Discodermia calyx

Last updated

Discodermia calyx
Scientific classification Red Pencil Icon.png
Kingdom: Animalia
Phylum: Porifera
Class: Demospongiae
Order: Tetractinellida
Family: Theonellidae
Genus: Discodermia
Species:
D. calyx
Binomial name
Discodermia calyx
Döderlein, 1884
Synonyms [1]
  • Theonella calyx(Döderlein, 1884)

Discodermia calyx is a species of bowl-shaped sponge that is found in shallow waters in central and southern Japan. [2] The species is distributed by the central Kuroshio current and is therefore localized along this current. Like many other sponges, D. calyx are very porous. They use the pores in their outer walls to draw in water which they then expel, retaining the nutrients dissolved in the water to nourish themselves. To keep water flowing in and out, the flagella that line their pores beat in either direction.

Contents

The toxin calyculin A, used in medical research, can be extracted from this species.

Taxonomy

Discodermia calyx was originally described by Ludwig Döderlein in 1884. It is a demosponge in the order Tetractinellida and family Theonellidae. [3] D. calyx has no colloquial name, as it is known primarily in scientific and medicinal contexts.

Use in research

Discodermia calyx is one of a few sponges that contain the molecule known as calyculin A. This well-studied toxin was discovered originally in D. calyx. When it was first studied it was discovered to be a phosphatase inhibitor, it stops an enzyme that dephosphorylates proteins within the cell. Calyculin A was studied in an experiment that used breast cancer cells. The toxin extracted from this primitive species enhanced the phosphorylation of cyclin D1. This caused the degradation of cyclin D1, which leads to arrest in cell cycle progression in the breast cancer cells. This, among other studies established calyculin as a phosphatase inhibitor. [4] This toxin, and therefore this species, among others with similar toxins, became increasingly studied and important in medicine, particularly relating to chemotherapy. In a later study, scientist concluded that the calyculin A, from D. calyx, also blocks calcium influx by blocking non-selective ion channels in the cell. [5] Later research looked into D. calyx as a species to look at the natural mechanisms that can be used to regulate the toxicity of calyculin A. Scientists found regulation through phosphorylation and dephosphorylation. [2] These among other studies focus on regulation of the toxin as a characteristic of the sponge Discodermia calyx because of its implications in the fight to cure cancer.

Related Research Articles

<span class="mw-page-title-main">Cell cycle</span> Series of events and stages that result in cell division

The cell cycle, or cell-division cycle, is the series of events that take place in a cell that cause it to divide into two daughter cells. These events include the duplication of its DNA and some of its organelles, and subsequently the partitioning of its cytoplasm, chromosomes and other components into two daughter cells in a process called cell division.

<span class="mw-page-title-main">Telophase</span> Final stage of a cell division for eukaryotic cells both in mitosis and meiosis

Telophase is the final stage in both meiosis and mitosis in a eukaryotic cell. During telophase, the effects of prophase and prometaphase are reversed. As chromosomes reach the cell poles, a nuclear envelope is re-assembled around each set of chromatids, the nucleoli reappear, and chromosomes begin to decondense back into the expanded chromatin that is present during interphase. The mitotic spindle is disassembled and remaining spindle microtubules are depolymerized. Telophase accounts for approximately 2% of the cell cycle's duration.

<span class="mw-page-title-main">Cyclin-dependent kinase</span> Class of enzymes

Cyclin-dependent kinases (CDKs) are the families of protein kinases first discovered for their role in regulating the cell cycle. They are also involved in regulating transcription, mRNA processing, and the differentiation of nerve cells. They are present in all known eukaryotes, and their regulatory function in the cell cycle has been evolutionarily conserved. In fact, yeast cells can proliferate normally when their CDK gene has been replaced with the homologous human gene. CDKs are relatively small proteins, with molecular weights ranging from 34 to 40 kDa, and contain little more than the kinase domain. By definition, a CDK binds a regulatory protein called a cyclin. Without cyclin, CDK has little kinase activity; only the cyclin-CDK complex is an active kinase but its activity can be typically further modulated by phosphorylation and other binding proteins, like p27. CDKs phosphorylate their substrates on serines and threonines, so they are serine-threonine kinases. The consensus sequence for the phosphorylation site in the amino acid sequence of a CDK substrate is [S/T*]PX[K/R], where S/T* is the phosphorylated serine or threonine, P is proline, X is any amino acid, K is lysine, and R is arginine.

