NDUFB11

NDUFB11
Identifiers
Aliases	NDUFB11 , CI-ESSS, ESSS, NP17.3, Np15, P17.3, LSDMCA3, NADH:ubiquinone oxidoreductase subunit B11, MC1DN30
External IDs	OMIM: 300403 MGI: 1349919 HomoloGene: 10398 GeneCards: NDUFB11
Gene location (Human) Chr. X chromosome (human) [1] Band Xp11.3 Start 47,142,071 bp [1] End 47,145,466 bp [1]
Gene location (Mouse) Chr. X chromosome (mouse) [2] Band X|X A1.3 Start 20,481,565 bp [2] End 20,483,858 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in gastrocnemius muscle left ventricle right adrenal gland ganglionic eminence left adrenal gland right lobe of thyroid gland anterior pituitary right ventricle vastus lateralis muscle left lobe of thyroid gland Top expressed in temporal muscle digastric muscle sternocleidomastoid muscle interventricular septum triceps brachii muscle right ventricle plantaris muscle extensor digitorum longus muscle extraocular muscle thoracic diaphragm More reference expression data BioGPS More reference expression data
Gene ontology Molecular function protein binding Cellular component membrane respirasome mitochondrial respiratory chain complex I integral component of membrane mitochondrial inner membrane mitochondrion Biological process mitochondrial respiratory chain complex I assembly mitochondrial electron transport, NADH to ubiquinone Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 54539 104130 Ensembl ENSG00000147123 ENSMUSG00000031059 UniProt Q9NX14 O09111 RefSeq (mRNA) NM_019056 NM_001135998 NM_019435 NM_001358624 RefSeq (protein) NP_001129470 NP_061929 NP_062308 NP_001345553 Location (UCSC) Chr X: 47.14 – 47.15 Mb Chr X: 20.48 – 20.48 Mb PubMed search [3] [4]
Wikidata
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ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
Identifiers
Symbol	ESSS
Pfam	PF10183
InterPro	IPR019329
Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial (NADH-ubiquinone oxidoreductase ESSS subunit) is an enzyme that in humans is encoded by the NDUFB11 gene. ^{[5] [6] [7]} NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 11 is an accessory subunit of the NADH dehydrogenase (ubiquinone) complex, located in the mitochondrial inner membrane. It is also known as Complex I and is the largest of the five complexes of the electron transport chain. ^[8] NDUFB11 mutations have been associated with linear skin defects with multiple congenital anomalies 3 and mitochondrial complex I deficiency. ^[7]

Gene

The NDUFB11 gene is located on the p arm of chromosome X in position 11.23 and is 2,994 base pairs long. ^{[9] [10]}

Protein

The NDUFB11 protein weighs 17 kDa and is composed of 153 amino acids. ^{[9] [10]} NDUFB11 is a subunit of the enzyme NADH dehydrogenase (ubiquinone), the largest of the respiratory complexes.

Structure

The structure is L-shaped with a long, hydrophobic transmembrane domain and a hydrophilic domain for the peripheral arm that includes all the known redox centers and the NADH binding site. ^[8] It has been noted that the N-terminal hydrophobic domain has the potential to be folded into an alpha helix spanning the inner mitochondrial membrane with a C-terminal hydrophilic domain interacting with globular subunits of Complex I. The highly conserved two-domain structure suggests that this feature is critical for the protein function and that the hydrophobic domain acts as an anchor for the NADH dehydrogenase (ubiquinone) complex at the inner mitochondrial membrane. ^[7]

Function

The protein encoded by this gene is an accessory subunit of the multisubunit NADH:ubiquinone oxidoreductase (complex I) that is not directly involved in catalysis. Mammalian complex I is composed of 45 different subunits. It locates at the mitochondrial inner membrane. This protein complex has NADH dehydrogenase activity and oxidoreductase activity. It transfers electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Alternative splicing occurs at this locus and two transcript variants encoding distinct isoforms have been identified. ^[7] Initially, NADH binds to Complex I and transfers two electrons to the isoalloxazine ring of the flavin mononucleotide (FMN) prosthetic arm to form FMNH₂. The electrons are transferred through a series of iron-sulfur (Fe-S) clusters in the prosthetic arm and finally to coenzyme Q10 (CoQ), which is reduced to ubiquinol (CoQH₂). The flow of electrons changes the redox state of the protein, resulting in a conformational change and pK shift of the ionizable side chain, which pumps four hydrogen ions out of the mitochondrial matrix. ^[8]

