Myomegalin

Last updated

PDE4DIP
Identifiers
Aliases PDE4DIP , CMYA2, MMGL, phosphodiesterase 4D interacting protein
External IDs OMIM: 608117 MGI: 1891434 HomoloGene: 66961 GeneCards: PDE4DIP
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)
RefSeq (protein)

NP_001034465
NP_001276630
NP_001276631
NP_835181

Location (UCSC) Chr 1: 148.81 – 149.05 Mb Chr 3: 97.6 – 97.8 Mb
PubMed search [3] [4]
Wikidata
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Myomegalin, also known as phosphodiesterase 4D-interacting protein or cardiomyopathy-associated protein 2, is a protein that in humans is encoded by the PDE4DIP gene. [5] [6] [7] It has roles in the formation of microtubules from the centrosome. [8] Its name derives from the fact that it is highly expressed in units of tubular myofibrils known as sarcomeres and is a large protein, at 2,324 amino acids. [9] It was first characterised in 2000. [9]

Structure and function

Myomegalin is mostly composed of alpha-helix and coiled-coil structures and has domains shared with microtubule-associated proteins. [9] It has several isoforms, at least two of which have been characterised, CM-MMG and EB-MMG. [8]

Myomegalin is necessary for the sufficient growth of microtubules from the centrosomes. The CM-MMG isoform binds at the centrosome with γ-tubulin in an AKAP9-dependent manner and on the near side of the Golgi apparatus, while the EB-MMG isoform binds with MAPRE1 at the Golgi apparatus and increases MAPRE1's effects on microtubule growth. [8]

Myomegalin, specifically the CM-MMG isoform, is a paralogue of CDK5RAP2. [8] [10] [11] Myomegalin depletion in cells does not lead to decreases in γ-tubulin or CDK5RAP2, unlike CDK5RAP2 depletion, and does not appear to affect mitosis through various spindle anchoring and orientation defects, unlike CDK5RAP2. This indicates that CDK5RAP2 can somewhat serve to compensate for the absence of myomegalin. However, myomegalin-depleted cells have slower migration, since microtubules are crucial for cell motility. [8]

Orthologues of myomegalin are seen in vertebrates as far back as bony fish, around 450 million years ago. In mammals, around 200 million years ago, myomegalin gained an Olduvai domain. Olduvai domains have so far only elsewhere been found in NBPF genes in placental mammals, many of which are adjacent to myomegalin on chromosome 1, so it is believed that these genes originated from a duplication of myomegalin. [12] Increased NPBF Olduvai domain duplications in humans have been implicated in human brain size evolution. [13]

Interactions

Myomegalin (PDE4DIP) has been shown to interact with PDE4D. [6]

History

The protein was discovered in 2000 and was so named because it was highly expressed in rat heart muscle sarcomeres (units of tubular myofibrils) and is a large protein, at 2,324 amino acids. [9]

See also

Related Research Articles

The Olduvai domain, known until 2018 as DUF1220 and the NBPF repeat, is a protein domain that shows a striking human lineage-specific (HLS) increase in copy number and appears to be involved in human brain evolution. The protein domain has also been linked to several neurogenetic disorders such as schizophrenia and increased severity of autism. In 2018, it was named by its discoverers after Olduvai Gorge in Tanzania, one of the most important archaeological sites for early humans, to reflect data indicating its role in human brain size and evolution.

<span class="mw-page-title-main">PDE4D</span> Protein-coding gene in the species Homo sapiens

cAMP-specific 3',5'-cyclic phosphodiesterase 4D is an enzyme that in humans is encoded by the PDE4D gene.

<span class="mw-page-title-main">Centrin 2</span> Protein-coding gene in humans

Centrin-2 is a protein that in humans is encoded by the CETN2 gene. It belongs to the centrin family of proteins.

