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Acidobacteriota is a phylum of Gram-negative bacteria. Its members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture.
The Gemmatimonadota are a phylum of bacteria established in 2003. The phylum contains two classes Gemmatimonadetes and Longimicrobia.
Mycobacterium monacense is a yellow-pigmented, non-photochromogenic species of mycobacterium named after Monacum, the Latin name of the German city Munich where the first strain was isolated. It grows in less than a week on solid medium.
"Pseudomonas blatchfordae" is a Gram-negative soil bacteria isolated from tomato pith necrosis and the common bean. It is not a validly recognized species. Based on 16S rRNA analysis, it falls within the P. fluorescens group.
Pseudomonas brassicacearum is a Gram-negative soil bacterium that infects the roots of Brassica napus, from which it derives its name. Based on 16S rRNA analysis, P. brassicacearum falls within the P. fluorescens group. It has also been shown to have both pathogenic and plant growth-promoting effects on tomato plants.
Pseudomonas thivervalensis is a Gram-negative soil bacterium that infects the roots of Arabidopsis thaliana. Based on 16S rRNA analysis, P. thivervalensis falls within the P. fluorescens group. It derives its name from the fact that it was first isolated in Thiverval, France.
Pseudomonas moraviensis is a Gram-negative soil bacterium. It is named after Moravia, the region of the Czech Republic where it was first isolated. The type strain is CCM 7280T.
Pseudomonas vranovensis is a Gram-negative soil bacterium.
Pseudomonas trivialis is a fluorescent, Gram-negative bacterium isolated from the phyllosphere of grasses. The type strain is DSM 14937.
Pseudomonas poae is a fluorescent, Gram-negative bacterium isolated from the phyllosphere of grasses. The type strain is DSM 14936.
Pseudomonas congelans is a fluorescent, Gram-negative bacterium isolated from the phyllosphere of grasses. The type strain is DSM 14939.
The Synergistota is a phylum of anaerobic bacteria that show Gram-negative staining and have rod/vibrioid cell shape. Although Synergistota have a diderm cell envelope, the genes for various proteins involved in lipopolysaccharides biosynthesis have not yet been detected in Synergistota, indicating that they may have an atypical outer cell envelope. The Synergistota inhabit a majority of anaerobic environments including animal gastrointestinal tracts, soil, oil wells, and wastewater treatment plants and they are also present in sites of human diseases such as cysts, abscesses, and areas of periodontal disease. Due to their presence at illness related sites, the Synergistota are suggested to be opportunistic pathogens but they can also be found in healthy individuals in the microbiome of the umbilicus and in normal vaginal flora. Species within this phylum have also been implicated in periodontal disease, gastrointestinal infections and soft tissue infections. Other species from this phylum have been identified as significant contributors in the degradation of sludge for production of biogas in anaerobic digesters and are potential candidates for use in renewable energy production through their production of hydrogen gas. All of the known Synergistota species and genera are presently part of a single class (Synergistia), order (Synergistiales), and family (Synergistaceae).
Arcanobacterium is a genus of bacteria. They are gram-positive, non–acid fast, nonmotile, facultatively anaerobic, and non–endospore forming. They are widely distributed in nature in the microbiota of animals and are mostly innocuous. Some can cause disease in humans and other animals. As with various species of a microbiota, they usually are not pathogenic but can occasionally opportunistically capitalize on atypical access to tissues or weakened host defenses.
Deinococcus is in the monotypic family Deinococcaceae, and one genus of three in the order Deinococcales of the bacterial phylum Deinococcota highly resistant to environmental hazards. These bacteria have thick cell walls that give them Gram-positive stains, but they include a second membrane and so are closer in structure to Gram-negative bacteria. Deinococcus survive when their DNA is exposed to high doses of gamma and UV radiation. Whereas other bacteria change their structure in the presence of radiation, such as by forming endospores, Deinococcus tolerate it without changing their cellular form and do not retreat into a hardened structure. They are also characterized by the presence of the carotenoid pigment deinoxanthin that give them their pink color. They are usually isolated according to these two criteria. In August 2020, scientists reported that bacteria from Earth, particularly Deinococcus bacteria, were found to survive for three years in outer space, based on studies conducted on the International Space Station. These findings support the notion of panspermia, the hypothesis that life exists throughout the Universe, distributed in various ways, including space dust, meteoroids, asteroids, comets, planetoids or contaminated spacecraft.
