Prosthecochloris aestuarii | |
---|---|
Scientific classification | |
Domain: | Bacteria |
Phylum: | Chlorobiota |
Class: | "Chlorobia" |
Order: | Chlorobiales |
Family: | Chlorobiaceae |
Genus: | Prosthecochloris |
Species: | P. aestuarii |
Binomial name | |
Prosthecochloris aestuarii Gorlenko, 1970 emend. Imhoff, 2003 | |
Prosthecochloris aestuarii is a green sulfur bacterium in the genus Prosthecochloris . This organism was originally isolated from brackish lagoons located in Sasyk-Sivash and Sivash. [1] They are characterized by the presence of "prosthecae" on their cell surface; the inner part of these appendages house the photosynthetic machinery within chlorosomes, which are characteristic structures of green sulfur bacteria. Additionally, like other green sulfur bacteria, they are Gram-negative, non-motile, and non-spore forming. [1] Of the four major groups of green sulfur bacteria, P. aestuarii serves as the type species for Group 4. [2]
P. aestuarii are noted to have a more ellipsoidal shape, but may appear spherical after cell division. Additionally, they can range between 0.5 to 0.7 microns in width and 1.0 to 1.2 microns in length, and individual cells can produce up to 20 of the prosthecae appendages. These prosthecae can extend an additional 0.1 to 1.7 microns beyond the cells surface, but the diameters are usually small, ranging between 0.1 to 0.17 microns. [1] It has been found that prosthecae length can be dependent on the light intensity in which P. aestuarii is growing. [3]
P. aestuarii cells have also been noted to form filament-like structures when cell divisions are not fully completed. [1]
Several analyses of evolutionary relationships between the green sulfur bacteria have shown that P. aestuarii consistently clades with other Prosthecochloris species. They tend to rest on a distinct clade, separate from other key genera, like Chlorobaculum, Chlorobium , or Pelodictyon. [2] [4]
Like all other green sulfur bacteria, P. aestuarii gets its energy through a process called anoxygenic photosynthesis. Their major pigment is bacteriochlorophyll c, giving the cultures a green appearance; however, as they age, cultures can become a dirty green/brown, or white with build-up of elemental sulfur. [1] They can they utilize electrons from various electron donors, including sulfide, elemental sulfur, and while P. aestuarii cannot utilize thiosulfate, [1] other Prosthecochloris strains may be able to utilize this electron donor as well. [5]
As a member of the green sulfur bacteria, P. aestuarii only contains Photosystem I, [6] [7] within which a Type I reaction center is housed. [5] Electrons from the reduced sulfur compound are transferred through a menaquinone, the cytochrome bc1 complex, the cytochrome c complex, and finally to the pigment of the reaction center. The electrons continue to be passed down a chain of acceptors once the pigment is excited by photons, including iron-sulfur clusters, within the reaction center until finally being transferred to a ferredoxin protein. Electrons can be further transferred to NAD using a ferredoxin-NADP+ reductase enzyme. [7]
As noted, reduced sulfur compounds provide electrons for photosynthesis and subsequent carbon fixation. [1]
Sulfide:quinone oxidoreductase (SQR) is found in many green sulfur bacteria and is usually responsible for the first steps of sulfide oxidation. This enzyme catalyzes the initial transfer of electrons from sulfide to the menaquinone in photosynthesis. [5]
Most green sulfur bacteria have the operon coding for dissimilatory sulfite reductase (DSR) genes in order to oxidize sulfide. [8] DsrEFH transfers the sulfur atom to DsrC, forming DsrC-trisulfide. Oxidation to sulfite is catalyzed by the DsrAB complex. Other portions of the Dsr pathway contribute to quinone pools throughout the cell. [9]
The final oxidation step from sulfite to sulfate is typically carried out by the Quinone-interacting membrane-bound oxidoreductase (Qmo) / APS reductase (Apr) / Sulfate adenylyltransferase (Sat) complex, [9] yet these genes are notably absent from the genome of P. aestuarii. [10]
Previous growth experiments have found that elemental sulfur seems to be the greatest byproduct of sulfur oxidation, with sulfite and sulfate being below detection levels after growth. [11] Whether or not P. aestuarii is capable of complete oxidation of sulfate is still up for debate.
Like other green sulfur bacteria, P. aestuarii fixes carbon via the reverse tricarboxylic acid (rTCA) cycle (also known as the reverse Krebs cycle). Carbon dioxide (CO2) or bicarbonate (HCO3-), and electrons from reduced ferredoxins, can be used to synthesize acetyl-CoA. This pathway is characterized by the presence of the ATP-dependent citrate lyase, which catalyzes the cleavage of citrate into acetyl-CoA and oxaloacetate. This enzyme replaces citrate synthase, present in the canonical TCA cycle. [5]
P. aestuarii is a diazotroph, able to fix dinitrogen into ammonia via nitrogenase and various cofactors coded for by nif genes. [12]
The green sulfur bacteria are a phylum, Chlorobiota, of obligately anaerobic photoautotrophic bacteria that metabolize sulfur.
