Nidogen-1

Last updated
NID1
Protein NID1 PDB 1gl4.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases NID1 , NID, nidogen 1, entactin
External IDs OMIM: 131390 MGI: 97342 HomoloGene: 1878 GeneCards: NID1
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_002508

NM_010917

RefSeq (protein)

NP_002499

NP_035047

Location (UCSC) Chr 1: 235.98 – 236.07 Mb Chr 13: 13.61 – 13.69 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Nidogen-1 (NID-1), formerly known as entactin, is a protein that in humans is encoded by the NID1 gene. [5] [6] Both nidogen-1 and nidogen-2 are essential components of the basement membrane alongside other components such as type IV collagen, proteoglycans (heparan sulfate and glycosaminoglycans), laminin [7] and fibronectin. [8]

Contents

Function

Nidogen-1 is a member of the nidogen family of basement membrane glycoproteins. The protein interacts with several other components of basement membranes. Structurally it (along with perlecan) connects the networks formed by collagens and laminins to each other. [9] It may also play a role in cell interactions with the extracellular matrix. [10] [11]

Clinical significance

Mutations in NID1 cause autosomal dominant Dandy–Walker malformation with occipital encephalocele (ADDWOC). [12] [13]

Interactions

Nidogen-1 has been shown to interact with FBLN1. [14] [15] [16]

Related Research Articles

<span class="mw-page-title-main">Laminin</span> Protein in the extracellular matrix

Laminins are a family of glycoproteins of the extracellular matrix of all animals. They are major constituents of the basement membrane, namely the basal lamina. Laminins are vital to biological activity, influencing cell differentiation, migration, and adhesion.

Nidogens, formerly known as entactins, are a family of sulfated monomeric glycoproteins located in the basal lamina of parahoxozoans. Two nidogens have been identified in humans: nidogen-1 (NID1) and nidogen-2 (NID2). Remarkably, vertebrates are still capable of stabilizing basement membrane in the absence of either identified nidogen. In contrast, those lacking both nidogen-1 and nidogen-2 typically die prematurely during embryonic development as a result of defects existing in the heart and lungs. Nidogen have been shown to play a crucial role during organogenesis in late embryonic development, particularly in cardiac and lung development. From an evolutionary perspective, nidogens are highly conserved across vertebrates and invertebrates, retaining their ability to bind laminin.

<span class="mw-page-title-main">Fibulin</span>

Fibulin (FY-beau-lin) is the prototypic member of a multigene family, currently with seven members. Fibulin-1 is a calcium-binding glycoprotein. In vertebrates, fibulin-1 is found in blood and extracellular matrices. In the extracellular matrix, fibulin-1 associates with basement membranes and elastic fibers. The association with these matrix structures is mediated by its ability to interact with numerous extracellular matrix constituents including fibronectin, proteoglycans, laminins and tropoelastin. In blood, fibulin-1 binds to fibrinogen and incorporates into clots.

<span class="mw-page-title-main">FBLN1</span> Protein-coding gene in the species Homo sapiens

FBLN1 is the gene encoding fibulin-1, an extracellular matrix and plasma protein.

<span class="mw-page-title-main">Collagen, type IV, alpha 5</span> Protein-coding gene in humans

Collagen alpha-5(IV) chain is a protein that in humans is encoded by the COL4A5 gene.

<span class="mw-page-title-main">Collagen, type IV, alpha 3</span> Protein found in humans

Collagen alpha-3(IV) chain is a protein that in humans is encoded by the COL4A3 gene.

<span class="mw-page-title-main">Collagen, type IV, alpha 4</span> Protein found in humans

Collagen alpha-4(IV) chain is a protein that in humans is encoded by the COL4A4 gene.

<span class="mw-page-title-main">Laminin, alpha 5</span> Protein-coding gene in the species Homo sapiens

Laminin subunit alpha-5 is a protein that in humans is encoded by the LAMA5 gene.

<span class="mw-page-title-main">Collagen, type IV, alpha 2</span>

Collagen alpha-2(IV) chain is a protein that in humans is encoded by the COL4A2 gene.

<span class="mw-page-title-main">Laminin subunit gamma-2</span> Protein-coding gene in the species Homo sapiens

Laminin subunit gamma-2 is a protein that in humans is encoded by the LAMC2 gene.

<span class="mw-page-title-main">Laminin, alpha 3</span> Protein-coding gene in the species Homo sapiens

Laminin subunit alpha-3 is a protein that in humans is encoded by the LAMA3 gene.

<span class="mw-page-title-main">Collagen, type VI, alpha 1</span> Protein found in humans

Collagen alpha-1(VI) chain is a protein that in humans is encoded by the COL6A1 gene.

<span class="mw-page-title-main">Laminin subunit alpha-1</span> Protein-coding gene in the species Homo sapiens

Laminin subunit alpha-1 is a protein that in humans is encoded by the LAMA1 gene.

<span class="mw-page-title-main">Laminin subunit gamma-1</span> Protein-coding gene in the species Homo sapiens

Laminin subunit gamma-1 is a protein that in humans is encoded by the LAMC1 gene.

