LaTeX is a software system for typesetting documents. LaTeX markup describes the content and layout of the document, as opposed to the formatted text found in WYSIWYG word processors like Microsoft Word, LibreOffice Writer and Apple Pages. The writer uses markup tagging conventions to define the general structure of a document, to stylise text throughout a document, and to add citations and cross-references. A TeX distribution such as TeX Live or MiKTeX is used to produce an output file suitable for printing or digital distribution.
A package manager or package-management system is a collection of software tools that automates the process of installing, upgrading, configuring, and removing computer programs for a computer in a consistent manner.
BibTeX is both a bibliographic flat-file database file format and a software program for processing these files to produce lists of references (citations). The BibTeX file format is a widely used standard with broad support by reference management software.
The Yellowdog Updater Modified (YUM) is a free and open-source command-line package-management utility for computers running the Linux operating system using the RPM Package Manager. Though YUM has a command-line interface, several other tools provide graphical user interfaces to YUM functionality.
In Unix computing, Ion is a tiling and tabbing window manager for the X Window System. It is designed such that it is possible to manage windows using only a keyboard, without needing a mouse. It is the successor of PWM and is written by the same author, Tuomo Valkonen. Since the first release of Ion in the summer 2000, similar alternative window management ideas have begun to show in other new window managers: Larswm, ratpoison, StumpWM, wmii, xmonad and dwm.
CiteULike was a web service which allowed users to save and share citations to academic papers. Based on the principle of social bookmarking, the site worked to promote and to develop the sharing of scientific references amongst researchers. In the same way that it is possible to catalog web pages or photographs, scientists could share citation information using CiteULike. Richard Cameron developed CiteULike in November 2004 and in 2006 Oversity Ltd. was established to develop and support CiteULike. In February 2019, CiteULike announced that it would be ceasing operations as of March 30, 2019.
DSpace is an open source repository software package typically used for creating open access repositories for scholarly and/or published digital content. While DSpace shares some feature overlap with content management systems and document management systems, the DSpace repository software serves a specific need as a digital archives system, focused on the long-term storage, access and preservation of digital content. The optional DSpace registry lists almost three thousand repositories all over the world.
JabRef is an open-source, cross-platform citation and reference management software. It is used to collect, organize and search bibliographic information.
EndNote is a commercial reference management software package, used to manage bibliographies and references when writing essays, reports and articles. EndNote was written by Richard Niles, and ownership changed hands several times since it was launched in 1989 by Niles & Associates: in 2000 it was acquired by Institute for Scientific Information’s ResearchSoft Division, part of Thomson Corporation, and in 2016 by Clarivate. EndNote's main competitors are Mendeley and Zotero. Unlike Mendeley and Zotero, EndNote is neither free-to-use nor offers a freemium model.
PMB is a fully featured open source integrated library system. It is continuously developed and maintained by the French company PMB Services.
The following tables compare notable reference management software. The comparison includes older applications that may no longer be supported, as well as actively-maintained software.
BibDesk is an open-source reference management software package for macOS, used to manage bibliographies and references when writing essays and articles. It can also be used to organize and maintain a library of documents in PDF format and other formats. It is primarily a BibTeX front-end for use with LaTeX, but also offers external bibliographic database connectivity for importing, a variety of means for exporting, and capability for linking to local documents and automatically filing local documents. It takes advantage of many macOS features such as AppleScript and Spotlight.
RefDB is a client/server reference database and bibliography tool for markup languages like SGML, XML, and LaTeX. It is suitable for standalone use for the purpose of self-archiving, but can be used as an institutional repository as well. Data storage proper is done in one of several supported SQL database engines. RefDB runs on Unix-like operating systems and on Windows/Cygwin. RefDB is licensed under the GPL.
WIKINDX is a free bibliographic and quotations/notes management and article authoring system designed either for single use and multi-user collaborative use across the internet. WIKINDX falls within the category of reference management software, but also provides functionality to write notes and entire papers.
RPM Package Manager (RPM) is a free and open-source package management system. The name RPM refers to the .rpm file format and the package manager program itself. RPM was intended primarily for Linux distributions; the file format is the baseline package format of the Linux Standard Base.
Org Mode is a mode for document editing, formatting, and organizing within the free software text editor GNU Emacs and its derivatives, designed for notes, planning, and authoring. The name is used to encompass plain text files that include simple marks to indicate levels of a hierarchy, and an editor with functions that can read the markup and manipulate hierarchy elements.
The following outline is provided as an overview of and topical guide to the Perl programming language:
Zim is a graphical text editor designed to maintain a collection of locally stored wiki-pages, a personal wiki. It works as a personal knowledge base and note-taking software application that operates on text files using markdown. Each wiki-page can contain things like text with simple formatting, links to other pages, attachments, and images. Additional plugins, such as an equation editor and spell-checker, are also available. The wiki-pages are stored in a folder structure in plain text files with wiki formatting. Zim can be used with the Getting Things Done method.
