Alexander MacKerell

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  1. fa-admin (2022-12-14). "Alex MacKerell, PhD, SilcsBio Co-founder & CSO, Co-Leads Study on Use of SILCS Technology to Improve Lung Disease Treatments - SilcsBio | Computer-Aided Drug Design". SilcsBio. Retrieved 2023-12-03.
  2. "2022 Recipients". ACS. Retrieved Dec 2, 2023.
  3. "News Center » MacKerell Honored with American Chemical Society Award" . Retrieved 2024-07-10.
  4. 1 2 3 MacKerell, Alex (Feb 7, 2024). "Curriculum Vitae of Alexander D. MacKerell, Jr" (PDF). MacKerell Lab website. Retrieved Feb 7, 2024.
  5. MacKerell, A. D.; Bashford, D.; Bellott, M.; Dunbrack, R. L.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; Joseph-Mccarthy, D.; Kuchnir, L.; Kuczera, K.; Lau, F. T. K.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D. T.; Prodhom, B.; Reiher, W. E.; Roux, B.; Schlenkrich, M.; Smith, J. C.; Stote, R.; Straub, J.; Watanabe, M.; Wiórkiewicz-Kuczera, J.; Yin, D.; Karplus, M. (1998). "All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins" . The Journal of Physical Chemistry B. 102 (18): 3586–3616. doi:10.1021/jp973084f. PMID   24889800.
  6. "Alex MacKerell". faculty.rx.umaryland.edu. Retrieved 2024-01-04.
  7. Wu, Zhenhui; Chen, Shupeng; Wang, Yihao; Li, Fangyang; Xu, Huanhua; Li, Maoxing; Zeng, Yingjian; Wu, Zhenfeng; Gao, Yue (2024-06-01). "Current perspectives and trend of computer-aided drug design: a review and bibliometric analysis". International Journal of Surgery (London, England). 110 (6): 3848–3878. doi:10.1097/JS9.0000000000001289. ISSN   1743-9159. PMC   11175770 . PMID   38502850.
  8. Episode 19 - Alex MacKerell: Simple physics, missing experimental data, and model compatibility, 2024-09-10, retrieved 2025-06-26
  9. Klauda, Jeffery B.; Venable, Richard M.; Freites, J. Alfredo; O’Connor, Joseph W.; Tobias, Douglas J.; Mondragon-Ramirez, Carlos; Vorobyov, Igor; MacKerell, Alexander D.; Pastor, Richard W. (2010-06-17). "Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types". The Journal of Physical Chemistry B. 114 (23): 7830–7843. doi:10.1021/jp101759q. ISSN   1520-6106. PMC   2922408 . PMID   20496934.
  10. MacKerell, Alexander D.; Banavali, Nilesh; Foloppe, Nicolas (2000). "Development and current status of the CHARMM force field for nucleic acids" . Biopolymers. 56 (4): 257–265. doi:10.1002/1097-0282(2000)56:4<257::AID-BIP10029>3.0.CO;2-W. ISSN   0006-3525. PMID   11754339. S2CID   19502363.
  11. Guvench, Olgun; Mallajosyula, Sairam S.; Raman, E. Prabhu; Hatcher, Elizabeth; Vanommeslaeghe, Kenno; Foster, Theresa J.; Jamison, Francis W.; MacKerell, Alexander D. (2011-10-11). "CHARMM Additive All-Atom Force Field for Carbohydrate Derivatives and Its Utility in Polysaccharide and Carbohydrate–Protein Modeling". Journal of Chemical Theory and Computation. 7 (10): 3162–3180. doi:10.1021/ct200328p. ISSN   1549-9618. PMC   3224046 . PMID   22125473.
  12. Vanommeslaeghe, K.; Hatcher, E.; Acharya, C.; Kundu, S.; Zhong, S.; Shim, J.; Darian, E.; Guvench, O.; Lopes, P.; Vorobyov, I.; Mackerell, A. D. (March 2010). "CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields". Journal of Computational Chemistry. 31 (4): 671–690. doi:10.1002/jcc.21367. ISSN   0192-8651. PMC   2888302 . PMID   19575467.
