Porphyromonas

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Porphyromonas
Porphyromonas gulae on TSA plate 02.jpg
Colonies of Porphyromonas gulae growing on a TSA plate
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Kingdom: Pseudomonadati
Phylum: Bacteroidota
Class: Bacteroidia
Order: Bacteroidales
Family: Porphyromonadaceae
Genus: Porphyromonas
Shah and Collins 1988 [1]
Type species
Porphyromonas asaccharolytica [1]
Species

P. asaccharolytica [1]
P. bennonis [1]
P. cangingivalis [1]
P. canoris [1]
P. catoniae [1]
P. circumdentaria [1]
P. crevioricanis [1]
P. endodontalis [1]
P. gingivalis [1]
P. gingivicanis [1]
P. gulae [1]
P. levii [1]
P. macacae [1]
P. pasteri [1]
P. pogonae [1]
P. somerae [1]
P. uenonis [1]

Contents

Synonyms [2]
  • OribaculumMoore and Moore 1994

Porphyromonas is a Gram-negative, non-spore-forming, obligately anaerobic and non-motile genus from the family Porphyromonadaceae. [3] [1] [2] [4] There were 16 different Porphyromonas species documented as of 2015, which reside in both animal and human reservoirs. [5] It was discovered more recently that Porphyromonas also exist in the environment, albeit to a lesser extent. [6] This genus is notably implicated in the modulation of oral cavity, respiratory tract, and gastrointestinal tract disease states. [5] It is suggested that Porphyromonas either operate as benign bacteria pertinent to host immunity or are potential pathobionts that opportunistically provoke diseased states when homeostasis is disrupted. [6] Despite its characterization not being fully elucidated due to sparse research, various studies report the prevalence of this genus at 58.7% in healthy states compared with 41.3% in diseased states. [6]

This genus was first reported in the oral cavity [5] and is found specifically in the salivary microbiome. [7] Porphyromonas are also commonly found in the microbiome of the human digestive tract, as shown by the Human Microbiome Project in general. [8]

Distribution of species

While overlap exists between humans and animals in the distribution of Porphyromonas species, some species are more prevalent in each. [5]

Humans

P. asaccharolytica, P. endodontalis, P. gingivalis, P. catoniae, P. pasteri, P. somerae, and P. uenonis [5]

Porphyromonas endodontalis in humans

Animals

P. cangingivalis, P. canoris, P. cansulsi, P. circumdentaria, P. crevioricanis, P. gingivicanis, P. salivosa, P. macacae, P. gulae, and P. levii [5] Porphyromonas genus is commonly found in healthy stallion semen <(https://doi.org/10.1016/j.anireprosci.2020.106568)>

Environment

Porphyromonas have been isolated from manmade and naturally occurring environments. Most of these species have been detected in manmade environments, including transportation systems, healthcare settings, and indoor facilities; Porphyromonas persist in naturally occurring environments such as air, soil, seawater, freshwater, agricultural sites, and alpine meadows to a lesser extent. Furthermore, waste-management sites are a pertinent source of environment-dwelling species. [6] Specific environmentally hosted strains have not been widely studied or identified.

Health impacts

Oral cavity

Gastrointestinal tract

Respiratory tract

Uterine tract

Other

Alterations in Porphyromonas abundance have also been associated with various cancers, autoimmune and neurodegenerative conditions, [6] vaginal diseases, rheumatoid arthritis, and Sjogren's syndrome. [5]

Detection methods

Porphyromonas is most commonly detected via utilization of 16s rRNA sequencing techniques. [16] [17]

