| Garlic common latent virus | |
|---|---|
Virus classification  | |
| (unranked): | Virus |
| Realm: | Riboviria |
| Kingdom: | Orthornavirae |
| Phylum: | Kitrinoviricota |
| Class: | Alsuviricetes |
| Order: | Tymovirales |
| Family: | Betaflexiviridae |
| Genus: | Carlavirus |
| Species: | Garlic common latent virus |
Garlic common latent virus (GarCLV) is a plant virus member of the genus Carlavirus that has been found infecting garlic globally. [1] [2] Detection of the virus in leek and onion has also been reported. [3] [4]
GarCLV main transmission is through propagation material. [5] As a result, it is often widespread among garlic crop. The virus single infection in garlic is usually symptomless, but in mixed infections with leek yellow stripe virus (LYSV, Potyvirus ) or onion yellow dwarf virus (OYDV, Potyvirus ) could form ‘garlic viral complex’ which increases severity of the other viruses infection. [6] Other Allium spp. such as Allium caeruleum, Allium cristophii, Allium cyathophorum, Allium nutans, Allium schoenoprasum, Allium scorodoprasum, Allium senescens subsp. montanum, and Allium sphaerocephalon had also been reported to be infected by GarCLV. [7]
The virus complete genome, excluding poly-(A) tail, is 8,353 nt long, and contains six open reading frame (ORFs). [8] ORFs 2, 3, 4 are triple gene block (TGB) which encodes movement protein, while ORF5 is the viral coat protein (CP) encoding sequence. [9]
Earlier phylogenetic analyses based on capsid (CP) gene suggested that global GarCLV isolates were highly similar and can be divided into two major groups only. [1] However, the latest Phylogenetic trees constructed using complete nucleotide sequences of each of TGB and CP gene clustered global isolates available in NCBI GenBank into three major clades. Isolates in the third group have high genetic variability among themselves and to isolates in the two other groups, and also seems to be more rarely found in the nature. The subsequent population study suggested that both genes were under negative selection pressure, with pressure on CP were more intense than on TGB. As consequences, TGB gene has higher genetic variations than CP gene. The high variations on TGB gene sequences probably reduced vitality of some isolates, especially those belong to highly variable Clade 3, which could be one of reasons for the rarity of Clade 3 isolates in the nature. [10]
Plum pox, also known as sharka, is the most devastating viral disease of stone fruit from the genus Prunus. The disease is caused by the plum pox virus (PPV), and the different strains may infect a variety of stone fruit species including peaches, apricots, plums, nectarine, almonds, and sweet and tart cherries. Wild and ornamental species of Prunus may also become infected by some strains of the virus.
Potyvirus is a genus of positive-strand RNA viruses in the family Potyviridae. Plants serve as natural hosts. Like begomoviruses, members of this genus may cause significant losses in agricultural, pastoral, horticultural, and ornamental crops. More than 200 species of aphids spread potyviruses, and most are from the subfamily Aphidinae. The genus contains 190 species and potyviruses account for about thirty percent of all currently known plant viruses.
Cucumber mosaic virus (CMV) is a plant pathogenic virus in the family Bromoviridae. This virus has a worldwide distribution and a very wide host range, having the reputation of the widest host range of any known plant virus. It can be transmitted from plant to plant both mechanically by sap and by aphids in a stylet-borne fashion. It can also be transmitted in seeds and by the parasitic weeds, Cuscuta sp. (dodder).
Potato virus S (PVS) is a plant pathogenic virus. It was first reported in Netherlands. PVS causes mild or no symptoms in most potato varieties. It is common in potatoes in many regions and does not cause significant yield losses. Field-grown potatoes are not routinely screened for this virus because it is not considered economically important. However, PVS often present in mixed infections with other potato viruses, which may accentuate symptom severity.
Potato virus Y (PVY) is a plant pathogenic virus of the family Potyviridae, and one of the most important plant viruses affecting potato production.
Prune dwarf virus (PDV) is an economically important plant pathogenic virus affecting Prunus species globally. PDV is found worldwide due to easy transmission through seed, pollen, and vegetative propagation. The virus is in the family Bromoviridae an important family of plant RNA viruses containing six genera, including Alfamovirus, Ilarvirus, Bromovirus, Amularvirus, Oleavirus, and Cucumovirus. PDV belongs to the genera Ilarvirus. It can cause dwarfism of leaves on certain prune and plum plants. It will also cause yellows in sour cherry, especially when present with Prunus necrotic ringspot virus. There are no known transmission vectors, though the pollen of infected cherry trees has been found to infect other cherry trees a small percent of the time.
