Zygomycota, or zygote fungi, is a former division or phylum of the kingdom Fungi. The members are now part of two phyla the Mucoromycota and Zoopagomycota. Approximately 1060 species are known. They are mostly terrestrial in habitat, living in soil or on decaying plant or animal material. Some are parasites of plants, insects, and small animals, while others form symbiotic relationships with plants. Zygomycete hyphae may be coenocytic, forming septa only where gametes are formed or to wall off dead hyphae. Zygomycota is no longer recognised as it was not believed to be truly monophyletic.
Coliform bacteria are defined as Rod shaped Gram-negative non-spore forming and motile or non-motile bacteria which can ferment lactose with the production of acid and gas when incubated at 35–37 °C. Due to the limited ability of certain coliform bacteria to ferment lactose, the definition has changed to bacteria containing the enzyme β-galactosidase. They are a commonly used indicator of sanitary quality of foods and water. Coliforms can be found in the aquatic environment, in soil and on vegetation; they are universally present in large numbers in the feces of warm-blooded animals. While coliforms themselves are not normally causes of serious illness, they are easy to culture, and their presence is used to indicate that other pathogenic organisms of fecal origin may be present. Such pathogens include disease-causing bacteria, viruses, or protozoa and many multicellular parasites. Coliform procedures are performed in aerobic or anaerobic conditions.
A growth medium or culture medium is a solid, liquid, or semi-solid designed to support the growth of a population of microorganisms or cells via the process of cell proliferation or small plants like the moss Physcomitrella patens. Different types of media are used for growing different types of cells.
Leuconostoc mesenteroides is a species of lactic acid bacteria associated with fermentation, under conditions of salinity and low temperatures. In some cases of vegetable and food storage, it was associated with pathogenicity. L. mesenteroides is approximately 0.5-0.7 µm in diameter and has a length of 0.7-1.2 µm, producing small grayish colonies that are typically less than 1.0 mm in diameter. It is facultatively anaerobic, Gram-positive, non-motile, non-sporogenous, and spherical. It often forms lenticular coccoid cells in pairs and chains, however, it can occasionally forms short rods with rounded ends in long chains, as its shape can differ depending on what media the species is grown on. L. mesenteroides grows best at 30°C, but can survive in temperatures ranging from 10°C to 30°C. Its optimum pH is 5.5, but can still show growth in pH of 4.5-7.0.
Saprotrophic nutrition or lysotrophic nutrition is a process of chemoheterotrophic extracellular digestion involved in the processing of decayed organic matter. It occurs in saprotrophs, and is most often associated with fungi and soil bacteria. Saprotrophic microscopic fungi are sometimes called saprobes; saprotrophic plants or bacterial flora are called saprophytes, although it is now believed that all plants previously thought to be saprotrophic are in fact parasites of microscopic fungi or other plants. The process is most often facilitated through the active transport of such materials through endocytosis within the internal mycelium and its constituent hyphae.
The Triple Sugar Iron (TSI) test is a microbiological test roughly named for its ability to test a microorganism's ability to ferment sugars and to produce hydrogen sulfide. It is often used to differentiate enteric bacteria including Salmonella and Shigella.
Conidiobolus coronatus is a saprotrophic fungus, first described by Costantin in 1897 as Boudierella coronata. Though this fungus has also been known by the name Entomophthora coronata, the correct name is Conidiobolus coronatus. C. coronatus is able to infect humans and animals, and the first human infection with C. coronatus was reported in Jamaica in 1965.
Geobacillus thermoglucosidasius is a thermophilic gram-positive bacterium, and a member of the Firmicutes phylum. It was first isolated from soil in Japan in 1983.
Fimbriimonas ginsengisoli is a Gram-negative bacterium and also the first representative of the new class Fimbriimonadia within the phylum Armatimonadota. The Armatimonadota were previously known as candidate phylum OP10. OP10 was composed solely of environmental 16S rRNA gene clone sequences prior to F. ginsengisoli's relative, Armatimonas rosea's discovery.