<span class="mw-page-title-main">Laminin, beta 1</span> Protein-coding gene in the species Homo sapiens

Laminin subunit beta-1 is a protein that in humans is encoded by the LAMB1 gene.

<span class="mw-page-title-main">Collagen, type IV, alpha 6</span> Mammalian protein found in humans

Collagen alpha-6(IV) chain is a protein that in humans is encoded by the COL4A6 gene.

<span class="mw-page-title-main">FBLN2</span> Protein-coding gene in the species Homo sapiens

Fibulin-2 is a protein that in humans is encoded by the FBLN2 gene.

<span class="mw-page-title-main">Laminin, beta 2</span> Protein-coding gene in the species Homo sapiens

Laminin subunit beta-2 is a protein that in humans is encoded by the LAMB2 gene.

<span class="mw-page-title-main">Nidogen-2</span> Protein-coding gene in the species Homo sapiens

Nidogen-2, also known as osteonidogen, is a basal lamina protein of the nidogen family. It was the second nidogen to be described after nidogen-1 (entactin). Both play key roles during late embryonic development. In humans it is encoded by the NID2 gene.

<span class="mw-page-title-main">Laminin subunit gamma-3</span> Protein-coding gene in the species Homo sapiens

Laminin subunit gamma-3 also known as LAMC3 is a protein that in humans is encoded by the LAMC3 gene.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000116962 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000005397 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Olsen DR, Nagayoshi T, Fazio M, Mattei MG, Passage E, Weil D, Timpl R, Chu ML, Uitto J (June 1989). "Human nidogen: cDNA cloning, cellular expression, and mapping of the gene to chromosome Iq43". Am. J. Hum. Genet. 44 (6): 876–85. PMC   1715653 . PMID   2471408.
  6. Zimmermann K, Hoischen S, Hafner M, Nischt R (May 1995). "Genomic sequences and structural organization of the human nidogen gene (NID)". Genomics. 27 (2): 245–50. doi:10.1006/geno.1995.1038. PMID   7557988.
  7. Smith J, Ockleford CD (January 1994). "Laser scanning confocal examination and comparison of nidogen (entactin) with laminin in term human amniochorion". Placenta. 15 (1): 95–106. doi:10.1016/S0143-4004(05)80240-1. PMID   8208674.
  8. Ockleford CD, Bright N, Hubbard A, D'Lacey C, Smith J, Gardiner L, Sheikh T, Albentosa M, Turtle K (October 1993). "Micro-Trabeculae, Macro-Plaques or Mini-Basement Membranes in Human Term Fetal Membranes?". Phil. Trans. R. Soc. Lond. B. 342 (1300): 121–136. doi:10.1098/rstb.1993.0142. PMID   7904354.
  9. Yurchenco PD, Patton BL (2009). "Developmental and pathogenic mechanisms of basement membrane assembly". Curr. Pharm. Des. 15 (12): 1277–94. doi:10.2174/138161209787846766. PMC   2978668 . PMID   19355968.
  10. "Entrez Gene: NID1 nidogen 1".
  11. Yi XY, Wayner EA, Kim Y, Fish AJ (March 1998). "Adhesion of cultured human kidney mesangial cells to native entactin: role of integrin receptors". Cell Adhes. Commun. 5 (3): 237–48. doi:10.3109/15419069809040294. PMID   9686320.
  12. "OMIM Entry - % 609222 - DANDY-WALKER MALFORMATION WITH OCCIPITAL CEPHALOCELE, AUTOSOMAL DOMINANT; ADDWOC". www.omim.org. Retrieved 2020-01-06.
  13. McNiven, Vanda; Ito, Yoko A.; Hartley, Taila; Kernohan, Kristin; Miller, Elka; Care4Rare Canada; Armour, Christine M. (May 2019). "NID1 variant associated with occipital cephaloceles in a family expressing a spectrum of phenotypes". American Journal of Medical Genetics. Part A. 179 (5): 837–841. doi:10.1002/ajmg.a.61095. ISSN   1552-4833. PMID   30773799. S2CID   73507129.{{cite journal}}: CS1 maint: numeric names: authors list (link)
  14. Adam S, Göhring W, Wiedemann H, Chu ML, Timpl R, Kostka G (September 1997). "Binding of fibulin-1 to nidogen depends on its C-terminal globular domain and a specific array of calcium-binding epidermal growth factor-like (EG) modules". J. Mol. Biol. 272 (2): 226–36. doi:10.1006/jmbi.1997.1244. PMID   9299350.
  15. Tran H, VanDusen WJ, Argraves WS (September 1997). "The self-association and fibronectin-binding sites of fibulin-1 map to calcium-binding epidermal growth factor-like domains". J. Biol. Chem. 272 (36): 22600–6. doi: 10.1074/jbc.272.36.22600 . PMID   9278415.
  16. Pan TC, Kluge M, Zhang RZ, Mayer U, Timpl R, Chu ML (August 1993). "Sequence of extracellular mouse protein BM-90/fibulin and its calcium-dependent binding to other basement-membrane ligands". Eur. J. Biochem. 215 (3): 733–40. doi: 10.1111/j.1432-1033.1993.tb18086.x . PMID   8354280.

Further reading