Chloroflexus aurantiacus is a photosynthetic bacterium isolated from hot springs, belonging to the green non-sulfur bacteria. This organism is thermophilic and can grow at temperatures from 35 °C to 70 °C. Chloroflexus aurantiacus can survive in the dark if oxygen is available. When grown in the dark, Chloroflexus aurantiacus has a dark orange color. When grown in sunlight it is dark green. The individual bacteria tend to form filamentous colonies enclosed in sheaths, which are known as trichomes.
The purple sulfur bacteria (PSB) are part of a group of Pseudomonadota capable of photosynthesis, collectively referred to as purple bacteria. They are anaerobic or microaerophilic, and are often found in stratified water environments including hot springs, stagnant water bodies, as well as microbial mats in intertidal zones. Unlike plants, algae, and cyanobacteria, purple sulfur bacteria do not use water as their reducing agent, and therefore do not produce oxygen. Instead, they can use sulfur in the form of sulfide, or thiosulfate (as well, some species can use H2, Fe2+, or NO2−) as the electron donor in their photosynthetic pathways. The sulfur is oxidized to produce granules of elemental sulfur. This, in turn, may be oxidized to form sulfuric acid.
Purple bacteria or purple photosynthetic bacteria are Gram-negative proteobacteria that are phototrophic, capable of producing their own food via photosynthesis. They are pigmented with bacteriochlorophyll a or b, together with various carotenoids, which give them colours ranging between purple, red, brown, and orange. They may be divided into two groups – purple sulfur bacteria and purple non-sulfur bacteria. Purple bacteria are anoxygenic phototrophs widely spread in nature, but especially in aquatic environments, where there are anoxic conditions that favor the synthesis of their pigments.
The Chromatiaceae are one of the two families of purple sulfur bacteria, together with the Ectothiorhodospiraceae. They belong to the order Chromatiales of the class Gammaproteobacteria, which is composed by unicellular Gram-negative organisms. Most of the species are photolithoautotrophs and conduct an anoxygenic photosynthesis, but there are also representatives capable of growing under dark and/or microaerobic conditions as either chemolithoautotrophs or chemoorganoheterotrophs.
Sulfate-reducing microorganisms (SRM) or sulfate-reducing prokaryotes (SRP) are a group composed of sulfate-reducing bacteria (SRB) and sulfate-reducing archaea (SRA), both of which can perform anaerobic respiration utilizing sulfate (SO2−
4) as terminal electron acceptor, reducing it to hydrogen sulfide (H2S). Therefore, these sulfidogenic microorganisms "breathe" sulfate rather than molecular oxygen (O2), which is the terminal electron acceptor reduced to water (H2O) in aerobic respiration.
Photoheterotrophs are heterotrophic phototrophs—that is, they are organisms that use light for energy, but cannot use carbon dioxide as their sole carbon source. Consequently, they use organic compounds from the environment to satisfy their carbon requirements; these compounds include carbohydrates, fatty acids, and alcohols. Examples of photoheterotrophic organisms include purple non-sulfur bacteria, green non-sulfur bacteria, and heliobacteria. These microorganisms are ubiquitous in aquatic habitats, occupy unique niche-spaces, and contribute to global biogeochemical cycling. Recent research has also indicated that the oriental hornet and some aphids may be able to use light to supplement their energy supply.
Sulfur-reducing bacteria are microorganisms able to reduce elemental sulfur (S0) to hydrogen sulfide (H2S). These microbes use inorganic sulfur compounds as electron acceptors to sustain several activities such as respiration, conserving energy and growth, in absence of oxygen. The final product of these processes, sulfide, has a considerable influence on the chemistry of the environment and, in addition, is used as electron donor for a large variety of microbial metabolisms. Several types of bacteria and many non-methanogenic archaea can reduce sulfur. Microbial sulfur reduction was already shown in early studies, which highlighted the first proof of S0 reduction in a vibrioid bacterium from mud, with sulfur as electron acceptor and H
2 as electron donor. The first pure cultured species of sulfur-reducing bacteria, Desulfuromonas acetoxidans, was discovered in 1976 and described by Pfennig Norbert and Biebel Hanno as an anaerobic sulfur-reducing and acetate-oxidizing bacterium, not able to reduce sulfate. Only few taxa are true sulfur-reducing bacteria, using sulfur reduction as the only or main catabolic reaction. Normally, they couple this reaction with the oxidation of acetate, succinate or other organic compounds. In general, sulfate-reducing bacteria are able to use both sulfate and elemental sulfur as electron acceptors. Thanks to its abundancy and thermodynamic stability, sulfate is the most studied electron acceptor for anaerobic respiration that involves sulfur compounds. Elemental sulfur, however, is very abundant and important, especially in deep-sea hydrothermal vents, hot springs and other extreme environments, making its isolation more difficult. Some bacteria – such as Proteus, Campylobacter, Pseudomonas and Salmonella – have the ability to reduce sulfur, but can also use oxygen and other terminal electron acceptors.