<span class="mw-page-title-main">Restriction point</span> Animal cell cycle checkpoint

The restriction point (R), also known as the Start or G1/S checkpoint, is a cell cycle checkpoint in the G1 phase of the animal cell cycle at which the cell becomes "committed" to the cell cycle, and after which extracellular signals are no longer required to stimulate proliferation. The defining biochemical feature of the restriction point is the activation of G1/S- and S-phase cyclin-CDK complexes, which in turn phosphorylate proteins that initiate DNA replication, centrosome duplication, and other early cell cycle events. It is one of three main cell cycle checkpoints, the other two being the G2-M DNA damage checkpoint and the spindle checkpoint.

Okadaic acid, C44H68O13, is a toxin produced by several species of dinoflagellates, and is known to accumulate in both marine sponges and shellfish. One of the primary causes of diarrhetic shellfish poisoning, okadaic acid is a potent inhibitor of specific protein phosphatases and is known to have a variety of negative effects on cells. A polyketide, polyether derivative of a C38 fatty acid, okadaic acid and other members of its family have shined light upon many biological processes both with respect to dinoflagellete polyketide synthesis as well as the role of protein phosphatases in cell growth.

<span class="mw-page-title-main">Cell cycle checkpoint</span> Control mechanism in the eukaryotic cell cycle

Cell cycle checkpoints are control mechanisms in the eukaryotic cell cycle which ensure its proper progression. Each checkpoint serves as a potential termination point along the cell cycle, during which the conditions of the cell are assessed, with progression through the various phases of the cell cycle occurring only when favorable conditions are met. There are many checkpoints in the cell cycle, but the three major ones are: the G1 checkpoint, also known as the Start or restriction checkpoint or Major Checkpoint; the G2/M checkpoint; and the metaphase-to-anaphase transition, also known as the spindle checkpoint. Progression through these checkpoints is largely determined by the activation of cyclin-dependent kinases by regulatory protein subunits called cyclins, different forms of which are produced at each stage of the cell cycle to control the specific events that occur therein.

<span class="mw-page-title-main">Cyclin E</span> Member of the cyclin family

Cyclin E is a member of the cyclin family.

<span class="mw-page-title-main">Calyculin</span> Chemical compound

Calyculins are natural products originally isolated from the marine sponge Discodermia calyx. Calyculins have proven to be strong serine/threonine protein phosphatase inhibitors and based on this property, calyculins might be potential tumor-promoting agents.

<span class="mw-page-title-main">Cyclin-dependent kinase 4</span> Human protein

Cyclin-dependent kinase 4 also known as cell division protein kinase 4 is an enzyme that in humans is encoded by the CDK4 gene. CDK4 is a member of the cyclin-dependent kinase family.

<span class="mw-page-title-main">Cyclin-dependent kinase 6</span> Protein-coding gene in the species Homo sapiens

Cell division protein kinase 6 (CDK6) is an enzyme encoded by the CDK6 gene. It is regulated by cyclins, more specifically by Cyclin D proteins and Cyclin-dependent kinase inhibitor proteins. The protein encoded by this gene is a member of the cyclin-dependent kinase, (CDK) family, which includes CDK4. CDK family members are highly similar to the gene products of Saccharomyces cerevisiae cdc28, and Schizosaccharomyces pombe cdc2, and are known to be important regulators of cell cycle progression in the point of regulation named R or restriction point.

<span class="mw-page-title-main">CDKN1B</span> Protein-coding gene in the species Homo sapiens

Cyclin-dependent kinase inhibitor 1B (p27Kip1) is an enzyme inhibitor that in humans is encoded by the CDKN1B gene. It encodes a protein which belongs to the Cip/Kip family of cyclin dependent kinase (Cdk) inhibitor proteins. The encoded protein binds to and prevents the activation of cyclin E-CDK2 or cyclin D-CDK4 complexes, and thus controls the cell cycle progression at G1. It is often referred to as a cell cycle inhibitor protein because its major function is to stop or slow down the cell division cycle.