Paenibacillus tylopili is a soil-dwelling, Gram-positive, rod-shaped bacterium. Described as new to science in 2008, it was found in the mycorhizosphere of the bolete fungus Tylopilus felleus.
Victivallis vadensis is a Gram-negative, coccus-shaped, bacteria found in the human digestive tract. It measures approximately 0.5-1.3 micrometers in diameter, is non-motile and chemoorganotrophic, and does not form spores. Victivallis vadensis is strictly anaerobic, as are 90 percent of the bacteria in the human gastrointestinal system.
Granada medium is a selective and differential culture medium designed to selectively isolate Streptococcus agalactiae and differentiate it from other microorganisms. Granada Medium was developed by Dr. Manuel Rosa-Fraile et al. at the Service of Microbiology in the Hospital Virgen de las Nieves in Granada (Spain).
Rhizopus oryzae is a filamentous heterothallic microfungus that occurs as a saprotroph in soil, dung, and rotting vegetation. This species is very similar to Rhizopus stolonifer, but it can be distinguished by its smaller sporangia and air-dispersed sporangiospores. It differs from R. oligosporus and R. microsporus by its larger columellae and sporangiospores. R. oryzae is used economically in the production of the enzymes, glucoamylase and lipase, in the synthesis of organic acids, and in various fermented foods. The many strains of R. oryzae produce a wide range of enzymes such as carbohydrate digesting enzymes and polymers along with a number of organic acids, ethanol and esters giving it useful properties within the food industries, bio-diesel production, and pharmaceutical industries. It is also an opportunistic pathogen of humans causing mucormycosis.
In microbiology, the term isolation refers to the separation of a strain from a natural, mixed population of living microbes, as present in the environment, for example in water or soil flora, or from living beings with skin flora, oral flora or gut flora, in order to identify the microbe(s) of interest. Historically, the laboratory techniques of isolation first developed in the field of bacteriology and parasitology, before those in virology during the 20th century.
Nocardiopsis sinuspersici is a species of bacteria that is an aerobic, Gram positive, alkalohalophilic, actinomycete. While species from the genus of Nocardiopsis have been found in a variety of environments, primarily soils, strain N. sinuspersici sp. nov was isolated from sandy rhizospheric soils from Sarbandar and Khoramshahr in Iran.
Candida tropicalis is a species of yeast in the genus Candida. It is a common pathogen in neutropenic hosts, in whom it may spread through the bloodstream to peripheral organs. For invasive disease, treatments include amphotericin B, echinocandins, or extended-spectrum triazole antifungals.
Aspergillus wentii is an asexual, filamentous, endosymbiotic fungus belonging to the mold genus, Aspergillus. It is a common soil fungus with a cosmopolitan distribution, although it is primarily found in subtropical regions. Found on a variety of organic materials, A. wentii is known to colonize corn, cereals, moist grains, peanuts and other ground nut crops. It is also used in the manufacture of biodiesel from lipids and is known for its ability to produce enzymes used in the food industry.
Tumebacillus flagellatus is a species of Gram positive, aerobic, bacterium. The cells are rod-shaped, motile, and form spores. It was first isolated from wastewater from a cassava processing plant in Guangxi, China. The species was first described in 2013, and the name refers to the flagella found in the cells. T. flagellatus was the third species of Tumebacillus to be discovered, but was the first found to be motile. T. flagellatus was found during a survey for bacteria that were able to hydrolyze pullulan or starch.
Arthrobacter bussei is a pink-coloured, aerobic, coccus-shaped, Gram-stain-positive, oxidase-positive and catalase-positive bacterium isolated from cheese made of cow´s milk. A. bussei is non-motile and does not form spores. Rod–coccus life cycle is not observed. Cells are 1.1–1.5 µm in diameter. On trypticase soy agar it forms pink-coloured, raised and round colonies, which are 1.0 mm in diameter after 5 days at 30 °C The genome of the strain A. bussei KR32T has been fully sequenced.
Naganishia albidosimilis is a species of fungus in the family Filobasidiaceae. It is currently only known from its yeast state, isolated from soil in Antarctica.
