Rhizophagus clarus | |
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Scientific classification | |
Domain: | Eukaryota |
Kingdom: | Fungi |
Division: | Glomeromycota |
Class: | Glomeromycetes |
Order: | Glomerales |
Family: | Glomeraceae |
Species: | R. clarus |
Binomial name | |
Rhizophagus clarus (T.H. Nicolson & N.C. Schenck) C. Walker & A. Schüßler | |
Synonyms | |
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Rhizophagus clarus (previously known as Glomus clarum [1] ) is an arbuscular mycorrhizal fungus in the family Glomeraceae. The species has been shown to improve nutrient absorption and growth in several agricultural crops but is not typically applied commercially. [2]
Rhizophagus clarus is widely distributed and found worldwide. [3] The species is proposed to be at the level of Least Concern on the IUCN Red List due to its global distribution. [4]
The spores of Rhizophagus clarus vary in color from white to yellow-brown. [5] [6] [7] They naturally vary in size from 100 to 260 µm and are globose to subglobose in shape. [5] [6] The spores are larger than the spores of other species in the genus Rhizophagus. [8] The spores are composed of an outer mucilaginous layer which thickens as they mature. [6] [8]
Rhizophagus clarus is composed of extraradical hyphae that extend past the rhizosphere soil zone, and intraradical hyphae that inhabit the host plant's roots. [9]
Rhizophagus clarus is a biotrophic mutualist fungus that exchanges soil nutrients with its host plant for photoassimilates. [10]
Rhizophagus clarus is able to form a symbiotic relationship with a wide variety of plant hosts, some of which include:
Rhizophagus clarus has a relatively small number of genes coding for cell wall degrading enzymes because the species is mutualistic and not pathogenic. [8] Effector molecules secreted by the fungus affect plant signaling and immune function to promote fungal colonization. [10] Hyphal anastomosis is common in colonies of Rhizophagus clarus and allows for horizontal gene transfer and increased variation in genotypes. [9]
Mycelium is a root-like structure of a fungus consisting of a mass of branching, thread-like hyphae. Its normal form is that of branched, slender, entangled, anastomosing, hyaline threads. Fungal colonies composed of mycelium are found in and on soil and many other substrates. A typical single spore germinates into a monokaryotic mycelium, which cannot reproduce sexually; when two compatible monokaryotic mycelia join and form a dikaryotic mycelium, that mycelium may form fruiting bodies such as mushrooms. A mycelium may be minute, forming a colony that is too small to see, or may grow to span thousands of acres as in Armillaria.
A hypha is a long, branching, filamentous structure of a fungus, oomycete, or actinobacterium. In most fungi, hyphae are the main mode of vegetative growth, and are collectively called a mycelium.
A mycorrhiza is a symbiotic association between a fungus and a plant. The term mycorrhiza refers to the role of the fungus in the plant's rhizosphere, its root system. Mycorrhizae play important roles in plant nutrition, soil biology, and soil chemistry.
An arbuscular mycorrhiza (AM) is a type of mycorrhiza in which the symbiont fungus penetrates the cortical cells of the roots of a vascular plant forming arbuscules. Arbuscular mycorrhiza is a type of endomycorrhiza along with ericoid mycorrhiza and orchid mycorrhiza. They are characterized by the formation of unique tree-like structures, the arbuscules. In addition, globular storage structures called vesicles are often encountered.
Root hair, or absorbent hairs, are outgrowths of epidermal cells, specialized cells at the tip of a plant root. They are lateral extensions of a single cell and are only rarely branched. They are found in the region of maturation, of the root. Root hair cells improve plant water absorption by increasing root surface area to volume ratio which allows the root hair cell to take in more water. The large vacuole inside root hair cells makes this intake much more efficient. Root hairs are also important for nutrient uptake as they are main interface between plants and mycorrhizal fungi.
Mycoremediation is a form of bioremediation in which fungi-based remediation methods are used to decontaminate the environment. Fungi have been proven to be a cheap, effective and environmentally sound way for removing a wide array of contaminants from damaged environments or wastewater. These contaminants include heavy metals, organic pollutants, textile dyes, leather tanning chemicals and wastewater, petroleum fuels, polycyclic aromatic hydrocarbons, pharmaceuticals and personal care products, pesticides and herbicides in land, fresh water, and marine environments.
Glomeromycota are one of eight currently recognized divisions within the kingdom Fungi, with approximately 230 described species. Members of the Glomeromycota form arbuscular mycorrhizas (AMs) with the thalli of bryophytes and the roots of vascular land plants. Not all species have been shown to form AMs, and one, Geosiphon pyriformis, is known not to do so. Instead, it forms an endocytobiotic association with Nostoc cyanobacteria. The majority of evidence shows that the Glomeromycota are dependent on land plants for carbon and energy, but there is recent circumstantial evidence that some species may be able to lead an independent existence. The arbuscular mycorrhizal species are terrestrial and widely distributed in soils worldwide where they form symbioses with the roots of the majority of plant species (>80%). They can also be found in wetlands, including salt-marshes, and associated with epiphytic plants.
Glomus aggregatum is an arbuscular mycorrhizal fungus used as a soil inoculant in agriculture and horticulture. Like other species in this phylum it forms obligate symbioses with plant roots, where it obtains carbon (photosynthate) from the host plant in exchange for nutrients and other benefits.
Glomus is a genus of arbuscular mycorrhizal (AM) fungi, and all species form symbiotic relationships (mycorrhizae) with plant roots. Glomus is the largest genus of AM fungi, with ca. 85 species described, but is currently defined as non-monophyletic.