Pedobacter terricola is a species of Gram-negative, non-motile, pleomorphic bacteria. Its type strain is DS-45(T).
Thorselliaceae is a family of bacteria belonging to the class Gammaproteobacteria and it was first described in February 2015. It is not assigned to an order. The family consists of four species in two genera. The bacteria are Gram-negative and rod shaped, approximately 1 μm wide and 2 μm long. They are facultative anaerobes and motile. Thorselliaceae bacteria have been found around the world associated with vector mosquitoes, mainly with vectors of malaria.
Saccharicrinis is genus of bacteria from the family of Marinilabiliaceae.
Aquirufa is a genus of red-pigmented freshwater bacteria affiliated with the family of Cytophagaceae.
The plant microbiome, also known as the phytomicrobiome, plays roles in plant health and productivity and has received significant attention in recent years. The microbiome has been defined as "a characteristic microbial community occupying a reasonably well-defined habitat which has distinct physio-chemical properties. The term thus not only refers to the microorganisms involved but also encompasses their theatre of activity".
References
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- ↑ Chelius, M. K. and E. W. Triplett (2000). "Dyadobacter fermentans gen. nov., sp. nov., a novel gram-negative bacterium isolated from surface-sterilized Zea mays stems." Int J Syst Evol Microbiol 50 Pt 2: 751-758
- ↑ Shen, L., et al. (2013). "Dyadobactertibetensis sp. nov., isolated from glacial ice core." Int J Syst Evol Microbiol 63(10): 3636-3639
- ↑ Chun, J., et al. (2013). "Dyadobacter jejuensis sp. nov., isolated from seawater." Int J Syst Evol Microbiol 63(5): 1788-1792
- ↑ Wang, L., et al. (2015). "Dyadobacter jiangsuensis sp. nov., a methyl red degrading bacterium isolated from a dye-manufacturing factory." Int J Syst Evol Microbiol 65(4): 1138-1143
- ↑ Liu, Q. M., et al. (2006). "Dyadobacter ginsengisoli sp. nov., isolated from soil of a ginseng field." Int J Syst Evol Microbiol 56(Pt 8): 1939-1944
- ↑ Manter, D. K., et al. (2010). "Pyrosequencing Reveals a Highly Diverse and Cultivar-Specific Bacterial Endophyte Community in Potato Roots." Microbial Ecology 60(1): 157-166
- ↑ Zhang, J., et al. (2012). "Isolation and characterization of plant growth-promoting rhizobacteria from wheat roots by wheat germ agglutinin labeled with fluorescein isothiocyanate." The Journal of Microbiology 50(2): 191-198
- ↑ Haichar, F. e. Z., et al. (2008). "Plant host habitat and root exudates shape soil bacterial community structure." ISME J 2(12): 1221-1230
- ↑ Reisberg, E. E., et al. (2012). "Phyllosphere bacterial communities of trichome-bearing and trichomeless Arabidopsis thaliana leaves." Antonie van Leeuwenhoek 101(3): 551-560
- ↑ Delmotte, N., et al. (2009). "Community proteogenomics reveals insights into the physiology of phyllosphere bacteria." Proc Natl Acad Sci U S A 106(38): 16428-16433
- ↑ Ali, N., et al. (2016). "Autochthonous bioaugmentation with environmental samples rich in hydrocarbonoclastic bacteria for bench-scale bioremediation of oily seawater and desert soil." Environmental Science and Pollution Research 23(9): 8686-8698
- ↑ Willumsen, P. A., et al. (2005). "Isolation and taxonomic affiliation of N-heterocyclic aromatic hydrocarbon-transforming bacteria." Applied Microbiology and Biotechnology 67(3): 420-428