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Acidobacteriota is a phylum of Gram-negative bacteria. Its members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture.
Geobacter is a genus of bacteria. Geobacter species are anaerobic respiration bacterial species which have capabilities that make them useful in bioremediation. Geobacter was found to be the first organism with the ability to oxidize organic compounds and metals, including iron, radioactive metals, and petroleum compounds into environmentally benign carbon dioxide while using iron oxide or other available metals as electron acceptors. Geobacter species are also found to be able to respire upon a graphite electrode. They have been found in anaerobic conditions in soils and aquatic sediment.
Desulfovibrio vulgaris is a species of Gram-negative sulfate-reducing bacteria in the Desulfovibrionaceae family. It is also an anaerobic sulfate-reducing bacteria that is an important organism involved in the bioremediation of heavy metals in the environment. Desulfovibrio vulgaris is often used as a model organism for sulfur-reducing bacteria and was the first of such bacteria to have its genome sequenced. It is ubiquitous in nature and has also been implicated in a variety of human bacterial infections, although it may only be an opportunistic pathogen. This microbe also has the ability to endure high salinity environments, which is done through the utilization of osmoprotectants and efflux systems.
Saccharomyces kudriavzevii, is a species of yeast in the Saccharomyces sensu stricto complex. Its type strain is NCYC 2889T. It is used in production of alcoholic beverages, including pinot noir wine, and hybrids of it are used in beer brewing. It is isolated widely from the bark of oak trees.
Geobacter metallireducens is a gram-negative metal-reducing proteobacterium. It is a strict anaerobe that oxidizes several short-chain fatty acids, alcohols, and monoaromatic compounds with Fe(III) as the sole electron acceptor. It can also use uranium for its growth and convert U(VI) to U(IV).
Geobacter sulfurreducens is a gram-negative metal and sulphur-reducing proteobacterium. It is rod-shaped, aerotolerant anaerobe, non-fermentative, has flagellum and type four pili, and is closely related to Geobacter metallireducens. Geobacter sulfurreducens is an anaerobic species of bacteria that comes from the family of bacteria called Geobacteraceae. Under the genus of Geobacter, G. sulfurreducens is one out of twenty different species. The Geobacter genus was discovered by Derek R. Lovley in 1987. G. sulfurreducens was first isolated in Norman, Oklahoma, USA from materials found around the surface of a contaminated ditch.
Roseobacter litoralis is a species of aerobic pink-pigmented bacteria. It contains Bacteriochlorophyll a. It contains spheroidenone, does not synthesize bacteriochlorophyll anaerobically, but shows aerobic phototrophic activity. It is also considered a photosynthetic marine bacterium. Cells are ovoid or rod-shaped and motile by subpolar flagella. R. litoralis does not reduce nitrate, while R. dentrificans does. R. litoralis can be found in marine seaweed.
Vibrio coralliilyticus is a Gram-negative, rod-shaped bacterium. It has a polar flagellum that is used for motility and has been shown to be critical for its virulence to corals. It is a versatile pathogen, impacting several marine invertebrates including Pocillopora damicornis corals, both the Pacific and Eastern Oyster's larvae and some vertebrates such as the rainbow trout. It is a bacterium of considerable interest given its direct contribution to temperature dependent coral bleaching as well as its impacts on aquaculture where it can contribute to significant mortalities in larval oyster hatcheries. There are several known virulent strains, which appear on both the Pacific and Atlantic Coasts of the United States. After its initial discovery some strains were incorrectly classified as Vibrio tubiashii including the RE22 and RE98 strains but were later reclassified as Vibrio coralliilyticus.
Pelobacter venetianus is a species of bacteria that degrade polyethylene glycol. It is strictly anaerobic, Gram-negative, and nonspore-forming.
Leuconostoc carnosum is a lactic acid bacterium; its type strain is NCFB 2776. Its genome has been sequenced. Its name derives from the fact that it was first isolated from chill-stored meats. Its significance is that it thrives in anaerobic environments with a temperature around 2 °C, thus has been known to spoil vacuum-packed meat, yet it is not pathogenic and certain strains of L. carnosum are known to produce bactericides known to inhibit or kill Listeria monocytogenes.
Helicobacter canadensis is a bacterium in the Helicobacteraceae family, Campylobacterales order, first isolated from humans with diarrhea. Its genome has been sequenced.
Geobacter lovleyi is a gram-negative metal-reducing and tetrachloroethene-dechlorinating proteobacterium. It has potential as a bioremediation organism, and is actively researched as such.
Treponema primitia is a bacterium, the first termite gut spirochete to be isolated, together with Treponema azotonutricium.
Sodalis is a genus of bacteria within the family Pectobacteriaceae. This genus contains several insect endosymbionts and also a free-living group. It is studied due to its potential use in the biological control of the tsetse fly. Sodalis is an important model for evolutionary biologists because of its nascent endosymbiosis with insects.
Geobacter psychrophilus is a Fe(III)-reducing bacterium. It is Gram-negative, slightly curved, rod-shaped and motile via means of monotrichous flagella. Its type strain is P35T.
Chloroflexus aggregans is a thermophilic, filamentous, phototrophic bacterium that forms dense cell aggregates. Its type strain is strain MD-66.
Opitutus terrae is an obligately anaerobic bacterium first isolated from rice paddy soil, hence its epithet. It is coccus-shaped and is motile by means of a flagellum. Its type strain is PB90-1T. Its genome has been sequenced.
Saccharomyces arboricolus is a species of ascomycetous yeast in first isolated from tree bark. Its type strain is H-6T.
Geobacter uraniireducens is a gram-negative, rod-shaped, anaerobic, chemolithotrophic, mesophilic, and motile bacterium from the genus of Geobacter. G. uraniireducens has been found to reduce iron and uranium in sediment and soil. It is being studied for use in bioremediation projects due to its ability to reduce uranium and arsenic.
Alison Buchan is the Carolyn Fite Professor at the University of Tennessee. She is known for her work on bacteria in natural environments, especially bacteria within the Roseobacter group. In 2022 she was named as a fellow of the American Academy of Microbiology.
References
- ↑ Schink, Bernhard (1984). "Fermentation of 2,3-butanediol by Pelobacter carbinolicus sp. nov. and Pelobacter propionicus sp. nov., and evidence for propionate formation from C2 compounds". Archives of Microbiology. 137 (1): 33–41. doi:10.1007/BF00425804. ISSN 0302-8933. S2CID 10262020.
- ↑ Aklujkar, Muktak; Haveman, Shelley A; DiDonato, Raymond; Chertkov, Olga; Han, Cliff S; Land, Miriam L; Brown, Peter; Lovley, Derek R (2012). "The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features". BMC Genomics. 13 (1): 690. doi: 10.1186/1471-2164-13-690 . ISSN 1471-2164. PMC 3543383 . PMID 23227809.