Microbial metabolism is the means by which a microbe obtains the energy and nutrients it needs to live and reproduce. Microbes use many different types of metabolic strategies and species can often be differentiated from each other based on metabolic characteristics. The specific metabolic properties of a microbe are the major factors in determining that microbe's ecological niche, and often allow for that microbe to be useful in industrial processes or responsible for biogeochemical cycles.
Sulfur is metabolized by all organisms, from bacteria and archaea to plants and animals. Sulfur can have an oxidation state from -2 to +6 and is reduced or oxidized by a diverse range of organisms. The element is present in proteins, sulfate esters of polysaccharides, steroids, phenols, and sulfur-containing coenzymes.
Light-dependent reactions are certain photochemical reactions involved in photosynthesis, the main process by which plants acquire energy. There are two light dependent reactions: the first occurs at photosystem II (PSII) and the second occurs at photosystem I (PSI).
Anoxygenic photosynthesis is a special form of photosynthesis used by some bacteria and archaea, which differs from the better known oxygenic photosynthesis in plants in the reductant used and the byproduct generated.
Rhodovulum sulfidophilum is a gram-negative purple nonsulfur bacteria. The cells are rod-shaped, and range in size from 0.6 to 0.9 μm wide and 0.9 to 2.0 μm long, and have a polar flagella. These cells reproduce asexually by binary fission. This bacterium can grow anaerobically when light is present, or aerobically (chemoheterotrophic) under dark conditions. It contains the photosynthetic pigments bacteriochlorophyll a and of carotenoids.
Chlorobaculum tepidum, previously known as Chlorobium tepidum, is an anaerobic, thermophilic green sulfur bacteria first isolated from New Zealand. Its cells are gram-negative and non-motile rods of variable length. They contain chlorosomes and bacteriochlorophyll a and c.
Arsenate-reducing bacteria are bacteria which reduce arsenates. Arsenate-reducing bacteria are ubiquitous in arsenic-contaminated groundwater (aqueous environment). Arsenates are salts or esters of arsenic acid (H3AsO4), consisting of the ion AsO43−. They are moderate oxidizers that can be reduced to arsenites and to arsine. Arsenate can serve as a respiratory electron acceptor for oxidation of organic substrates and H2S or H2. Arsenates occur naturally in minerals such as adamite, alarsite, legrandite, and erythrite, and as hydrated or anhydrous arsenates. Arsenates are similar to phosphates since arsenic (As) and phosphorus (P) occur in group 15 (or VA) of the periodic table. Unlike phosphates, arsenates are not readily lost from minerals due to weathering. They are the predominant form of inorganic arsenic in aqueous aerobic environments. On the other hand, arsenite is more common in anaerobic environments, more mobile, and more toxic than arsenate. Arsenite is 25–60 times more toxic and more mobile than arsenate under most environmental conditions. Arsenate can lead to poisoning, since it can replace inorganic phosphate in the glyceraldehyde-3-phosphate --> 1,3-biphosphoglycerate step of glycolysis, producing 1-arseno-3-phosphoglycerate instead. Although glycolysis continues, 1 ATP molecule is lost. Thus, arsenate is toxic due to its ability to uncouple glycolysis. Arsenate can also inhibit pyruvate conversion into acetyl-CoA, thereby blocking the TCA cycle, resulting in additional loss of ATP.
Chlorobium chlorochromatii, originally known as Chlorobium aggregatum, is a symbiotic green sulfur bacteria that performs anoxygenic photosynthesis and functions as an obligate photoautotroph using reduced sulfur species as electron donors. Chlorobium chlorochromatii can be found in stratified freshwater lakes.
Dissimilatory sulfate reduction is a form of anaerobic respiration that uses sulfate as the terminal electron acceptor to produce hydrogen sulfide. This metabolism is found in some types of bacteria and archaea which are often termed sulfate-reducing organisms. The term "dissimilatory" is used when hydrogen sulfide is produced in an anaerobic respiration process. By contrast, the term "assimilatory" would be used in relation to the biosynthesis of organosulfur compounds, even though hydrogen sulfide may be an intermediate.
Microbial oxidation of sulfur is the oxidation of sulfur by microorganisms to build their structural components. The oxidation of inorganic compounds is the strategy primarily used by chemolithotrophic microorganisms to obtain energy to survive, grow and reproduce. Some inorganic forms of reduced sulfur, mainly sulfide (H2S/HS−) and elemental sulfur (S0), can be oxidized by chemolithotrophic sulfur-oxidizing prokaryotes, usually coupled to the reduction of oxygen (O2) or nitrate (NO3−). Anaerobic sulfur oxidizers include photolithoautotrophs that obtain their energy from sunlight, hydrogen from sulfide, and carbon from carbon dioxide (CO2).
Dissimilatory sulfite reductase is an enzyme that participates in sulfur metabolism in dissimilatory sulfate reduction.
Thiodictyon is a genus of gram-negative bacterium classified within purple sulfur bacteria (PSB).