ANKS1A

Last updated
ANKS1A
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases ANKS1A , ANKS1, ankyrin repeat and sterile alpha motif domain containing 1A
External IDs OMIM: 608994 MGI: 2446180 HomoloGene: 9068 GeneCards: ANKS1A
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_015245

NM_001286040
NM_001286041
NM_181413
NM_001374802

RefSeq (protein)

NP_056060

NP_001272969
NP_001272970
NP_852078

Location (UCSC) Chr 6: 34.89 – 35.09 Mb Chr 17: 28.13 – 28.28 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Ankyrin repeat and SAM domain-containing protein 1A (ANKS1A), also known as ODIN, is a protein that in humans is encoded by the ANKS1A gene on chromosome 6. [5] [6]

Contents

It is ubiquitously expressed in many tissues and cell types. [7] ODIN is known to regulate the epidermal growth factor receptor (EGFR) and EphA receptor signaling pathways. [8] As a Src family kinase target, ODIN has been implicated in the development of cancer. [9] The ANKS1A gene also contains one of 27 SNPs associated with increased risk of coronary artery disease. [10]

Structure

Gene

The ANKS1A gene resides on chromosome 6 at the band 6p21.31 and includes 29 exons. [6] This gene produces 2 isoforms through alternative splicing. [11]

Protein

ODIN is a member of the ankyrin repeat and sterile alpha motif domain-containing (ANKS) family and contains 6 ankyrin repeats, 1 phosphotyrosine binding (PTD) domain, and 2 tandem sterile alpha motif (SAM) domains. [11] [12] The first SAM domain binds to the SAM domain of the EphA2 receptor by adopting a mid-loop/end-helix conformation and may regulate EphA2 endocytosis. [12] [13]

Function

ODIN is widely expressed in tissues including heart, brain, placenta, lung, liver, skeletal muscle, kidney and pancreas. [14] ODIN has been identified as one of the tyrosine phosphorylated proteins induced by activating epidermal growth factor or platelet-derived growth factor receptor tyrosine kinases. [14] ODIN is involved in negative regulation of the EGFR signaling pathway. [8] It is reported that ODIN level is correlated with the degree of increased EGF-induced EGFR trafficking to recycle endosomes and recycle back to the cell surface, suggesting a role in EGFR recycling. [15] Furthermore, ODIN serves as a key adaptor protein regulating the EphA receptor signaling pathway, which is critical for regulating EphA8-mediated cell migration and neurite outgrowth. [16] [17] It has been demonstrated that deletion of the phosphotyrosine binding domain in ODIN will lead to an immaturely developed subcommissural organ (SCO) with a severe midbrain hydrocephalic phenotype, which means ODIN also plays a role in the proper development of the SCO and in ependymal cells in the cerebral aqueduct. [18]

Clinical significance

As a novel target of Src family kinases, which are implicated in the development of some colorectal cancers, ODIN may be involved in cancer cell signaling mechanisms. [19] In a study, 64 colorectal cancer cell lines were tested for their expression of Lck. Mass spectrometric analyses of Lck-purified proteins subsequently identified several proteins readily known as SFK kinase substrates, including cortactin, Tom1L1 (SRCASM), GIT1, vimentin and AFAP1L2 (XB130). Additional proteins previously reported as substrates of other tyrosine kinases were also detected, including ODIN. ODIN was further analyzed and found to contain substantially less pY upon inhibition of SFK activity in SW620 cells, indicating that it is a formerly unknown SFK target in colorectal carcinoma cells. [19] Furthermore, it has been found that ODIN regulates COPII-mediated anterograde transport of receptor tyrosine kinases, which is a critical mechanism in the process of tumor genesis. [20]

Clinical marker

A multi-locus genetic risk score study based on a combination of 27 loci, including the ANKS1A gene, identified individuals at increased risk for both incident and recurrent coronary artery disease events, as well as an enhanced clinical benefit from statin therapy. The study was based on a community cohort study (the Malmo Diet and Cancer study) and four additional randomized controlled trials of primary prevention cohorts (JUPITER and ASCOT) and secondary prevention cohorts (CARE and PROVE IT-TIMI 22). [10]

Related Research Articles

<span class="mw-page-title-main">Tyrosine kinase</span> Class hi residues

A tyrosine kinase is an enzyme that can transfer a phosphate group from ATP to the tyrosine residues of specific proteins inside a cell. It functions as an "on" or "off" switch in many cellular functions.

