PCDH15

Last updated
PCDH15
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases PCDH15 , CDHR15, DFNB23, USH1F, protocadherin-related 15, protocadherin related 15
External IDs OMIM: 605514 MGI: 1891428 HomoloGene: 23401 GeneCards: PCDH15
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)
RefSeq (protein)
Location (UCSC) Chr 10: 53.8 – 55.63 Mb Chr 10: 73.1 – 74.65 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Protocadherin-15 is a protein that in humans is encoded by the PCDH15 gene. [5] [6] [7]

Function

This gene is a member of the cadherin superfamily. Family members encode integral membrane proteins that mediate calcium-dependent cell-cell adhesion. The protein product of this gene consists of a signal peptide, 11 extracellular calcium-binding domains, a transmembrane domain and a unique cytoplasmic domain. It plays an essential role in maintenance of normal retinal and cochlear function. [7] It is thought to interact with CDH23 to form tip-link filaments. [8]

Clinical significance

Mutations in this gene have been associated with hearing loss, which is consistent with its location at the Usher syndrome type 1F (USH1F) critical region on chromosome 10. [7] Variation within it has also been found to be associated with normal differences in human facial appearance. [9]

Related Research Articles

<span class="mw-page-title-main">Usher syndrome</span> Recessive genetic disorder causing deafblindness

Usher syndrome, also known as Hallgren syndrome, Usher–Hallgren syndrome, retinitis pigmentosa–dysacusis syndrome or dystrophia retinae dysacusis syndrome, is a rare genetic disorder caused by a mutation in any one of at least 11 genes resulting in a combination of hearing loss and visual impairment. It is a major cause of deafblindness and is at present incurable.

<span class="mw-page-title-main">USH2A</span> Protein-coding gene in the species Homo sapiens

Usherin is a protein that in humans is encoded by the USH2A gene.

<span class="mw-page-title-main">CLRN1</span>

Clarin-1 is a protein that in humans is encoded by the CLRN1 gene.

<span class="mw-page-title-main">USH1C</span>

Harmonin is a protein that in humans is encoded by the USH1C gene. It is expressed in sensory cells of the inner ear and retina, where it plays a role in hearing, balance, and vision. Mutations at the USH1C locus cause Usher syndrome type 1c and nonsyndromic sensorineural deafness.

<span class="mw-page-title-main">CDH23</span> Protein-coding gene in the species Homo sapiens

Cadherin-23 is a protein that in humans is encoded by the CDH23 gene.

<span class="mw-page-title-main">USH1G</span>

Usher syndrome type-1G protein is a protein that in humans is encoded by the USH1G gene.

<span class="mw-page-title-main">PCDH11X</span> Protein-coding gene in the species Homo sapiens

Protocadherin 11 X-linked, also known as PCDH11X, is a protein which in humans is encoded by the PCDH11X gene.

<span class="mw-page-title-main">PCDH1</span> Protein-coding gene in the species Homo sapiens

Protocadherin-1 is a protein that in humans is encoded by the PCDH1 gene.

<span class="mw-page-title-main">PCDHGC3</span> Protein-coding gene in the species Homo sapiens

Protocadherin gamma-C3 is a protein that in humans is encoded by the PCDHGC3 gene.

<span class="mw-page-title-main">PCDH8</span>

Protocadherin-8 is a protein that in humans is encoded by the PCDH8 gene.

<span class="mw-page-title-main">PCDH17</span>

Protocadherin-17 is a protein that in humans is encoded by the PCDH17 gene.

<span class="mw-page-title-main">PCDH10</span>

Protocadherin-10 is a protein that in humans is encoded by the PCDH10 gene.

<span class="mw-page-title-main">PCDH7</span>

Protocadherin-7 is a protein that in humans is encoded by the PCDH7 gene.

<span class="mw-page-title-main">PCDH12</span> Protein-coding gene in the species Homo sapiens

Protocadherin-12 is a protein that in humans is encoded by the PCDH12 gene.

<span class="mw-page-title-main">TMC1</span>

Transmembrane channel-like protein 1 is a protein that in humans is encoded by the TMC1 gene. TMC1 contains six transmembrane domains with both the C and N termini on the endoplasmic side of the membrane, as well as a large loop between domains 4 and 5. This topology is similar to that of transient receptor potential channels (TRPs), a family of proteins involved in the perception of senses such as temperature, taste, pressure, and vision. TMC1 has been located in the post-natal mouse cochlea, and knockouts for TMC1 and TMC2 result in both auditory and vestibular deficits indicating TMC1 is a molecular part of auditory transduction.

<span class="mw-page-title-main">MYO15A</span> Protein-coding gene in the species Homo sapiens

Myosin-XV is a protein that in humans is encoded by the MYO15A gene.

<span class="mw-page-title-main">PCDH18</span>

Protocadherin-18 is a protein that in humans is encoded by the PCDH18 gene.

<span class="mw-page-title-main">PCDH20</span>

Protocadherin-20 is a protein that in humans is encoded by the PCDH20 gene.

<span class="mw-page-title-main">FAT4</span>

Protocadherin Fat 4, also known as cadherin family member 14 (CDHF14) or FAT tumor suppressor homolog 4 (FAT4), is a protein that in humans is encoded by the FAT4 gene.

Protocadherin 19 is a protein belonging to the protocadherin family, which is part of the large cadherin superfamily of cell-adhesion proteins. The PCDH19 gene encoding the protein is located on the long arm of the X chromosome.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000150275 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000052613 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Ahmed ZM, Riazuddin S, Bernstein SL, Ahmed Z, Khan S, Griffith AJ, et al. (July 2001). "Mutations of the protocadherin gene PCDH15 cause Usher syndrome type 1F". American Journal of Human Genetics. 69 (1): 25–34. doi:10.1086/321277. PMC   1226045 . PMID   11398101.
  6. Ahmed ZM, Riazuddin S, Ahmad J, Bernstein SL, Guo Y, Sabar MF, et al. (December 2003). "PCDH15 is expressed in the neurosensory epithelium of the eye and ear and mutant alleles are responsible for both USH1F and DFNB23". Human Molecular Genetics. 12 (24): 3215–23. doi:10.1093/hmg/ddg358. PMID   14570705. S2CID   14028314.
  7. 1 2 3 "Entrez Gene: PCDH15 protocadherin 15".
  8. Kazmierczak P, Sakaguchi H, Tokita J, Wilson-Kubalek EM, Milligan RA, Müller U, Kachar B (September 2007). "Cadherin 23 and protocadherin 15 interact to form tip-link filaments in sensory hair cells". Nature. 449 (7158): 87–91. Bibcode:2007Natur.449...87K. doi:10.1038/nature06091. PMID   17805295. S2CID   4414814.
  9. Crouch DJ, Winney B, Koppen WP, Christmas WJ, Hutnik K, Day T, et al. (January 2018). "Genetics of the human face: Identification of large-effect single gene variants". Proceedings of the National Academy of Sciences of the United States of America. 115 (4): E676–E685. doi: 10.1073/pnas.1708207114 . PMC   5789906 . PMID   29301965.

Further reading