Prunus necrotic ringspot virus (PNRSV) is a plant pathogenic virus causing ring spot diseases affecting species of the genus Prunus, as well as other species such as rose and hops. PNRSV is found worldwide due to easy transmission through plant propagation methods and infected seed. The virus is in the family Bromoviridae and genus Ilarvirus. Synonyms of PNRSV include European plum line pattern virus, hop B virus, hop C virus, plum line pattern virus, sour cherry necrotic ringspot virus, and peach ringspot virus.
Soybean mosaic virus (SMV) is a member of the plant virus genus Potyvirus. It infects mainly plants belonging to the family Fabaceae but has also been found infecting other economically important crops. SMV is the cause of soybean mosaic disease that occurs in all the soybean production areas of the world. Soybean is one of the most important sources of edible oil and proteins and pathogenic infections are responsible for annual yield losses of about $4 billion in the United States. Among these pathogens, SMV is the most important and prevalent viral pathogen in soybean production worldwide. It causes yield reductions of about 8% to 35%, but losses as high as 94% have been reported.
Sweet potato feathery mottle virus (SPFMV) is a member of the genus Potyvirus in the family Potyviridae. It is most widely recognized as one of the most regularly occurring causal agents of sweet potato viral disease (SPVD) and is currently observed in every continent except Antarctica. The number of locations where it is found is still increasing; generally, it is assumed that the virus is present wherever its host is. The virus has four strains that are found in varying parts of the world.
Potexvirus is a genus of pathogenic viruses in the order Tymovirales, in the family Alphaflexiviridae. Plants serve as natural hosts. There are 48 species in this genus, three of which are assigned to a subgenus. Diseases associated with this genus include: mosaic and ringspot symptoms. The genus name comes from POTato virus X).
Carlavirus, formerly known as the "Carnation latent virus group", is a genus of viruses in the order Tymovirales, in the family Betaflexiviridae. Plants serve as natural hosts. There are 53 species in this genus. Diseases associated with this genus include: mosaic and ringspot symptoms.
Apium virus Y (ApVY) is a plant pathogenic virus in the genus Potyvirus and the virus family Potyviridae.
Daphne virus S (DVS) is a plant virus that infects daphnes. Infection causes leaf distortion and chlorotic spot disease symptoms. Its genome is about 8,700 nucleotides in length and contains six open reading frames that encode for a viral replicase, a triple gene block and capsid proteins.
Nerine latent virus (NeLV) is a plant pathogenic virus. It infects Nerine, Narcissus, Hippeastrum and Ismene plants.
Allium is a genus of monocotyledonous flowering plants with hundreds of species, including the cultivated onion, garlic, scallion, shallot, leek, and chives. It is one of about 57 genera of flowering plants with more than 500 species. It is by far the largest genus in the Amaryllidaceae, and also in the Alliaceae in classification systems in which that family is recognized as separate.
Cassava brown streak virus is a species of positive-strand RNA viruses in the genus Ipomovirus and family Potyviridae which infects plants. Member viruses are unique in their induction of pinwheel, or scroll-shaped inclusion bodies in the cytoplasm of infected cells. Cylindrical inclusion bodies include aggregations of virus-encoded helicase proteins. These inclusion bodies are thought to be sites of viral replication and assembly, making then an important factor in the viral lifecycle. Viruses from both the species Cassava brown streak virus and Ugandan cassava brown streak virus (UCBSV), lead to the development of Cassava Brown Streak Disease (CBSD) within cassava plants.
Tomato spotted wilt orthotospovirus (TSWV) is a spherical negative-sense RNA virus. Transmitted by thrips, it causes serious losses in economically important crops and it is one of the most economically devastating plant viruses in the world.
Onion yellow dwarf virus (OYDV) is a plant virus in the genus Potyvirus that has been identified worldwide and mainly infects species of Allium such as onion, garlic, and leek. The virus causes mild to severe leaf malformation, and bulb reduction up to sixty percent has been observed in garlic.
Leek yellow stripe virus (LYSV) belongs to the genus Potyvirus. It was first detected in leek but also infects garlic and onion worldwide. Economically less important Allium spp., such as Allium angulosum, Allium caeruleum, Allium cyathophorum, Allium nutans, Allium scorodoprasum, Allium senescens subsp. montanum were also found to harbor the virus.
Shallot latent virus (SLV), a species of Carlavirus, was first identified in shallots in Netherlands. The virus particle is elongated, 650 nm in length.
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