<span class="mw-page-title-main">Epidermal growth factor receptor</span> Transmembrane protein

The epidermal growth factor receptor is a transmembrane protein that is a receptor for members of the epidermal growth factor family of extracellular protein ligands.

<span class="mw-page-title-main">GRB7</span> Protein-coding gene in the species Homo sapiens

Growth factor receptor-bound protein 7, also known as GRB7, is a protein that in humans is encoded by the GRB7 gene.

The MAPK/ERK pathway is a chain of proteins in the cell that communicates a signal from a receptor on the surface of the cell to the DNA in the nucleus of the cell.

<span class="mw-page-title-main">Receptor tyrosine kinase</span> Class of enzymes

Receptor tyrosine kinases (RTKs) are the high-affinity cell surface receptors for many polypeptide growth factors, cytokines, and hormones. Of the 90 unique tyrosine kinase genes identified in the human genome, 58 encode receptor tyrosine kinase proteins. Receptor tyrosine kinases have been shown not only to be key regulators of normal cellular processes but also to have a critical role in the development and progression of many types of cancer. Mutations in receptor tyrosine kinases lead to activation of a series of signalling cascades which have numerous effects on protein expression. Receptor tyrosine kinases are part of the larger family of protein tyrosine kinases, encompassing the receptor tyrosine kinase proteins which contain a transmembrane domain, as well as the non-receptor tyrosine kinases which do not possess transmembrane domains.

<span class="mw-page-title-main">Ephrin receptor</span> Protein family

Eph receptors are a group of receptors that are activated in response to binding with Eph receptor-interacting proteins (Ephrins). Ephs form the largest known subfamily of receptor tyrosine kinases (RTKs). Both Eph receptors and their corresponding ephrin ligands are membrane-bound proteins that require direct cell-cell interactions for Eph receptor activation. Eph/ephrin signaling has been implicated in the regulation of a host of processes critical to embryonic development including axon guidance, formation of tissue boundaries, cell migration, and segmentation. Additionally, Eph/ephrin signaling has been identified to play a critical role in the maintenance of several processes during adulthood including long-term potentiation, angiogenesis, and stem cell differentiation and cancer.

<span class="mw-page-title-main">Platelet-derived growth factor receptor</span> Protein family

Platelet-derived growth factor receptors (PDGF-R) are cell surface tyrosine kinase receptors for members of the platelet-derived growth factor (PDGF) family. PDGF subunits -A and -B are important factors regulating cell proliferation, cellular differentiation, cell growth, development and many diseases including cancer. There are two forms of the PDGF-R, alpha and beta each encoded by a different gene. Depending on which growth factor is bound, PDGF-R homo- or heterodimerizes.

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<span class="mw-page-title-main">PTPN6</span> Protein-coding gene in the species Homo sapiens

Tyrosine-protein phosphatase non-receptor type 6, also known as Src homology region 2 domain-containing phosphatase-1 (SHP-1), is an enzyme that in humans is encoded by the PTPN6 gene.

<span class="mw-page-title-main">SHC1</span> Protein-coding gene in humans

SHC-transforming protein 1 is a protein that in humans is encoded by the SHC1 gene. SHC has been found to be important in the regulation of apoptosis and drug resistance in mammalian cells.

<span class="mw-page-title-main">ERBB3</span> Protein found in humans

Receptor tyrosine-protein kinase erbB-3, also known as HER3, is a membrane bound protein that in humans is encoded by the ERBB3 gene.

