Theobroma cacao is a small evergreen tree in the family Malvaceae. Its seeds, cocoa beans, are used to make chocolate liquor, cocoa solids, cocoa butter and chocolate. Native to the tropics of the Americas, the largest producer of cocoa beans in 2018 was Ivory Coast, at 2.2 million tons. Its leaves are alternate, entire, unlobed, 10–50 cm (4–20 in) long and 5–10 cm (2–4 in) broad.
Phytophthora cinnamomi, also known as cinnamon fungus, is a soil-borne water mould that produces an infection which causes a condition in plants variously called "dieback", "root rot", or, "ink disease".
Pichia kudriavzevii is a budding yeast involved in chocolate production. P. kudriavzevii is an emerging fungal nosocomial pathogen primarily found in the immunocompromised and those with hematological malignancies. It has natural resistance to fluconazole, a standard antifungal agent. It is most often found in patients who have had prior fluconazole exposure, sparking debate and conflicting evidence as to whether fluconazole should be used prophylactically. Mortality due to P. kudriavzevii fungemia is much higher than the more common C. albicans. Other Candida species that also fit this profile are C. parapsilosis, C. glabrata, C. tropicalis, C. guillermondii and C. rugosa.
Phytophthora palmivora is an oomycete that causes bud-rot of palms, fruit-rot or kole-roga of coconut and areca nut. These are among the most serious diseases caused by fungi and moulds in South India. It occurs almost every year in Malnad, Mysore, North & South Kanara, Malabar and other areas. Similar diseases of palms are also known to occur in Sri Lanka, Mauritius, and Sumatra. The causative organism was first identified as P. palmivora by Edwin John Butler in 1917.
Phomopsis cane and leaf spot occurs wherever grapes are grown. Phomopsis cane and leaf spot is more severe in grape-growing regions characterized by a humid temperate climate through the growing season. Crop losses up to 30% have been reported to be caused by Phomopsis cane and leaf spot.
Ralstonia solanacearum is an aerobic non-spore-forming, Gram-negative, plant pathogenic bacterium. R. solanacearum is soil-borne and motile with a polar flagellar tuft. It colonises the xylem, causing bacterial wilt in a very wide range of potential host plants. It is known as Granville wilt when it occurs in tobacco. Bacterial wilts of tomato, pepper, eggplant, and Irish potato caused by R. solanacearum were among the first diseases that Erwin Frink Smith proved to be caused by a bacterial pathogen. Because of its devastating lethality, R. solanacearum is now one of the more intensively studied phytopathogenic bacteria, and bacterial wilt of tomato is a model system for investigating mechanisms of pathogenesis. Ralstonia was until recently classified as Pseudomonas, with similarity in most aspects, except that it does not produce fluorescent pigment like Pseudomonas. The genomes from different strains vary from 5.5 Mb up to 6 Mb, roughly being 3.5 Mb of a chromosome and 2 Mb of a megaplasmid. While the strain GMI1000 was one of the first phytopathogenic bacteria to have its genome completed, the strain UY031 was the first R. solanacearum to have its methylome reported. Within the R. solanacearum species complex, the four major monophyletic clusters of strains are termed phylotypes, that are geographically distinct: phylotypes I-IV are found in Asia, the Americas, Africa, and Oceania, respectively.
Cephaleuros virescens is an algal plant pathogen that infects tea, coffee and coconut plants, causing algal leaf spot or algal rust.
Erythricium salmonicolor is a species of fungus in the family Corticiaceae. Basidiocarps are effused, corticioid, smooth, and pinkish and grow on wood. The fungus is a commercially significant plant pathogen which has become a serious problem, especially in Brazil. Erythricium salmonicolor causes Pink Disease, most commonly in Citrus, although E. salmonicolor has a wide host range including rubber and cacao trees. Pink Disease causes branch and stem die-back due to canker formation. The cankers are recognizable by gum exudation and longitudinal splitting of the bark.
