Potato spindle tuber viroid

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Potato spindle tuber viroid
Virus classification OOjs UI icon edit-ltr.svg
(unranked): Viroid
Family: Pospiviroidae
Genus: Pospiviroid
Species:
Potato spindle tuber viroid
Strains
  • PSTVd:avocado
  • PSTVd:pepino
  • PSTVd:Solanum

The potato spindle tuber viroid (PSTVd, Pospiviroid fusituberis) was the first viroid to be identified. [1] [2] [3] [4] PSTVd is a small, single stranded circular RNA molecule [5] closely related to the chrysanthemum stunt viroid. Present within the viroidal RNA is the Pospiviroid RY motif stem loop common to its genus. The natural hosts are potatoes (Solanum tuberosum) and tomatoes (Solanum lycopersicum). All potatoes and tomatoes are susceptible to PSTVd and there is no form of natural resistance. Natural infections have also been seen in avocados and infections in other solanaceous crops have been induced in the laboratory. Until 2017 PSTVd was thought to be unable to infect Solanum sisymbriifolium . [6] Then in May seeds exported by a Dutch company were noticed to be infected. [6] These seeds were shipped from the company, but had been originally bred to their specifications in two Asian countries. [6] Pstv also causes Tomato bunchy top and is seed transmitted in tomato. [7] it contains single stranded RNA without protein coat.

Contents

Discovery

It was discovered by Theodor Otto Diener, who is a plant pathologist at the U.S Department of Agriculture's Research Center in Beltsville, Maryland, and discovered it in 1971. He named it viroid because it is 1/80th size of a virus. [3]

Strains and their symptoms

Different strains of PSTVd exist and symptoms range from mild to severe. [8] Mild strains produce no obvious symptoms. Symptoms in severe strains are dependent on environmental conditions and are most severe in hot conditions. [9] Symptoms may be mild in initial infections but become progressively worse in the following generations. Common symptoms of severe infections include color changes in the foliage, smaller leaves and spindle-like elongation. Sprouting also occurs at a slower rate than in unaffected potatoes. [10] Infected tomatoes are slower to show symptoms which include stunted growth with a ‘bunchy top’ caused by shortened inter-nodes. Leaves become yellow or purple and often become curled and twisted. Necrosis eventually occurs in the veins of the bottom and middle leaves and the top leaves decrease in size. Fruit ripening is also affected leading to hard, small, dark green tomatoes.

Long distance spread of PSTVd usually occurs via infected seeds but transmission via aphids ( Myzus persicae ) also occurs but only in the presence of PLRV (potato leaf roll virus). Mechanical transmission also occurs once it has been introduced to an area.

Primary and secondary structure of PSTVd

PSTVd comprises 359 nucleotides.

Primary Structure
  1   CGGAACUAAA CUCGUGGUUC CUGUGGUUCA CACCUGACCU CCUGAGCAGA AAAGAAAAAA  61   GAAGGCGGCU CGGAGGAGCG CUUCAGGGAU CCCCGGGGAA ACCUGGAGCG AACUGGCAAA 121   AAAGGACGGU GGGGAGUGCC CAGCGGCCGA CAGGAGUAAU UCCCGCCGAA ACAGGGUUUU 181   CACCCUUCCU UUCUUCGGGU GUCCUUCCUC GCGCCCGCAG GACCACCCCU CGCCCCCUUU 241   GCGCUGUCGC UUCGGCUACU ACCCGGUGGA AACAACUGAA GCUCCCGAGA ACCGCUUUUU 301   CUCUAUCUUA CUUGCUUCGG GGCGAGGGUG UUUAGCCCUU GGAACCGCAG UUGGUUCCU
Secondary Structure
Putative secondary structure of the PSTVd viroid. The highlighted nucleotides are found in most other viroids. PSTviroid.png
Putative secondary structure of the PSTVd viroid. The highlighted nucleotides are found in most other viroids.

Course of infection

Systemic movement within the infected host is through the phloem. [D 1]

Related Research Articles

Viroids are small single-stranded, circular RNAs that are infectious pathogens. Unlike viruses, they have no protein coating. All known viroids are inhabitants of angiosperms, and most cause diseases, whose respective economic importance to humans varies widely. A recent metatranscriptomics study suggests that the host diversity of viroids and other viroid-like elements is broader than previously thought and that it would not be limited to plants, encompassing even the prokaryotes.

Virusoids are circular single-stranded RNA(s) dependent on viruses for replication and encapsidation. The genome of virusoids consists of several hundred (200–400) nucleotides and does not code for any proteins.

<span class="mw-page-title-main">Theodor Otto Diener</span> American plant pathologist (1921–2023)

Theodor Otto Diener was a Swiss-American plant pathologist. In 1971, he discovered that the causative agent of the potato spindle tuber disease is not a virus, but a novel agent, which consists solely of a short strand of single-stranded RNA without a protein capsid, eighty times smaller than the smallest viruses. He proposed to name it, and similar agents yet to be discovered, viroids. Viroids displaced viruses as the smallest known infectious agents.

