Acid rain is rain or any other form of precipitation that is unusually acidic, meaning that it has elevated levels of hydrogen ions. Most water, including drinking water, has a neutral pH that exists between 6.5 and 8.5, but acid rain has a pH level lower than this and ranges from 4–5 on average. The more acidic the acid rain is, the lower its pH is. Acid rain can have harmful effects on plants, aquatic animals, and infrastructure. Acid rain is caused by emissions of sulfur dioxide and nitrogen oxide, which react with the water molecules in the atmosphere to produce acids.
In classical soil science, humus is the dark organic matter in soil that is formed by the decomposition of plant and animal matter. It is a kind of soil organic matter. It is rich in nutrients and retains moisture in the soil. Humus is the Latin word for "earth" or "ground".
Soil, also commonly referred to as earth or dirt, is a mixture of organic matter, minerals, gases, liquids, and organisms that together support the life of plants and soil organisms. Some scientific definitions distinguish dirt from soil by restricting the former term specifically to displaced soil.
Soil pH is a measure of the acidity or basicity (alkalinity) of a soil. Soil pH is a key characteristic that can be used to make informative analysis both qualitative and quantitatively regarding soil characteristics. pH is defined as the negative logarithm (base 10) of the activity of hydronium ions in a solution. In soils, it is measured in a slurry of soil mixed with water, and normally falls between 3 and 10, with 7 being neutral. Acid soils have a pH below 7 and alkaline soils have a pH above 7. Ultra-acidic soils and very strongly alkaline soils are rare.
Abscisic acid is a plant hormone. ABA functions in many plant developmental processes, including seed and bud dormancy, the control of organ size and stomatal closure. It is especially important for plants in the response to environmental stresses, including drought, soil salinity, cold tolerance, freezing tolerance, heat stress and heavy metal ion tolerance.
Pythium is a genus of parasitic oomycetes. They were formerly classified as fungi. Most species are plant parasites, but Pythium insidiosum is an important pathogen of animals, causing pythiosis. The feet of the fungus gnat are frequently a vector for their transmission.
Soil acidification is the buildup of hydrogen cations, which reduces the soil pH. Chemically, this happens when a proton donor gets added to the soil. The donor can be an acid, such as nitric acid, sulfuric acid, or carbonic acid. It can also be a compound such as aluminium sulfate, which reacts in the soil to release protons. Acidification also occurs when base cations such as calcium, magnesium, potassium and sodium are leached from the soil.
Environmental soil science is the study of the interaction of humans with the pedosphere as well as critical aspects of the biosphere, the lithosphere, the hydrosphere, and the atmosphere. Environmental soil science addresses both the fundamental and applied aspects of the field including: buffers and surface water quality, vadose zone functions, septic drain field site assessment and function, land treatment of wastewater, stormwater, erosion control, soil contamination with metals and pesticides, remediation of contaminated soils, restoration of wetlands, soil degradation, nutrient management, movement of viruses and bacteria in soils and waters, bioremediation, application of molecular biology and genetic engineering to development of soil microbes that can degrade hazardous pollutants, land use, global warming, acid rain, and the study of anthropogenic soils, such as terra preta. Much of the research done in environmental soil science is produced through the use of models.
Bacillus amyloliquefaciens is a species of bacterium in the genus Bacillus that is the source of the BamHI restriction enzyme. It also synthesizes a natural antibiotic protein barnase, a widely studied ribonuclease that forms a famously tight complex with its intracellular inhibitor barstar, and plantazolicin, an antibiotic with selective activity against Bacillus anthracis.
Mortierella species are soil fungi belonging to the order Mortierellales within the subphylum Mortierellomycotina. The widespread genus contains about 85 species.
Pythium ultimum is a plant pathogen. It causes damping off and root rot diseases of hundreds of diverse plant hosts including corn, soybean, potato, wheat, fir, and many ornamental species. P. ultimum belongs to the peronosporalean lineage of oomycetes, along with other important plant pathogens such as Phytophthora spp. and many genera of downy mildews. P. ultimum is a frequent inhabitant of fields, freshwater ponds, and decomposing vegetation in most areas of the world. Contributing to the widespread distribution and persistence of P. ultimum is its ability to grow saprotrophically in soil and plant residue. This trait is also exhibited by most Pythium spp. but not by the related Phytophthora spp., which can only colonize living plant hosts.
Pythium graminicola is a plant pathogen infecting cereals.
Pythium myriotylum is a soil-borne oomycete necrotroph that has a broad host range, this means that it can infect a wide range of plants.
Pythium dissotocum is a plant pathogen infecting strawberry and rice.
Pythium sulcatum is a chromalveolate plant pathogen infecting carrots. Because this organism was once thought to be a type of fungus, it is still often treated as such.
Pythium violae is a plant pathogen infecting carrots. It is a soil-borne oomycete that causes the cavity spot disease of carrots. Pythium sulcatum also causes a less serious form of this disease. Pythium violae causes elliptical shaped brown lesions surrounded by a thin yellow halo on the surface of the taproot. These lesions cause a blemished aesthetic appearance on the carrot, reducing their market value while maintaining yield. The lesions are, on average, less than half an inch in diameter and appear near harvest, but can grow as the carrot matures and grow larger on processing varieties of carrots. Low density hyphae are present in early formation of the lesions, but there is little to no presence of Pythium violae spores in the mature lesions making it difficult to diagnose in the field. This disease can be instigated by excessive rainfall, poor soil drainage, cool temperatures, and low Soil pH. Pythium violae has been shown to infect and produce similar necrotic lesions on other hosts such as alfalfa, wheat, and broccoli. However, no economic loss has been reported from these alternate host infections.
Acid-sensing ion channel 3 (ASIC3) also known as amiloride-sensitive cation channel 3 (ACCN3) or testis sodium channel 1 (TNaC1) is a protein that in humans is encoded by the ASIC3 gene. The ASIC3 gene is one of the five paralogous genes that encode proteins that form trimeric acid-sensing ion channels (ASICs) in mammals. The cDNA of this gene was first cloned in 1998. The ASIC genes have splicing variants that encode different proteins that are called isoforms.
Pythium insidiosum is a species of Pythium and a member of the class oomycota. Pythium insidiosum is mainly found in standing water and occasionally soil. Unlike most Pythium species, which are generally pathogens of terrestrial plants, Pythium insidiosum is a pathogen of mammals. It causes pythiosis, mainly in horses, dogs, and humans. It can also cause disease in cats. It is a non-transmissible disease and occurs mainly in tropical climate, endemic to Thailand, affecting mainly humans and horses and in Brazil, affecting mainly horses. Infection can occur in healthy mammals. The pathogen is well-adapted to mammalian body temperature, with an optimum temperature for growth of 34–36 °C (93–97 °F).
Teixobactin is a peptide-like secondary metabolite of some species of bacteria, that kills some gram-positive bacteria. It appears to belong to a new class of antibiotics, and harms bacteria by binding to lipid II and lipid III, important precursor molecules for forming the cell wall.