<span class="mw-page-title-main">STAT5A</span> Protein-coding gene in the species Homo sapiens

Signal transducer and activator of transcription 5A is a protein that in humans is encoded by the STAT5A gene. STAT5A orthologs have been identified in several placentals for which complete genome data are available.

<span class="mw-page-title-main">Proto-oncogene tyrosine-protein kinase Src</span> Mammalian protein found in Homo sapiens

Proto-oncogene tyrosine-protein kinase Src, also known as proto-oncogene c-Src, or simply c-Src, is a non-receptor tyrosine kinase protein that in humans is encoded by the SRC gene. It belongs to a family of Src family kinases and is similar to the v-Src gene of Rous sarcoma virus. It includes an SH2 domain, an SH3 domain and a tyrosine kinase domain. Two transcript variants encoding the same protein have been found for this gene.

<span class="mw-page-title-main">EPH receptor A2</span> Protein-coding gene in humans

EPH receptor A2 is a protein that in humans is encoded by the EPHA2 gene.

<span class="mw-page-title-main">EPHA8</span> Protein-coding gene in the species Homo sapiens

Ephrin type-A receptor 8 is a protein that in humans is encoded by the EPHA8 gene.

<span class="mw-page-title-main">Ephrin B3</span> Protein-coding gene in the species Homo sapiens

Ephrin-B3 is a protein that in humans is encoded by the EFNB3 gene.

<span class="mw-page-title-main">EPH receptor A1</span> Protein-coding gene in the species Homo sapiens

EPH receptor A1 is a protein that in humans is encoded by the EPHA1 gene.

<span class="mw-page-title-main">FLT4</span> Protein-coding gene in the species Homo sapiens

Fms-related tyrosine kinase 4, also known as FLT4, is a protein which in humans is encoded by the FLT4 gene.

A non-receptor tyrosine kinase (nRTK) is a cytosolic enzyme that is responsible for catalysing the transfer of a phosphate group from a nucleoside triphosphate donor, such as ATP, to tyrosine residues in proteins. Non-receptor tyrosine kinases are a subgroup of protein family tyrosine kinases, enzymes that can transfer the phosphate group from ATP to a tyrosine residue of a protein (phosphorylation). These enzymes regulate many cellular functions by switching on or switching off other enzymes in a cell.

