera in this family are found primarily in fresh water, while others are found primarily in salt water. Other genera may be found in both fresh and salt water. Most benthic algae of the order Nostocales belong to this family.
In molecular biology and genetics, the sense of a nucleic acid molecule, particularly of a strand of DNA or RNA, refers to the nature of the roles of the strand and its complement in specifying a sequence of amino acids. Depending on the context, sense may have slightly different meanings. For example, negative-sense strand of DNA is equivalent to the template strand, whereas the positive-sense strand is the non-template strand whose nucleotide sequence is equivalent to the sequence of the mRNA transcript.
In biology, and especially in genetics, a mutant is an organism or a new genetic character arising or resulting from an instance of mutation, which is generally an alteration of the DNA sequence of the genome or chromosome of an organism. It is a characteristic that would not be observed naturally in a specimen. The term mutant is also applied to a virus with an alteration in its nucleotide sequence whose genome is in the nuclear genome. The natural occurrence of genetic mutations is integral to the process of evolution. The study of mutants is an integral part of biology; by understanding the effect that a mutation in a gene has, it is possible to establish the normal function of that gene.
An akinete is an enveloped, thick-walled, non-motile, dormant cell formed by filamentous, heterocyst-forming cyanobacteria under the order Nostocales and Stigonematales. Akinetes are resistant to cold and desiccation. They also accumulate and store various essential material, both of which allows the akinete to serve as a survival structure for up to many years. However, akinetes are not resistant to heat. Akinetes usually develop in strings with each cell differentiating after another and this occurs next to heterocysts if they are present. Development usually occurs during stationary phase and is triggered by unfavorable conditions such as insufficient light or nutrients, temperature, and saline levels in the environment. Once conditions become more favorable for growth, the akinete can then germinate back into a vegetative cell. Increased light intensity, nutrients availability, oxygen availability, and changes in salinity are important triggers for germination. In comparison to vegetative cells, akinetes are generally larger. This is associated with the accumulation of nucleic acids which is important for both dormancy and germination of the akinete. Despite being a resting cell, it is still capable of some metabolic activities such as photosynthesis, protein synthesis, and carbon fixation, albeit at significantly lower levels.
The Ostropomycetidae are a subclass of mostly lichen-forming fungi in the class Lecanoromycetes. The subclass was circumscribed in 2004 by Catherine Reeb, François M. Lutzoni, and Claude Roux. It contains ten orders and 36 families.
Cylindrospermopsis raciborskii is a freshwater cyanobacterium. (name currently accepted taxonomically: Raphidipsis raciborskii)
The Scytonemataceae are a family of filamentous, heterocystous cyanobacteria within the order Nostocales. The family is known from freshwater, marine, and terrestrial environments, where it grows in colonies attached to the substrate. Akinetes are not known, and the members of the family are known to reproduce with nonheterocystous hormogonia.