<span class="mw-page-title-main">SKP2</span> Protein-coding gene in the species Homo sapiens

S-phase kinase-associated protein 2 is an enzyme that in humans is encoded by the SKP2 gene.

<span class="mw-page-title-main">Cyclin B1</span> Protein-coding gene in the species Homo sapiens

G2/mitotic-specific cyclin-B1 is a protein that in humans is encoded by the CCNB1 gene.

<span class="mw-page-title-main">CDC25A</span> Protein-coding gene in the species Homo sapiens

M-phase inducer phosphatase 1 also known as dual specificity phosphatase Cdc25A is a protein that in humans is encoded by the cell division cycle 25 homolog A (CDC25A) gene.

<span class="mw-page-title-main">KCNB1</span> Protein-coding gene in the species Homo sapiens

Potassium voltage-gated channel, Shab-related subfamily, member 1, also known as KCNB1 or Kv2.1, is a protein that, in humans, is encoded by the KCNB1 gene.

<span class="mw-page-title-main">PPP1R2</span> Protein-coding gene in the species Homo sapiens

Protein phosphatase inhibitor 2 is an enzyme that in humans is encoded by the PPP1R2 gene.

<span class="mw-page-title-main">LMTK2</span> Protein-coding gene in the species Homo sapiens

Serine/threonine-protein kinase LMTK2 also known as Lemur tyrosine kinase 2 (LMTK2) is an enzyme that in humans is encoded by the LMTK2 gene.

The Akt signaling pathway or PI3K-Akt signaling pathway is a signal transduction pathway that promotes survival and growth in response to extracellular signals. Key proteins involved are PI3K and Akt.

A series of biochemical switches control transitions between and within the various phases of the cell cycle. The cell cycle is a series of complex, ordered, sequential events that control how a single cell divides into two cells, and involves several different phases. The phases include the G1 and G2 phases, DNA replication or S phase, and the actual process of cell division, mitosis or M phase. During the M phase, the chromosomes separate and cytokinesis occurs.

Calcium plays a crucial role in regulating the events of cellular division. Calcium acts both to modulate intracellular signaling as a secondary messenger and to facilitate structural changes as cells progress through division. Exquisite control of intracellular calcium dynamics are required, as calcium appears to play a role at multiple cell cycle checkpoints.

References

  1. "Discodermia calyx". Global Biodiversity Information Facility . Retrieved 13 June 2021.
  2. 1 2 Wakimoto, Toshiyuki; Egami, Yoko; Nakashima, Yu; Wakimoto, Yukihiko; Mori, Takahiro; Awakawa, Takayoshi; Ito, Takuya; Kenmoku, Hiromichi; Asakawa, Yoshinori; Piel, Jörn; Abe, Ikuro (2014). "Calyculin biogenesis from a pyrophosphate protoxin produced by a sponge symbiont". Nature Chemical Biology. 10 (8): 648–55. doi:10.1038/nchembio.1573. PMID   24974231.
  3. "Discodermia calyx". WoRMS. World Register of Marine Species . Retrieved 13 June 2021.
  4. Edelson, Jessica R.; Brautigan, David L. (24 January 2011). "The Discodermia calyx Toxin Calyculin A Enhances Cyclin D1 Phosphorylation and Degradation, and Arrests Cell Cycle Progression in Human Breast Cancer Cells". Toxins. 3 (1): 105–119. doi: 10.3390/toxins3010105 . PMC   3210456 . PMID   22069692.
  5. Holy, Maja; Brautigan, David L. (22 October 2012). "Calyculin A from Discodermia calyx is a Dual Action Toxin that Blocks Calcium Influx and Inhibits Protein Ser/Thr Phosphatases". Toxins. 4 (10): 940–954. doi: 10.3390/toxins4100940 . PMC   3496997 . PMID   23162706.