<span class="mw-page-title-main">AKAP9</span> Protein-coding gene in the species Homo sapiens

A-kinase anchor protein 9 is a protein that in humans is encoded by the AKAP9 gene. AKAP9 is also known as Centrosome- and Golgi-localized protein kinase N-associated protein (CG-NAP) or AKAP350 or AKAP450

<span class="mw-page-title-main">ACTR1A</span> Protein-coding gene in the species Homo sapiens

Alpha-centractin (yeast) or ARP1 is a protein that in humans is encoded by the ACTR1A gene.

<span class="mw-page-title-main">Ninein</span> Ninein (s.m. Al Ninein) in dialetto Bolognese è il maiale.

Ninein is a protein that in humans is encoded by the NIN gene.

<span class="mw-page-title-main">CENPJ</span> Centromere- and microtubule-associated protein

Centromere protein J is a protein that in humans is encoded by the CENPJ gene. It is also known as centrosomal P4.1-associated protein (CPAP). During cell division, this protein plays a structural role in the maintenance of centrosome integrity and normal spindle morphology, and it is involved in microtubule disassembly at the centrosome. This protein can function as a transcriptional coactivator in the Stat5 signaling pathway and also as a coactivator of NF-kappaB-mediated transcription, likely via its interaction with the coactivator p300/CREB-binding protein.

<span class="mw-page-title-main">GOLGA3</span> Protein-coding gene in the species Homo sapiens

Golgin subfamily A member 3 is a protein that in humans is encoded by the GOLGA3 gene.

<span class="mw-page-title-main">CEP350</span> Protein-coding gene in the species Homo sapiens

Centrosome-associated protein 350 is a protein that in humans is encoded by the CEP350 gene.

<span class="mw-page-title-main">CDK5RAP2</span> Protein with roles in formation and stability of microtubules

CDK5 regulatory subunit-associated protein 2 is a protein that in humans is encoded by the CDK5RAP2 gene. It has necessary roles in the formation and stability of microtubules from the centrosome and has been found to be linked to human brain size variation in males. Multiple transcript variants exist for this gene, but the full-length nature of only two has been determined.

<span class="mw-page-title-main">KATNB1</span> Protein-coding gene in the species Homo sapiens

Katanin p80 WD40-containing subunit B1 is a protein that in humans is encoded by the KATNB1 gene.

<span class="mw-page-title-main">NBPF3</span> Protein-coding gene in the species Homo sapiens

Neuroblastoma breakpoint family, member 3, also known as NBPF3, is a human gene of the neuroblastoma breakpoint family, which resides on chromosome 1 of the human genome. NBPF3 is located at 1p36.12, immediately upstream of genes ALPL and RAP1GAP.

<span class="mw-page-title-main">CEP170</span> Protein-coding gene in the species Homo sapiens

Centrosomal protein 170kDa, also known as CEP170, is a protein that in humans is encoded by the CEP170 gene.

<span class="mw-page-title-main">Centrin 1</span> Protein-coding gene in the species Homo sapiens

Centrin-1 is a protein that in humans is encoded by the CETN1 gene. It belongs to the centrin family of proteins.

<span class="mw-page-title-main">CEP70</span> Protein-coding gene in the species Homo sapiens

Centrosomal protein of 70 kDa is a protein that in humans is encoded by the CEP70 gene. The protein interacts with γ-tubulin through its coiled coil domains to localize at the centrosome. CEP70 is involved in organizing microtubules in interphase cells and is required for proper organization and orientation of the mitotic spindle.

<span class="mw-page-title-main">CEP192</span> Protein-coding gene in the species Homo sapiens

Centrosomal protein of 192 kDa, also known as Cep192, is a protein that in humans is encoded by the CEP192 gene. It is the homolog of the C. elegans and D. melanogaster gene SPD-2.

<span class="mw-page-title-main">NBPF10</span> Protein-coding gene in the species Homo sapiens

Neuroblastoma breakpoint family member 10 is a protein that in Homo sapiens is encoded by the NBPF10 gene.

