Pseudomonas is a genus of Gram-negative, Gammaproteobacteria, belonging to the family Pseudomonadaceae and containing 191 validly described species. The members of the genus demonstrate a great deal of metabolic diversity and consequently are able to colonize a wide range of niches. Their ease of culture in vitro and availability of an increasing number of Pseudomonas strain genome sequences has made the genus an excellent focus for scientific research; the best studied species include P. aeruginosa in its role as an opportunistic human pathogen, the plant pathogen P. syringae, the soil bacterium P. putida, and the plant growth-promoting P. fluorescens, P. lini, P. migulae, and P. graminis.
A polycyclic aromatic hydrocarbon (PAH) is a hydrocarbon—a chemical compound containing only carbon and hydrogen—that is composed of multiple aromatic rings. The group is a major subset of the aromatic hydrocarbons. The simplest of such chemicals are naphthalene, having two aromatic rings, and the three-ring compounds anthracene and phenanthrene. The terms polyaromatic hydrocarbon or polynuclear aromatic hydrocarbon are also used for this concept.
Pseudomonas alcaligenes is a Gram-negative aerobic bacterium used for bioremediation purposes of oil pollution, pesticide substances, and certain chemical substances, as it can degrade polycyclic aromatic hydrocarbons. It can be a human pathogen, but occurrences are very rare. Based on 16S rRNA analysis, P. alcaligenes has been placed in the P. aeruginosa group.
Pseudomonas stutzeri is a Gram-negative soil bacterium that is motile, has a single polar flagellum, and is classified as bacillus, or rod-shaped. While this bacterium was first isolated from human spinal fluid, it has since been found in many different environments due to its various characteristics and metabolic capabilities. P. stutzeri is an opportunistic pathogen in clinical settings, although infections are rare. Based on 16S rRNA analysis, this bacterium has been placed in the P. stutzeri group, to which it lends its name.
Delftia is a genus of Gram-negative bacteria that was first isolated from soil in Delft, Netherlands. The species is named after both the city, and in honor of pioneering research in the field of bacteriology that occurred in Delft. Cells in the genus Delftia are rod shaped and straight or slightly curved. Cells occur singly or in pairs, are 0.4–0.8ɥM wide and 2.5–4.1ɥM long. Delftia are motile by flagella, non-sporulating, and chemo-organotrophic.
"Aromatoleum" is a genus of proteobacteria capable of microbial biodegradation of organic pollutants. It has one single described species member, A. aromaticum, for which the only strain is strain EbN1.
Novosphingobium is a genus of Gram-negative bacteria that includes N. taihuense, which can degrade aromatic compounds such as phenol, aniline, nitrobenzene and phenanthrene. The species N. aromativorans, which was first found in Ulsan Bay, similarly degrades aromatic molecules of two to five rings.
Gallaecimonas is a recently described genus of bacteria. The first described species of this genus was Gallaecimonas pentaromativorans gen. nov., sp. nov. isolated by Rodríguez Blanco et al. in 2010 from intertidal sediments of the ria of Corcubión. It is a Gram-negative, rod-shaped, halotolerant bacterium in the class Gammaproteobacteria. It can degrade high molecular mass polycyclic aromatic hydrocarbons of 4 and 5 rings. The 16S rRNA gene sequences of the type strain CEE_131(T) proved to be distantly related to those of Rheinheimera and Serratia. Its G+C content was 41.7 mol%.
Delftia lacustris is a Gram-negative, nonfermentative, motile, rod-shaped bacterium from the family Comamonadaceae, which was isolated from mesotrophic lake water in Denmark. It has the ability to degrade peptidoglycan through chitinase and lysozyme activity.
Sphingomonas yanoikuyae is a short rod-shaped, strictly aerobic, Gram-negative, non-motile, non-spore-forming, chemoheterotrophic species of bacteria that is yellow or off-white in color. Its type strain is JCM 7371. It is notable for degrading a variety of aromatic compounds including biphenyl, naphthalene, phenanthrene, toluene, m-, and p-xylene. S. yanoikuyae was discovered by Brian Goodman on the southern coast of Papua New Guinea. However, Sphingomonas have a wide distribution across freshwater, seawater, and terrestrial habitats. This is due to the bacteria's ability to grow and survive under low-nutrient conditions as it can utilize a broad range of organic compounds.
Cycloclasticus pugetii is a species of bacteria, named in honor of Peter Puget. It is found in marine sediments. It is notable for being an aromatic hydrocarbon-degrading bacteria. It is aerobic, gram-negative, rod-shaped and motile by means of single polar flagella. Strain PS-1 is its type strain.
Alcanivorax pacificus is a pyrene-degrading marine gammaprotobacterium. It is of the genus Alcanivorax, a group of marine bacteria known for degrading hydrocarbons. When originally proposed, the genus Alcanivorax comprised six distinguishable species. However, A. pacificus, a seventh strain, was isolated from deep sea sediments in the West Pacific Ocean by Shanghai Majorbio Bio-pharm Technology Co., Ltd. in 2011. A. pacificus’s ability to degrade hydrocarbons can be employed for cleaning up oil-contaminated oceans through bioremediation. The genomic differences present in this strain of Alcanivorax that distinguish it from the original consortium are important to understand to better utilize this bacteria for bioremediation.
Syntrophobacter fumaroxidans is a species of syntrophic propionate-degrading sulfate-reducing bacterium. Strain MPOBT is the type strain. Its genome has been fully sequenced.
Sphingobium japonicum is a hexachlorocyclohexane-degrading bacteria with type strain MTCC 6362T. Its genome has been sequenced.
Marinobacter nanhaiticus is a Gram-negative, facultatively anaerobic and slightly halophilic bacterium from the genus of Marinobacter which has been isolated from sediments from the South China Sea. Marinobacter nanhaiticus has the ability to degrade polycyclic aromatic hydrocarbons.
Novosphingobium aromaticivorans is a species of bacteria. It is an aromatic compound-degrading bacteria, it is gram-negative, non-spore-forming, non-motile and rod-shaped. It is found in deep-terrestrial-subsurface sediments.
Arenibacter algicola is a Gram-negative, hydrocarbon-degrading and strictly aerobic bacterium from the genus of Arenibacter. Arenibacter algicola uses polycyclic aromatic hydrocarbons as only sources fore carbon and energy.
Novosphingobium indicum is a bacterium from the genus Novosphingobium which has been isolated from deep-sea water from the Indian Ocean. Novosphingobium indicum hasd the ability to degrade polycyclic aromatic hydrocarbon.
Gallaecimonas pentaromativorans is a Gram-negative, rod-shaped and halotolerant bacterium from the genus of Gallaecimonas which has been isolated from sediments of the Corcubion Ria in A Coruña in Spain.
Stenotrophomonas acidaminiphila is a strictly aerobic, Gram-negative, mesophilic, non-spore-forming and motile bacterium from the genus of Stenotrophomonas which has been isolated from industrial waste water in Mexico. Stenotrophomonas acidaminiphila can degrade polycyclic aromatic hydrocarbons.