References

  1. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 Parte, A.C. "Porphyromonas". LPSN .
  2. 1 2 "Porphyromonas". www.uniprot.org.
  3. Summanen, Paula; Finegold, Sydney M. (1 January 2015). "Porphyromonas". Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons, Ltd. pp. 1–14. doi:10.1002/9781118960608.gbm00246. ISBN   9781118960608.
  4. Parker, Charles Thomas; Wigley, Sarah; Garrity, George M (2009). Parker, Charles Thomas; Garrity, George M (eds.). "Nomenclature Abstract for Porphyromonas". The NamesforLife Abstracts. doi:10.1601/nm.8020.
  5. 1 2 3 4 5 6 7 Guilloux, Charles-Antoine; Lamoureux, Claudie; Beauruelle, Clémence; Héry-Arnaud, Geneviève (April 2021). "Porphyromonas: A neglected potential key genus in human microbiomes". Anaerobe. 68 102230. doi:10.1016/j.anaerobe.2020.102230. ISSN   1075-9964. PMID   32615270. S2CID   220329292.
  6. 1 2 3 4 5 Acuña-Amador, Luis; Barloy-Hubler, Frédérique (December 2020). "Porphyromonas spp. have an extensive host range in ill and healthy individuals and an unexpected environmental distribution: A systematic review and meta-analysis". Anaerobe. 66 102280. doi:10.1016/j.anaerobe.2020.102280. hdl: 10669/81718 . ISSN   1075-9964. PMID   33011277. S2CID   222169436.
  7. Wang, Kun; Lu, Wenxin; Tu, Qichao; Ge, Yichen; He, Jinzhi; Zhou, Yu; Gou, Yaping; Nostrand, Joy D Van; Qin, Yujia; Li, Jiyao; Zhou, Jizhong; Li, Yan; Xiao, Liying; Zhou, Xuedong (10 March 2016). "Preliminary analysis of salivary microbiome and their potential roles in oral lichen planus". Scientific Reports. 6 (1): 22943. Bibcode:2016NatSR...622943W. doi:10.1038/srep22943. PMC   4785528 . PMID   26961389.
  8. The Human Microbiome Project Consortium (June 2012). "Structure, function and diversity of the healthy human microbiome". Nature. 486 (7402): 207–214. Bibcode:2012Natur.486..207T. doi:10.1038/nature11234. ISSN   0028-0836. PMC   3564958 . PMID   22699609.
  9. 1 2 3 4 5 6 7 van Winkelhoff, A. J.; van Steenbergen, T. J.; de Graaff, J. (September 1992). "Porphyromonas (Bacteroides) endodontalis: its role in endodontal infections". Journal of Endodontics. 18 (9): 431–434. doi:10.1016/s0099-2399(06)80843-5. ISSN   0099-2399. PMID   9796510.
  10. Cao, H.; Qi, Z.; Jiang, H.; Zhao, J.; Liu, Z.; Tang, Z. (August 2012). "Detection of Porphyromonas endodontalis, Porphyromonas gingivalis and Prevotella intermedia in primary endodontic infections in a Chinese population". International Endodontic Journal. 45 (8): 773–781. doi:10.1111/j.1365-2591.2012.02035.x. ISSN   1365-2591. PMID   22429191.
  11. Mysak, Jaroslav; Podzimek, Stepan; Sommerova, Pavla; Lyuya-Mi, Yelena; Bartova, Jirina; Janatova, Tatjana; Prochazkova, Jarmila; Duskova, Jana (2014). "Porphyromonas gingivalis: Major Periodontopathic Pathogen Overview". Journal of Immunology Research. 2014: 476068. doi: 10.1155/2014/476068 . ISSN   2314-8861. PMC   3984870 . PMID   24741603.
  12. 1 2 van Winkelhoff, A. J.; van Steenbergen, T. J.; de Graaff, J. (September 1992). "Porphyromonas (Bacteroides) endodontalis: its role in endodontal infections". Journal of Endodontics. 18 (9): 431–434. doi:10.1016/s0099-2399(06)80843-5. ISSN   0099-2399. PMID   9796510.
  13. Ahn, J.; Sinha, R.; Pei, Z.; Dominianni, C.; Wu, J.; Shi, J.; Goedert, J. J.; Hayes, R. B.; Yang, L. (18 December 2013). "Human Gut Microbiome and Risk for Colorectal Cancer". J Natl Cancer Inst. 105 (24): 1907–1911. doi:10.1093/jnci/djt300. PMC   3866154 . PMID   24316595.
  14. Zhou, Yuhua; Lin, Feishen; Cui, Zelin; Zhang, Xiangrong; Hu, Chunmei; Shen, Tian; Chen, Chunyan; Zhang, Xia; Guo, Xiaokui (2015-05-22). "Correlation between Either Cupriavidus or Porphyromonas and Primary Pulmonary Tuberculosis Found by Analysing the Microbiota in Patients' Bronchoalveolar Lavage Fluid". PLOS ONE. 10 (5): e0124194. Bibcode:2015PLoSO..1024194Z. doi: 10.1371/journal.pone.0124194 . ISSN   1932-6203. PMC   4441454 . PMID   26000957.
  15. Galvão, Klibs N.; Bicalho, Rodrigo C.; Jeon, Soo Jin (December 2019). "Symposium review: The uterine microbiome associated with the development of uterine disease in dairy cows". Journal of Dairy Science. 102 (12): 11786–11797. doi: 10.3168/jds.2019-17106 . ISSN   0022-0302. PMID   31587913. S2CID   203848231.
  16. Gabarrini, G.; Chlebowicz, M.A.; Vega Quiroz, M.E.; Veloo, A.C.M.; Rossen, J.W.A.; Harmsen, H.J.M.; Laine, M.L.; van Dijl, J.M.; van Winkelhoff, A.J. (2018-01-03). "Conserved Citrullinating Exoenzymes inPorphyromonasSpecies". Journal of Dental Research. 97 (5): 556–562. doi:10.1177/0022034517747575. ISSN   0022-0345. PMID   29298553. S2CID   13878262.
  17. Paster, B J; Dewhirst, F E; Olsen, I; Fraser, G J (February 1994). "Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria". Journal of Bacteriology. 176 (3): 725–732. doi:10.1128/jb.176.3.725-732.1994. ISSN   0021-9193. PMC   205110 . PMID   8300528.

Further reading