Src kinase family is a family of non-receptor tyrosine kinases that includes nine members: Src, Yes, Fyn, and Fgr, forming the SrcA subfamily, Lck, Hck, Blk, and Lyn in the SrcB subfamily, and Frk in its own subfamily. Frk has homologs in invertebrates such as flies and worms, and Src homologs exist in organisms as diverse as unicellular choanoflagellates, but the SrcA and SrcB subfamilies are specific to vertebrates. Src family kinases contain six conserved domains: a N-terminal myristoylated segment, a SH2 domain, a SH3 domain, a linker region, a tyrosine kinase domain, and C-terminal tail.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000064999 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000024219 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Nagase T, Seki N, Ishikawa K, Ohira M, Kawarabayasi Y, Ohara O, Tanaka A, Kotani H, Miyajima N, Nomura N (October 1996). "Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain". DNA Research. 3 (5): 321–9, 341–54. doi: 10.1093/dnares/3.5.321 . PMID   9039502.
  6. 1 2 "Entrez Gene: ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A".
  7. "BioGPS - your Gene Portal System". biogps.org. Retrieved 2016-10-10.[ permanent dead link ]
  8. 1 2 Kristiansen TZ, Nielsen MM, Blagoev B, Pandey A, Mann M (August 2004). "Mouse embryonic fibroblasts derived from Odin deficient mice display a hyperproliiferative phenotype". DNA Research. 11 (4): 285–92. PMID   15500253.
  9. Emaduddin M, Edelmann MJ, Kessler BM, Feller SM (2008-01-01). "Odin (ANKS1A) is a Src family kinase target in colorectal cancer cells". Cell Communication and Signaling. 6: 7. doi: 10.1186/1478-811X-6-7 . PMC   2584000 . PMID   18844995.
  10. 1 2 Mega JL, Stitziel NO, Smith JG, Chasman DI, Caulfield MJ, Devlin JJ, Nordio F, Hyde CL, Cannon CP, Sacks FM, Poulter NR, Sever PS, Ridker PM, Braunwald E, Melander O, Kathiresan S, Sabatine MS (June 2015). "Genetic risk, coronary heart disease events, and the clinical benefit of statin therapy: an analysis of primary and secondary prevention trials". Lancet. 385 (9984): 2264–71. doi:10.1016/S0140-6736(14)61730-X. PMC   4608367 . PMID   25748612.
  11. 1 2 "ANKS1A - Ankyrin repeat and SAM domain-containing protein 1A - Homo sapiens (Human) - ANKS1A gene & protein". www.uniprot.org. Retrieved 2016-10-10.
  12. 1 2 Mercurio FA, Marasco D, Pirone L, Pedone EM, Pellecchia M, Leone M (March 2012). "Solution structure of the first Sam domain of Odin and binding studies with the EphA2 receptor". Biochemistry. 51 (10): 2136–45. doi:10.1021/bi300141h. PMC   3319784 . PMID   22332920.
  13. Mercurio FA, Di Natale C, Pirone L, Scognamiglio PL, Marasco D, Pedone EM, Saviano M, Leone M (July 2015). "Peptide Fragments of Odin-Sam1: Conformational Analysis and Interaction Studies with EphA2-Sam". ChemBioChem. 16 (11): 1629–36. doi:10.1002/cbic.201500197. PMID   26120079. S2CID   24673174.
  14. 1 2 Pandey A, Blagoev B, Kratchmarova I, Fernandez M, Nielsen M, Kristiansen TZ, Ohara O, Podtelejnikov AV, Roche S, Lodish HF, Mann M (November 2002). "Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases". Oncogene. 21 (52): 8029–36. doi: 10.1038/sj.onc.1205988 . PMID   12439753.
  15. Tong J, Sydorskyy Y, St-Germain JR, Taylor P, Tsao MS, Moran MF (2013-01-01). "Odin (ANKS1A) modulates EGF receptor recycling and stability". PLOS ONE. 8 (6): e64817. Bibcode:2013PLoSO...864817T. doi: 10.1371/journal.pone.0064817 . PMC   3692516 . PMID   23825523.
  16. Kim J, Lee H, Kim Y, Yoo S, Park E, Park S (April 2010). "The SAM domains of Anks family proteins are critically involved in modulating the degradation of EphA receptors". Molecular and Cellular Biology. 30 (7): 1582–92. doi:10.1128/MCB.01605-09. PMC   2838079 . PMID   20100865.
  17. Shin J, Gu C, Park E, Park S (December 2007). "Identification of phosphotyrosine binding domain-containing proteins as novel downstream targets of the EphA8 signaling function". Molecular and Cellular Biology. 27 (23): 8113–26. doi:10.1128/MCB.00794-07. PMC   2169194 . PMID   17875921.
  18. Park S, Lee H, Park S (May 2015). "In Vivo Expression of the PTB-deleted Odin Mutant Results in Hydrocephalus". Molecules and Cells. 38 (5): 426–31. doi:10.14348/molcells.2015.2288. PMC   4443284 . PMID   26018557.
  19. 1 2 Emaduddin M, Edelmann MJ, Kessler BM, Feller SM (October 2008). "Odin (ANKS1A) is a Src family kinase target in colorectal cancer cells". Cell Communication and Signaling. 6: 7. doi: 10.1186/1478-811X-6-7 . PMC   2584000 . PMID   18844995.
  20. Lee H, Noh H, Mun J, Gu C, Sever S, Park S (September 2016). "Anks1a regulates COPII-mediated anterograde transport of receptor tyrosine kinases critical for tumorigenesis". Nature Communications. 7: 12799. Bibcode:2016NatCo...712799L. doi:10.1038/ncomms12799. PMC   5027278 . PMID   27619642.

Further reading