<span class="mw-page-title-main">HOOK2</span> Protein-coding gene in the species Homo sapiens

Protein Hook homolog 2 (HK2) is a protein that in humans is encoded by the HOOK2 gene.

<span class="mw-page-title-main">NBPF1</span> Protein-coding gene in the species Homo sapiens

Neuroblastoma breakpoint family, member 1, or NBPF1, is a protein that is encoded by the gene NBPF1 in humans. This protein is member of the neuroblastoma breakpoint family of proteins, a group of proteins that are thought to be involved in the development of the nervous system.

The neuroblastoma breaking point family (NBPF) is a family of genes involved in neuronal development. The family is highly specific to primates, with minimal similarity or presence in other mammals and no presence in other animals, and its genes' content has been subject to a very high number of duplications in humans. It was described by Vandepoele et al. in 2005 and named as such because NBPF1 was found to be broken by a chromosomal translocation in a neuroblastoma patient.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000178104 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000038170 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Seki N, Ohira M, Nagase T, Ishikawa K, Miyajima N, Nakajima D, et al. (October 1997). "Characterization of cDNA clones in size-fractionated cDNA libraries from human brain". DNA Research. 4 (5): 345–9. doi: 10.1093/dnares/4.5.345 . PMID   9455484.
  6. 1 2 Verde I, Pahlke G, Salanova M, Zhang G, Wang S, Coletti D, et al. (April 2001). "Myomegalin is a novel protein of the golgi/centrosome that interacts with a cyclic nucleotide phosphodiesterase". The Journal of Biological Chemistry. 276 (14): 11189–98. doi: 10.1074/jbc.M006546200 . hdl: 11573/1681344 . PMID   11134006.
  7. "Entrez Gene: PDE4DIP phosphodiesterase 4D interacting protein (myomegalin)".
  8. 1 2 3 4 5 Roubin R, Acquaviva C, Chevrier V, Sedjaï F, Zyss D, Birnbaum D, Rosnet O (February 2013). "Myomegalin is necessary for the formation of centrosomal and Golgi-derived microtubules". Biology Open. 2 (2): 238–50. doi:10.1242/bio.20123392. PMC   3575658 . PMID   23430395.
  9. 1 2 3 4 Verde I, Pahlke G, Salanova M, Zhang G, Wang S, Coletti D, et al. (April 2001). "Myomegalin is a novel protein of the golgi/centrosome that interacts with a cyclic nucleotide phosphodiesterase". The Journal of Biological Chemistry. 276 (14): 11189–98. doi: 10.1074/jbc.M006546200 . hdl: 11573/1681344 . PMID   11134006.
  10. Dumas L, Kim YH, Karimpour-Fard A, Cox M, Hopkins J, Pollack JR, Sikela JM (September 2007). "Gene copy number variation spanning 60 million years of human and primate evolution". Genome Research. 17 (9): 1266–77. doi:10.1101/gr.6557307. PMC   1950895 . PMID   17666543.
  11. O'Bleness MS, Dickens CM, Dumas LJ, Kehrer-Sawatzki H, Wyckoff GJ, Sikela JM (September 2012). "Evolutionary history and genome organization of DUF1220 protein domains". G3. 2 (9): 977–86. doi:10.1534/g3.112.003061. PMC   3429928 . PMID   22973535.
  12. O'Bleness MS, Dickens CM, Dumas LJ, Kehrer-Sawatzki H, Wyckoff GJ, Sikela JM (September 2012). "Evolutionary history and genome organization of DUF1220 protein domains". G3. 2 (9): 977–86. doi:10.1534/g3.112.003061. PMC   3429928 . PMID   22973535.
  13. Sikela JM, van Roy F (2018). "Changing the name of the NBPF/DUF1220 domain to the Olduvai domain". F1000Research. 6 (2185): 2185. doi: 10.12688/f1000research.13586.1 . PMC   5773923 . PMID   29399325.

Further reading