The mycorrhizosphere is the region around a mycorrhizal fungus in which nutrients released from the fungus increase the microbial population and its activities. The roots of most terrestrial plants, including most crop plants and almost all woody plants, are colonized by mycorrhiza-forming symbiotic fungi. In this relationship, the plant roots are infected by a fungus, but the rest of the fungal mycelium continues to grow through the soil, digesting and absorbing nutrients and water and sharing these with its plant host. The fungus in turn benefits by receiving photosynthetic sugars from its host. The mycorrhizosphere consists of roots, hyphae of the directly connected mycorrhizal fungi, associated microorganisms, and the soil in their direct influence.
An ectomycorrhiza is a form of symbiotic relationship that occurs between a fungal symbiont, or mycobiont, and the roots of various plant species. The mycobiont is often from the phyla Basidiomycota and Ascomycota, and more rarely from the Zygomycota. Ectomycorrhizas form on the roots of around 2% of plant species, usually woody plants, including species from the birch, dipterocarp, myrtle, beech, willow, pine and rose families. Research on ectomycorrhizas is increasingly important in areas such as ecosystem management and restoration, forestry and agriculture.
Rhizophagus is a genus of arbuscular mycorrhizal (AM) fungi that form symbiotic relationships (mycorrhizas) with plant roots. The genome of Rhizophagus irregularis was recently sequenced.
Rhizophagus irregularis is an arbuscular mycorrhizal fungus used as a soil inoculant in agriculture and horticulture. Rhizophagus irregularis is also commonly used in scientific studies of the effects of arbuscular mycorrhizal fungi on plant and soil improvement. Until 2001, the species was known and widely marketed as Glomus intraradices, but molecular analysis of ribosomal DNA led to the reclassification of all arbuscular fungi from Zygomycota phylum to the Glomeromycota phylum.
Penicillium thomii is an anamorph species of fungus in the genus Penicillium which was isolated from spoiled faba beans in Australia. Penicillium thomii produces hadicidine, 6-methoxymelline and penicillic acid
Orchid mycorrhizae are endomycorrhizal fungi which develop symbiotic relationships with the roots and seeds of plants of the family Orchidaceae. Nearly all orchids are myco-heterotrophic at some point in their life cycle. Orchid mycorrhizae are critically important during orchid germination, as an orchid seed has virtually no energy reserve and obtains its carbon from the fungal symbiont.
Mycorrhiza helper bacteria (MHB) are a group of organisms that form symbiotic associations with both ectomycorrhiza and arbuscular mycorrhiza. MHBs are diverse and belong to a wide variety of bacterial phyla including both Gram-negative and Gram-positive bacteria. Some of the most common MHBs observed in studies belong to the phylas Pseudomonas and Streptomyces. MHBs have been seen to have extremely specific interactions with their fungal hosts at times, but this specificity is lost with plants. MHBs enhance mycorrhizal function, growth, nutrient uptake to the fungus and plant, improve soil conductance, aid against certain pathogens, and help promote defense mechanisms. These bacteria are naturally present in the soil, and form these complex interactions with fungi as plant root development starts to take shape. The mechanisms through which these interactions take shape are not well-understood and needs further study.
Mucoromycota is a division within the kingdom fungi. It includes a diverse group of various molds, including the common bread molds Mucor and Rhizopus. It is a sister phylum to Dikarya.
Funneliformis mosseae is a species of fungus in the family Glomeraceae, which is an arbuscular mycorrhizal (AM) fungi that forms symbiotic relationships with plant roots. Funneliformis mosseae has a wide distribution worldwide, and can be found in North America, South America, Europe, Africa, Asia and Australia. Funneliformis are characterized by having an easily visible septum in the area of the spore base and are often cylindrical or funnel-shaped. Funneliformis mosseae similarly resembles Glomus caledonium, however the spore wall of Funneliformis mosseae contains three layers, whereas Gl. caledonium spore walls are composed of four layers. Funneliformis is an easily cultivated species which multiplies well in trap culture, along with its high distribution, F. mosseae is not considered endangered and is often used for experimental purposes when combined with another host.
Gigaspora margarita is an Arbuscular Mycorrhizal Fungi (AMF) which means it is an obligate symbiont that creates mutualistic relationships with many different plant species. Being an AMF, G. margarita does not produce a fruiting body. All of its mycelium will be found in the soil, associating with plant roots. Though hard to distinguish between different species of AMF, microscopic distinctions can be made. A prominent morphological distinction for species in the Gigasporaceae family is their large sized spores. Gigaspora margarita is characterized by its large, white, pearl-like spores found anywhere from 260 - 400 micrometers. This is where it gets its name as margarita in Latin means pearl.
Glomus macrocarpum is a vesicular-arbuscular endomycorrhizal plant pathogen in the Glomeraceae family of fungi. Also occasionally known as Endogone macrocarpa, G. macrocarpum is pathogenic to multiple plants, including tobacco and chili plants. G. macrocarpum was first discovered in the French woodlands by the Tulsane brothers in the early to mid 1800s. Their first known description of G. macrocarpum was published in the New Italian Botanical Journal in 1845. G. macrocarpum has since been documented in over 26 countries, including Australia, China, and Japan for example. G. macrocarpum is frequently found in grassy meadows, forests, greenhouses, and fruit orchards. It is known for its small, round-edged, and light brown to yellow-brown sporocarp. G. macrocarpum is sometimes known as the Glomerales truffle.
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