Bacillus is a genus of Gram-positive, rod-shaped bacteria, a member of the phylum Bacillota, with 266 named species. The term is also used to describe the shape (rod) of other so-shaped bacteria; and the plural Bacilli is the name of the class of bacteria to which this genus belongs. Bacillus species can be either obligate aerobes which are dependent on oxygen, or facultative anaerobes which can survive in the absence of oxygen. Cultured Bacillus species test positive for the enzyme catalase if oxygen has been used or is present.
Proteus is a genus of Gram-negative bacteria. It is a rod shaped, aerobic and motile bacteria, which is able to migrate across surfaces due its “swarming” characteristic in temperatures between 20 and 37 °C. Their size generally ranges from 0.4 to 0.8 μm in diameter and 1.0–3.0 μm in length. They tend to have an ammonia smell. Proteus bacilli are widely distributed in nature as saprophytes, being found in decomposing animal matter, sewage, manure soil, the mammalian intestine, and human and animal feces. They are opportunistic pathogens, commonly responsible for urinary and septic infections, often nosocomial.
Allantoin is a chemical compound with formula C4H6N4O3. It is also called 5-ureidohydantoin or glyoxyldiureide. It is a diureide of glyoxylic acid. Allantoin is a major metabolic intermediate in most organisms including animals, plants and bacteria, though not humans. It is produced from uric acid, which itself is a degradation product of nucleic acids, by action of urate oxidase (uricase). Allantoin also occurs as a natural mineral compound (IMA symbol Aan).
Proteus mirabilis is a Gram-negative, facultatively anaerobic, rod-shaped bacterium. It shows swarming motility and urease activity. P. mirabilis causes 90% of all Proteus infections in humans. It is widely distributed in soil and water. Proteus mirabilis can migrate across the surface of solid media or devices using a type of cooperative group motility called swarming. Proteus mirabilis is most frequently associated with infections of the urinary tract, especially in complicated or catheter-associated urinary tract infections.
Nitrosomonas europaea is a Gram-negative obligate chemolithoautotroph that can derive all its energy and reductant for growth from the oxidation of ammonia to nitrite and lives in several places such as soil, sewage, freshwater, the walls of buildings and on the surface of monuments especially in polluted areas where the air contains high levels of nitrogen compounds.
Nitrosomonas is a genus of Gram-negative bacteria, belonging to the Betaproteobacteria. It is one of the five genera of ammonia-oxidizing bacteria and, as an obligate chemolithoautotroph, uses ammonia as an energy source and carbon dioxide as a carbon source in the presence of oxygen. Nitrosomonas are important in the global biogeochemical nitrogen cycle, since they increase the bioavailability of nitrogen to plants and in the denitrification, which is important for the release of nitrous oxide, a powerful greenhouse gas. This microbe is photophobic, and usually generate a biofilm matrix, or form clumps with other microbes, to avoid light. Nitrosomonas can be divided into six lineages: the first one includes the species Nitrosomonas europea, Nitrosomonas eutropha, Nitrosomonas halophila, and Nitrosomonas mobilis. The second lineage presents the species Nitrosomonas communis, N. sp. I and N. sp. II. The third lineage includes only Nitrosomonas nitrosa. The fourth lineage includes the species Nitrosomonas ureae and Nitrosomonas oligotropha. The fifth and sixth lineages include the species Nitrosomonas marina, N. sp. III, Nitrosomonas estuarii, and Nitrosomonas cryotolerans.
Alcaligenes is a genus of Gram-negative, aerobic, rod-shaped bacteria in the order of Burkholderiales.
Priestia megaterium is a rod-like, Gram-positive, mainly aerobic, spore forming bacterium found in widely diverse habitats. It has a cell length up to 100 μm and a diameter of 0.1 μm, which is quite large for bacteria. The cells often occur in pairs and chains, where the cells are joined by polysaccharides on the cell walls.
Paucimonas lemoignei, formerly [Pseudomonas lemoignei], is a Gram-negative soil bacterium. It is aerobic, motile, and rod-shaped.
Marinobacter hydrocarbonoclasticus is a species of bacteria found in sea water which are able to degrade hydrocarbons. The cells are rod-shaped and motile by means of a single polar flagellum.
Allantoicase is an enzyme (EC 3.5.3.4) that in humans is encoded by the ALLC gene. Allantoicase catalyzes the chemical reaction
Sporosarcina pasteurii formerly known as Bacillus pasteurii from older taxonomies, is a gram positive bacterium with the ability to precipitate calcite and solidify sand given a calcium source and urea; through the process of microbiologically induced calcite precipitation (MICP) or biological cementation. S. pasteurii has been proposed to be used as an ecologically sound biological construction material. Researchers studied the bacteria in conjunction with plastic and hard mineral; forming a material stronger than bone. It is a commonly used for MICP since it is non-pathogenic and is able to produce high amounts of the enzyme urease which hydrolyzes urea to carbonate and ammonia.
Geobacillus thermoglucosidasius is a thermophilic gram-positive bacterium, and a member of the Bacillota phylum. It was first isolated from soil in Japan in 1983.
Amphibacillus xylanus is a gram-positive-spore forming bacterium with cells 0.3 μm to 0.5 μm in diameter and 0.9 μm to 1.9 μm in length. A. xylanus is a facultative anaerobic organism which can grow in several different environments. Its success in a multitude of environments stems from multiple metabolic pathways, each with high ATP yields. It is flagellated and motile. It grows best at pH 8.0-10.0 but not at pH 7.0. It is catalase and oxidase negative. This helps to explain better the unique method of metabolism on which the organism relies.
Lysinibacillus fusiformis is a gram-positive, rod-shaped bacterium of the genus Lysinibacillus. Scientists have yet to completely characterize this microbe's pathogenic nature. Though little is known about this organism, several genome sequencing projects for various strains of L. fusiformis are currently underway.
Bacillus boroniphilus is a species of highly boron-tolerant bacterium, hence its name. It is Gram-positive, motile, and rod-shaped, with type strain T-15ZT. Its genome has been sequenced.
Symbiobacterium thermophilum is a symbiotic thermophile that depends on co-culture with a Bacillus strain for growth. It is Gram-negative and tryptophanase-positive, with type strain T(T). It is the type species of its genus. Symbiobacterium is related to the Gram-positive Bacillota and Actinomycetota, but belongs to a lineage that is distinct from both.S. thermophilum has a bacillus shaped cell structure with no flagella. This bacterium is located throughout the environment in soils and fertilizers.
Bilophila wadsworthia is a Gram-negative, obligately anaerobic, catalase-positive, bile-resistant, and asaccharolytic bacillus. Approximately 75% of B. wadsworthia strains are urease positive. B. wadsworthia is linked to various diseases and is not well known due to frequent misidentification of the bacteria, and the National Center for Biotechnology Information is including it the phylum of Proteobacteria. The two unique characteristics of B. wadsworthia are the utilisation of the sulfated amino acid taurine in the production of hydrogen sulfide and the rapid catalase reaction. This bacterium is susceptible to the β-lactam antibiotics imipenem, cefoxitin, and ticarcillin.
Alkalihalobacillus is a genus of gram-positive or gram-variable rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Alkalihalobacillus alcalophilus.
Metabacillus is a genus of rod-shaped bacteria exhibiting Gram-positive or Gram-variable staining in the family Bacillaceae within the order Bacillales. The type species for this genus is Metabacillus fastidiosus.