Pospiviroid is a genus of ssRNA viroids that infects plants, most commonly tubers. It belongs to the family Pospiviroidae. The first viroid discovered was a pospiviroid, the PSTVd species.

The Pospiviroidae are a incertae sedis family of ssRNA viroids with 5 genera and 39 species, including the first viroid to be discovered, PSTVd, which is part of genus Pospiviroid. Their secondary structure is key to their biological activity. The classification of this family is based on differences in the conserved central region sequence. Pospiviroidae replication occurs in an asymmetric fashion via host cell RNA polymerase, RNase, and RNA ligase. Its hosts are plants, specifically dicotyledons and some monocotyledons. The severity of the infection can vary from no effect to devastating and widespread damage to a population. This can also depend on the virus-host combination.

<span class="mw-page-title-main">Plum pox</span> Viral plant disease

Plum pox, also known as sharka, is the most devastating viral disease of stone fruit from the genus Prunus. The disease is caused by the plum pox virus (PPV), and the different strains may infect a variety of stone fruit species including peaches, apricots, plums, nectarine, almonds, and sweet and tart cherries. Wild and ornamental species of Prunus may also become infected by some strains of the virus.

<i>Potyvirus</i> Genus of positive-strand RNA viruses in the family Potyviridae

Potyvirus is a genus of positive-strand RNA viruses in the family Potyviridae. Plants serve as natural hosts. Like begomoviruses, members of this genus may cause significant losses in agricultural, pastoral, horticultural, and ornamental crops. More than 200 species of aphids spread potyviruses, and most are from the subfamily Aphidinae. The genus contains 190 species and potyviruses account for about thirty percent of all currently known plant viruses.

<i>Potato leafroll virus</i> Species of virus

Potato leafroll virus (PLRV) is a member of the genus Polerovirus and family Solemoviridae. The phloem limited positive sense RNA virus infects potatoes and other members of the family Solanaceae. PLRV was first described by Quanjer et al. in 1916. PLRV is transmitted by aphids, primarily the green peach aphid, Myzus persicae. PLRV is one of the most important potato viruses worldwide but particularly devastating in countries with limited resources and management. It can be responsible for individual plant yield losses of over 50%. One estimate suggests that PLRV is responsible for an annual global yield loss of 20 million tons. Symptoms include chlorosis, necrosis and leaf curling.

Non-cellular life, also known as acellular life, is life that exists without a cellular structure for at least part of its life cycle. Historically, most definitions of life postulated that an organism must be composed of one or more cells, but, for some, this is no longer considered necessary, and modern criteria allow for forms of life based on other structural arrangements.

Citrus tristeza virus (CTV) is a viral species of the genus Closterovirus that causes the most economically damaging disease to its namesake plant genus, Citrus. The disease has led to the death of millions of Citrus trees all over the world and has rendered millions of others useless for production. Farmers in Brazil and other South American countries gave it the name "tristeza", meaning sadness in Portuguese and Spanish, referring to the devastation produced by the disease in the 1930s. The virus is transmitted most efficiently by the brown citrus aphid.

<i>Alfalfa mosaic virus</i> Species of virus

Alfalfa mosaic virus (AMV), also known as Lucerne mosaic virus or Potato calico virus, is a worldwide distributed phytopathogen that can lead to necrosis and yellow mosaics on a large variety of plant species, including commercially important crops. It is the only Alfamovirus of the family Bromoviridae. In 1931 Weimer J.L. was the first to report AMV in alfalfa. Transmission of the virus occurs mainly by some aphids, by seeds or by pollen to the seed.

Rice hoja blanca tenuivirus (RHBV), Spanish for "white leaf rice virus", is a plant virus in the family Phenuiviridae. RHBV causes Hoja blanca disease (HBD), which affects the leaves of the rice plant Oryza sativa, stunting the growth of the plant or killing it altogether. RHBV is carried by an insect vector, Tagosodes orizicolus, a type of planthopper. The virus is found in South America, Mexico, throughout Central America, the Caribbean region, and the southern United States. In South America, the disease is endemic to Colombia, Venezuela, Ecuador, Peru, Suriname, French Guiana and Guyana.

<i>Cucumber mosaic virus</i> Species of virus

Cucumber mosaic virus (CMV) is a plant pathogenic virus in the family Bromoviridae. This virus has a worldwide distribution and a very wide host range, having the reputation of the widest host range of any known plant virus. It can be transmitted from plant to plant both mechanically by sap and by aphids in a stylet-borne fashion. It can also be transmitted in seeds and by the parasitic weeds, Cuscuta sp. (dodder).

Potato mop-top virus (PMTV) is a plant pathogenic virus transmitted through the vector Spongospora subterranea that affects potatoes. PMTV belongs to family of Virgaviridae, and the genus Pomovirus. The virus was first identified in 1966 by Calvert and Harrison in Britain, and is now reported in many other potato cultivating regions of the world including U.S.A., Canada, China, Pakistan, Japan, South American countries and many parts of Europe. Many disease management systems have been found to be ineffective against the virus, although a combination of sanitation and vector controls seems to work well.

Potato virus X (PVX) is a plant pathogenic virus of the family Alphaflexiviridae and the order Tymovirales.