Lasiodiplodia theobromae is a plant pathogen with a very wide host range. It causes rotting and dieback in most species it infects. It is a common post harvest fungus disease of citrus known as stem-end rot. It is a cause of bot canker of grapevine. It also infects Biancaea sappan, a species of flowering tree also known as Sappanwood.
Verticillium dahliae is a fungal plant pathogen. It causes verticillium wilt in many plant species, causing leaves to curl and discolor. It may cause death in some plants. Over 400 plant species are affected by Verticillium complex.
Botryosphaeria ribis is a fungal plant pathogen that infects many trees causing cankers, dieback and death.
Albonectria rigidiuscula is a fungal plant pathogen. The anamorph of A. rigidiuscula the fungus Fusarium decemcellulare is associated with inflorescence wilt and vascular necrosis in fruit tree crops such as Mango, Longan and Rambutan. F. decemcellulare causes a disease known as cushion gall in Theobroma cacao and other tropical trees.
Phytophthora megakarya is an oomycete plant pathogen that causes black pod disease in cocoa trees in west and central Africa. This pathogen can cause detrimental loss of yield in the economically important cocoa industry, worth approximately $70 billion annually. It can damage any part of the tree, causing total yield losses which can easily reach 20-25%. A mixture of chemical and cultural controls, as well as choosing resistant plant varieties, are often necessary to control this pathogen.
Moniliophthora perniciosa is a fungus that causes "witches' broom disease" (WBD) of the cocoa tree T. cacao. This pathogen is currently limited to South America, Panama and the Caribbean, and is perhaps one of the best-known cocoa diseases, thought to have co-evolved with cocoa in its centre of origin.
Moniliophthora roreri is a basidiomycete fungus that causes frosty pod rot disease, one of the most serious problems for cacao production in Latin America. This disease and together with witches’ broom disease and black pod rot constitute the cacao disease trilogy. It causes serious losses in southwestern parts of South America; spores are dry and powdery and are spread easily by water movement, wind, or movement of pods; disease spread is highest during periods of high rainfall.
Phellinus noxius is a plant pathogen. It attacks a wide range of tropical plants, and is the cause of brown root rot disease. It was described as "an aggressive and destructive pathogen". The pathogen invades roots with contact between roots of a potential host with the substrate on which the fungus is growing.
Forest dieback is a condition in trees or woody plants in which peripheral parts are killed, either by pathogens, parasites or conditions like acid rain, drought, and more. These episodes can have disastrous consequences such as reduced resiliency of the ecosystem, disappearing important symbiotic relationships and thresholds. Some tipping points for major climate change forecast in the next century are directly related to forest diebacks.
Rhizoctonia is a genus of fungi in the order Cantharellales. Species form thin, effused, corticioid basidiocarps, but are most frequently found in their sterile, anamorphic state. Rhizoctonia species are saprotrophic, but some are also facultative plant pathogens, causing commercially important crop diseases. Some are also endomycorrhizal associates of orchids. The genus name was formerly used to accommodate many superficially similar, but unrelated fungi.
Kauri dieback is a forest dieback disease of the native kauri trees of New Zealand that is suspected to be caused by the oomycete Phytophthora agathidicida. Symptoms can include root rot and associated rot in a collar around the base of the tree, bleeding resin, yellowing and chlorosis of the leaves followed by extensive defoliation, and finally, death.
Cocoa necrosis virus (CoNV) is a plant pathogenic virus of the genus nepovirus that infects Theobroma cacao en natura causing cacao necrosis disease. CoNV is considered synonymous with Strain S of cacao swollen shoot virus. Unlike Cacao swollen shoot virus, it is not transmitted by mealybugs nor vectored by aphids, beetles, or leafhoppers that also commonly infest cacao. It is serologically, distantly related to Tomato black ring virus and very distantly related to Grapevine chrome mosaic virus.