  13. "A simple polarizable model of water based on classical Drude oscillators". pubs.aip.org. Retrieved 2023-12-03.
  14. Vanommeslaeghe, K.; MacKerell, A. D. (2012-12-21). "Automation of the CHARMM General Force Field (CGenFF) I: Bond Perception and Atom Typing". Journal of Chemical Information and Modeling. 52 (12): 3144–3154. doi:10.1021/ci300363c. ISSN   1549-9596. PMC   3528824 . PMID   23146088.
  15. Vanommeslaeghe, K.; Raman, E. Prabhu; MacKerell, A. D. (2012-12-21). "Automation of the CHARMM General Force Field (CGenFF) II: Assignment of Bonded Parameters and Partial Atomic Charges". Journal of Chemical Information and Modeling. 52 (12): 3155–3168. doi:10.1021/ci3003649. ISSN   1549-9596. PMC   3528813 . PMID   23145473.
  16. Kumar, Anmol; Yoluk, Ozge; MacKerell, Alexander D. (2020-04-05). "FFParam: Standalone package for CHARMM additive and Drude polarizable force field parametrization of small molecules". Journal of Computational Chemistry. 41 (9): 958–970. doi:10.1002/jcc.26138. ISSN   0192-8651. PMC   7323454 . PMID   31886576.
  17. Kumar, Anmol; Pandey, Poonam; Chatterjee, Payal; MacKerell, Alexander D. (2022-03-08). "Deep Neural Network Model to Predict the Electrostatic Parameters in the Polarizable Classical Drude Oscillator Force Field". Journal of Chemical Theory and Computation. 18 (3): 1711–1725. doi:10.1021/acs.jctc.1c01166. ISSN   1549-9618. PMC   8904317 . PMID   35148088.
  18. Jo, Sunhwan; Cheng, Xi; Lee, Jumin; Kim, Seonghoon; Park, Sang-Jun; Patel, Dhilon S.; Beaven, Andrew H.; Lee, Kyu Il; Rui, Huan; Park, Soohyung; Lee, Hui Sun; Roux, Benoît; MacKerell, Alexander D.; Klauda, Jeffrey B.; Qi, Yifei (2017-06-05). "CHARMM-GUI 10 years for biomolecular modeling and simulation". Journal of Computational Chemistry. 38 (15): 1114–1124. doi:10.1002/jcc.24660. ISSN   0192-8651. PMC   5403596 . PMID   27862047.
  19. "News Center » First Grollman-Glick Professor Named" . Retrieved 2023-12-03.
  20. "Endowed Chairs". www.pharmacy.umaryland.edu. Retrieved 2023-12-03.
  21. 1 2 "2022 Recipients". ACS. Retrieved Dec 2, 2023.
  22. "Editorial board". Journal of Computational Chemistry. Retrieved Dec 3, 2023.
  23. "PLOS Computational Biology". journals.plos.org. Retrieved 2023-12-03.
  24. "Editorial board". Proteins: Structure, Function, & Bioinformatics.
  25. "News Center » MacKerell selected "2006 Maryland Chemist of the Year"" . Retrieved 2023-12-03.
  26. "News Center » 2012 Researcher of the Year" . Retrieved 2023-12-03.
  27. "The Goodman Lecture". Oregon Health and Safety University. Retrieved Dec 2, 2023.
  28. "AWARDS". ISQBP. Retrieved Dec 2, 2023.
  29. "Biophysical Society Announces 2026 Society Fellows". The Biophysical Society. Retrieved 2025-11-07.


Alexander MacKerell
NationalityAmerican
TitleGrollman-Glick Professor of Pharmaceutical Sciences
Academic background
Alma mater Rowan College of South Jersey
University of Hawaiʻi at Mānoa
Rutgers University
Doctoral advisor Regina Pietruszko
Other advisorsRudolph Rigler
Martin Karplus