Potato virus Y (PVY) is a plant pathogenic virus of the family Potyviridae, and one of the most important plant viruses affecting potato production.

<span class="mw-page-title-main">Plant disease resistance</span> Ability of plants to withstand pathogens

Plant disease resistance protects plants from pathogens in two ways: by pre-formed structures and chemicals, and by infection-induced responses of the immune system. Relative to a susceptible plant, disease resistance is the reduction of pathogen growth on or in the plant, while the term disease tolerance describes plants that exhibit little disease damage despite substantial pathogen levels. Disease outcome is determined by the three-way interaction of the pathogen, the plant, and the environmental conditions.

Citrus exocortis is a disease of citrus plants, caused by the Citrus exocortis viroid. It can cause stunted growth and reduced yields in affected plants. The disease is also sometimes called "scalybutt". CEVd can also infect tomato plants. The resulting disease is sometimes called "tomato bunchy top disease".

Cadang-cadang is a disease caused by Coconut cadang-cadang viroid, a lethal viroid of several palms including coconut, African oil palm, anahaw, and buri. The name cadang-cadang comes from the word gadang-gadang that means dying in Bicol. It was originally reported on San Miguel Island in the Philippines in 1927/1928. "By 1962, all but 100 of 250,000 palms on this island had died from the disease," indicating an epidemic. Every year one million coconut palms are killed by CCCVd and over 30 million coconut palms have been killed since Cadang-cadang was discovered. CCCVd directly affects the production of copra, a raw material for coconut oil and animal feed. Total losses of about 30 million palms and annual yield losses of about 22,000 metric tons of copra have been attributed to Cadang-cadang disease in the Philippines.

<span class="mw-page-title-main">Viral diseases of potato</span> Group of diseases affecting potato plants

Viral diseases of potato are a group of diseases caused by different types of Viruses that affect potato crops worldwide and, although they do not affect human or animal health since they are viruses that only infect vegetables, they are a source of great economic losses annually. About 28 viruses have been reported infecting potato crops. However, potato virus X (PVX), potato virus Y (PVY), and potato leafroll virus (PLRV) are the most important viruses worldwide. Some others are of economic importance only in some regions. Such is the case of potato virus M (PVM) in some Asian and European countries.

References

  1. Diener TO (August 1971). "Potato spindle tuber "virus". IV. A replicating, low molecular weight RNA". Virology. 45 (2): 411–28. doi:10.1016/0042-6822(71)90342-4. PMID   5095900.
  2. "ARS Research Timeline - Tracking the Elusive Viroid". 2006-03-02. Retrieved 2007-07-18.
  3. 1 2 Discovery of Viroids Archived 2016-03-03 at the Wayback Machine
  4. Zimmer, Carl (September 25, 2014). "A Tiny Emissary From the Ancient Past". New York Times . Retrieved September 26, 2014.
  5. Sanger, H.L. (1982). "Biology, Structure, Functions and Possible Origin of Viroids" (PDF). Nucleic Acids and Proteins in Plants II : Structure, Biochemistry and Physiology of Nucleic Acids. Berlin, Heidelberg: Springer Berlin Heidelberg. p. 383. doi:10.1007/978-3-642-68347-3_12. ISBN   978-3-642-68349-7 . Retrieved 13 March 2019.
  6. 1 2 3 "First finding of Potato spindle tuber viroid (PSTVd) in seeds of Solanum sisymbriifolium, originating in Asia - June 2017". Netherlands Food and Consumer Product Safety Authority . 2017-06-28. Retrieved 2020-11-30.
  7. Mink, G. I. (1993). "Pollen and Seed-Transmitted Viruses and Viroids". Annual Review of Phytopathology . 31 (1). Annual Reviews: 375–402. doi:10.1146/annurev.py.31.090193.002111. ISSN   0066-4286. PMID   18643763.
  8. Itaya, Asuka; Matsuda, Yoshie; Gonzales, Robert A.; Nelson, Richard S.; Ding, Biao (October 2002). "Potato spindle tuber viroid Strains of Different Pathogenicity Induces and Suppresses Expression of Common and Unique Genes in Infected Tomato". Molecular Plant-Microbe Interactions. 15 (10): 990–999. doi:10.1094/mpmi.2002.15.10.990. ISSN   0894-0282. PMID   12437296.
  9. Carbonell, Alberto; Martínez de Alba, Ángel-Emilio; Flores, Ricardo; Gago, Selma (February 2008). "Double-stranded RNA interferes in a sequence-specific manner with the infection of representative members of the two viroid families". Virology. 371 (1): 44–53. doi:10.1016/j.virol.2007.09.031. hdl: 10261/343165 . PMID   18028975.
  10. "Disease profile: Potato Spindle Tuber Viroid". AUSVEG. 2021-10-04. Retrieved 2024-12-09.
  1. p. 114, "Long-Distance Trafficking In the first experimental investigation on viroid systemic movement within an infected plant, Palukaitis (99) showed that PSTVd moved from a photoassimilate-source leaf into sink organs in a pattern consistent with phloem transport. This was supported by in situ localization of PSTVd in the phloem (144)."

Bibliography