NBPF10

Last updated
NBPF20
Identifiers
Aliases NBPF20 , NBPF member 20
External IDs OMIM: 614007 HomoloGene: 41035 GeneCards: NBPF20
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001278267
NM_001397211

n/a

RefSeq (protein)

NP_001032764
NP_001264373
NP_001265196

n/a

Location (UCSC) Chr 1: 145.29 – 145.41 Mb n/a
PubMed search [2] n/a
Wikidata
View/Edit Human

Neuroblastoma breakpoint family member 10 is a protein that in Homo sapiens is encoded by the NBPF10 gene. [3] [4]

Contents

The full gene is 75,313 bp, with the major isoform of mRNA being 10,697 bp long. The gene is located at 1q21.1. NBPF contains what is known as the DUF1220 repeats. The highly conserved, repeated region is believed to be originated from MGC8902. The NBPF family has been linked to primate evolution. [4] It is assumed to be related to the 1q21.1 deletion syndrome and 1q21.1 duplication syndrome. [5]

Homology

Paralogs of NBPF10 includes other NBPF family members. Orthologs of NBPF10 are found in other primates; distant orthologs are found in bovine, equine, and canine

Unroot tree nbpf10.png

Functional role

Although NBPF10's function is unknown, there is reason to believe that NBPF10 is an important biomarker for the Odontoblast Phenotype [6]

Gene Neighborhood

NOTCH2NL, SEC22B, HFE2, TXNIP are close neighbors of NBPF10. All of these neighboring genes are well studied in their own right.

NBPF10 neighborhood.PNG

Post-translational modification

NBPF10 has extremely low threonine content which may make the protein less susceptible to post-translational modification.[ citation needed ]

Related Research Articles

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The Olduvai domain, known until 2018 as DUF1220 and the NBPF repeat, is a protein domain that shows a striking human lineage-specific (HLS) increase in copy number and appears to be involved in human brain evolution. The protein domain has also been linked to several neurogenetic disorders such as schizophrenia and increased severity of autism. In 2018, it was named by its discoverers after Olduvai Gorge in Tanzania, one of the most important archaeological sites for early humans, to reflect data indicating its role in human brain size and evolution.

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<span class="mw-page-title-main">NBPF3</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">PEX11B</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">NBPF15</span> Protein-coding gene in the species Homo sapiens

Neuroblastoma breakpoint family, member 15, also known as NBPF15, is a protein which in humans is encoded by the NBPF15 gene. The gene is 18762 bp long, with mRNA that is 3837 bp long. The gene is located on chromosome 1q21.1. Its sub-cellular location is predicted to be in the nucleus and cytoplasm. It contains what is known as the NBPF repeat, which is a two-exon stretch of sequence that is characteristic of all 21 members of the NBPF gene family. The repeat is considered the ancestral exons, and the NBPF family has been linked to primate evolution.

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<span class="mw-page-title-main">1q21.1 duplication syndrome</span> Medical condition

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<span class="mw-page-title-main">FAM203B</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">FAM63A</span> Protein-coding gene in the species Homo sapiens

Family with sequence similarity 63, member A is a protein that, is encoded by the FAM63A gene in humans,. It is located on the minus strand of chromosome 1 at locus 1q21.3.

<span class="mw-page-title-main">NBPF1</span> Protein-coding gene in the species Homo sapiens

Neuroblastoma breakpoint family, member 1, or NBPF1, is a protein that is encoded by the gene NBPF1 in humans. This protein is member of the neuroblastoma breakpoint family of proteins, a group of proteins that are thought to be involved in the development of the nervous system.

<span class="mw-page-title-main">NBPF19</span> Protein-coding gene in the species Homo sapiens

Neuroblastoma breakpoint family member 19, or NBPF19, is a protein that in humans is encoded by the NBPF19 gene. This protein is included in the neuroblastoma breakpoint family of proteins.

The neuroblastoma breaking point family (NBPF) is a family of genes involved in neuronal development. The family is highly specific to primates, with minimal similarity or presence in other mammals and no presence in other animals, and its genes' content has been subject to a very high number of duplications in humans. It was described by Vandepoele et al. in 2005 and named as such because NBPF1 was found to be broken by a chromosomal translocation in a neuroblastoma patient.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000162825 - Ensembl, May 2017
  2. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  3. "Entrez Gene: NBPF10 neuroblastoma breakpoint family, member 10" . Retrieved 28 April 2010.
  4. 1 2 Vandepoele K, Van Roy N, Staes K, Speleman F, van Roy F (November 2005). "A novel gene family NBPF: intricate structure generated by gene duplications during primate evolution". Mol. Biol. Evol. 22 (11): 2265–74. doi: 10.1093/molbev/msi222 . PMID   16079250.
  5. Dumas, L.; Sikela, J. M. (2009-01-01). "DUF1220 Domains, Cognitive Disease, and Human Brain Evolution". Cold Spring Harbor Symposia on Quantitative Biology. Cold Spring Harbor Laboratory. 74: 375–382. doi: 10.1101/sqb.2009.74.025 . ISSN   0091-7451. PMC   2902282 . PMID   19850849.
  6. Butler W.T.; Ritchie H. (February 1995). "The nature and functional significance of dentin extracellular matrix proteins". Int J Dev Biol. 39 (1): 169–79. PMID   7626404.