Clinical significance

Mutations in the human gene are associated with linear skin defects with mitochondrial complex I deficiency and microphthalmia with linear skin defects syndrome. ^[7] Mitochondrial complex I deficiency is a disorder of the mitochondrial respiratory chain that causes a wide range of clinical manifestations from lethal neonatal disease to adult-onset neurodegenerative disorders. ^{[11] [12]} In cases of pathogenic NDUFB11 mutations, complex I deficiency with lactic acidosis and sideroblastic anemia has been found to occur. ^[13] Mutations in NDUFB11 have also been linked to microphthalmia with linear skin defects syndrome with neurological and cardiac abnormalities. ^[14]

Interactions

NDUFB11 has been shown to have 55 binary protein-protein interactions including 32 co-complex interactions. NDUFB11 appears to interact with FATE1, GPR42, CLDN7, GJB1, HIBADH, EBP, GPR152, GPR101, TIMMDC1, TIMMDC1, PPBP, and CRELD2. ^[15]

References

1. GRCh38: Ensembl release 89: ENSG00000147123 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000031059 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Cui Y, Yu L, Gong R, Zhang M, Fan Y, Yue P, Zhao S (June 1999). "Cloning and tissue expressional characterization of a full-length cDNA encoding human neuronal protein P17.3". Biochemical Genetics. 37 (5–6): 175–85. doi:10.1023/A:1018734605214. PMID   10544803. S2CID   35325476.
6. Carroll J, Shannon RJ, Fearnley IM, Walker JE, Hirst J (December 2002). "Definition of the nuclear encoded protein composition of bovine heart mitochondrial complex I. Identification of two new subunits". The Journal of Biological Chemistry. 277 (52): 50311–7. doi: 10.1074/jbc.M209166200 . PMID   12381726.
7. "Entrez Gene: NDUFB11 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa". This article incorporates text from this source, which is in the public domain .
8. Voet D, Voet JG, Pratt CW (2013). "Chapter 18". Fundamentals of biochemistry: life at the molecular level (4th ed.). Hoboken, NJ: Wiley. pp. 581–620. ISBN   978-0-470-54784-7.
9. Zong NC, Li H, Li H, Lam MP, Jimenez RC, Kim CS, et al. (October 2013). "Integration of cardiac proteome biology and medicine by a specialized knowledgebase". Circulation Research. 113 (9): 1043–53. doi:10.1161/CIRCRESAHA.113.301151. PMC   4076475 . PMID   23965338.
10. "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11". Cardiac Organellar Protein Atlas Knowledgebase (COPaKB).
11. "NDUFB11 - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial precursor - Homo sapiens (Human) - NDUFB11 gene & protein". www.uniprot.org. Retrieved 2018-08-24.  This article incorporates text available under the CC BY 4.0 license.
12. "UniProt: the universal protein knowledgebase". Nucleic Acids Research. 45 (D1): D158–D169. January 2017. doi:10.1093/nar/gkw1099. PMC   5210571 . PMID   27899622.
13. Torraco A, Bianchi M, Verrigni D, Gelmetti V, Riley L, Niceta M, et al. (March 2017). "A novel mutation in NDUFB11 unveils a new clinical phenotype associated with lactic acidosis and sideroblastic anemia". Clinical Genetics. 91 (3): 441–447. doi:10.1111/cge.12790. hdl: 11573/867520 . PMID   27102574. S2CID   5518038.
14. van Rahden VA, Fernandez-Vizarra E, Alawi M, Brand K, Fellmann F, Horn D, Zeviani M, Kutsche K (April 2015). "Mutations in NDUFB11, encoding a complex I component of the mitochondrial respiratory chain, cause microphthalmia with linear skin defects syndrome". American Journal of Human Genetics. 96 (4): 640–50. doi:10.1016/j.ajhg.2015.02.002. PMC   4385192 . PMID   25772934.
15. NDUFB11 "55 binary interactions found for search term NDUFB11". IntAct Molecular Interaction Database. EMBL-EBI. Retrieved 2018-08-25.{{cite web}}: Check |url= value (help)

Further reading

• Petruzzella V, Tessa A, Torraco A, Fattori F, Dotti MT, Bruno C, et al. (March 2007). "The NDUFB11 gene is not a modifier in Leber hereditary optic neuropathy". Biochemical and Biophysical Research Communications. 355 (1): 181–7. doi:10.1016/j.bbrc.2007.01.140. PMID   17292333.
• Kohda M, Tokuzawa Y, Kishita Y, Nyuzuki H, Moriyama Y, Mizuno Y, et al. (January 2016). "A Comprehensive Genomic Analysis Reveals the Genetic Landscape of Mitochondrial Respiratory Chain Complex Deficiencies". PLOS Genetics. 12 (1): e1005679. doi: 10.1371/journal.pgen.1005679 . PMC   4704781 . PMID   26741492.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.