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The phylum Bacteroidota is composed of three large classes of Gram-negative, nonsporeforming, anaerobic or aerobic, and rod-shaped bacteria that are widely distributed in the environment, including in soil, sediments, and sea water, as well as in the guts and on the skin of animals.
The purple sulfur bacteria (PSB) are part of a group of Proteobacteria capable of photosynthesis, collectively referred to as purple bacteria. They are anaerobic or microaerophilic, and are often found in stratified water environments including hot springs, stagnant water bodies, as well as microbial mats in intertidal zones. Unlike plants, algae, and cyanobacteria, purple sulfur bacteria do not use water as their reducing agent, and therefore do not produce oxygen. Instead, they can use sulfur in the form of sulfide, or thiosulfate (as well, some species can use H2, Fe2+, or NO2−) as the electron donor in their photosynthetic pathways. The sulfur is oxidized to produce granules of elemental sulfur. This, in turn, may be oxidized to form sulfuric acid.
Purple bacteria or purple photosynthetic bacteria are Gram-negative proteobacteria that are phototrophic, capable of producing their own food via photosynthesis. They are pigmented with bacteriochlorophyll a or b, together with various carotenoids, which give them colours ranging between purple, red, brown, and orange. They may be divided into two groups – purple sulfur bacteria and purple non-sulfur bacteria (Rhodospirillaceae). Purple bacteria are anoxygenic phototrophs widely spread in nature, but especially in aquatic environments, where there are anoxic conditions that favor the synthesis of their pigments.
Sulfur-reducing bacteria are microorganisms able to reduce elemental sulfur (S0) to hydrogen sulfide (H2S). These microbes use inorganic sulfur compounds as electron acceptors to sustain several activities such as respiration, conserving energy and growth, in absence of oxygen. The final product or these processes, sulfide, has a considerable influence on the chemistry of the environment and, in addition, is used as electron donor for a large variety of microbial metabolisms. Several types of bacteria and many non-methanogenic archaea can reduce sulfur. Microbial sulfur reduction was already shown in early studies, which highlighted the first proof of S0 reduction in a vibrioid bacterium from mud, with sulfur as electron acceptor and H2 as electron donor. The first pure cultured species of sulfur-reducing bacteria, Desulfuromonas acetoxidans, was discovered in 1976 and described by Pfennig Norbert and Biebel Hanno as an anaerobic sulfur-reducing and acetate-oxidizing bacterium, not able to reduce sulfate. Only few taxa are true sulfur-reducing bacteria, using sulfur reduction as the only or main catabolic reaction. Normally, they couple this reaction with the oxidation of acetate, succinate or other organic compounds. In general, sulfate-reducing bacteria are able to use both sulfate and elemental sulfur as electron acceptors. Thanks to its abundancy and thermodynamic stability, sulfate is the most studied electron acceptor for anaerobic respiration that involves sulfur compounds. Elemental sulfur, however, is very abundant and important, especially in deep-sea hydrothermal vents, hot springs and other extreme environments, making its isolation more difficult. Some bacteria – such as Proteus, Campylobacter, Pseudomonas and Salmonella – have the ability to reduce sulfur, but can also use oxygen and other terminal electron acceptors.
Methanosarcina acetivorans is a versatile methane producing microbe which is found in such diverse environments as oil wells, trash dumps, deep-sea hydrothermal vents, and oxygen-depleted sediments beneath kelp beds. Only M. acetivorans and microbes in the genus Methanosarcina use all three known metabolic pathways for methanogenesis. Methanosarcinides, including M. acetivorans, are also the only archaea capable of forming multicellular colonies, and even show cellular differentiation. The genome of M. acetivorans is one of the largest archaeal genomes ever sequenced. Furthermore, one strain of M. acetivorans, M. a. C2A, has been identified to possess an F-type ATPase along with an A-type ATPase.
Oxalicibacterium horti is a Gram-negative, rod-shaped, non-spore-forming, yellow-pigmented bacterium from the genus Oxalicibacterium and family Oxalobacteraceae. O. horti uses potassium oxalate as a sole carbon source. Its 16S rRNA gene sequence analysis has shown that it belongs to the order of Betaproteobacteria, most closely to Oxalicibacterium flavum.
Deleya halophila is a salt-loving, gram-negative bacteria. It is known to habitat marine environments, solar salterns, saline soils, and salted food. The genus was named after J. De Ley, a noted biologist. Its type strain is CCM 3662.
Methanococcoides methylutens is a methylotrophic marine methanogen, the type species of its genus. It utilises trimethylamine, diethylamine, monomethylamine, and methanol as substrates for growth and methanogenesis. Cells are non-motile, non-spore-forming, irregular cocci 1 μm in diameter which stain Gram-negative and occur singly or in pairs. TMA-10 is the type strain.
Rhodoferax is a genus of Betaproteobacteria belonging to the purple nonsulfur bacteriarophic. Originally, Rhodoferax species were included in the genus Rhodocyclus as the Rhodocyclus gelatinous-like group. The genus Rhodoferax was first proposed in 1991 to accommodate the taxonomic and phylogenetic discrepancies arising from its inclusion in the genus Rhodocyclus. Rhodoferax currently comprises four described species: R. fermentans, R. antarcticus, R. ferrireducens, and R. saidenbachensis. R. ferrireducens, lacks the typical phototrophic character common to two other Rhodoferax species. This difference has led researchers to propose the creation of a new genus, Albidoferax, to accommodate this divergent species. The genus name was later corrected to Albidiferax. Based on geno- and phenotypical characteristics, A. ferrireducens was reclassified in the genus Rhodoferax in 2014. R. saidenbachensis, a second non-phototrophic species of the genus Rhodoferax was described by Kaden et al. in 2014.
Desulfitobacterium metallireducens is an anaerobic bacterium that couples growth to the reduction of metals and humic acids as well as chlorinated compounds. Its type strain is 853-15A(T). It was first isolated from a uranium-contaminated aquifer sediment.
Thermococcus stetteri is an extremely thermophilic, marine, sulfur-metabolizing archaebacterium. It is anaerobic, its cells being irregular cocci 1 to 2 μm in diameter. Of the strains first isolated, two were motile due to a tuft of flagella, while the other two strains were nonmotile. Its type strain is K-3. It can grow on starch, pectin, and peptides, but not amino acids.
Syntrophaceticus schinkii is a species of strictly anaerobic, mesophilic, endospore-forming, syntrophic, acetate-oxidizing bacterium, the type species of its genus. Its type strain is Sp3T, which was isolated from an anaerobic filter treating wastewater in a fishmeal factory.
Penicillium simplicissimum is an anamorph species of fungus in the genus Penicillium which can promote plant growth. This species occurs on food and its primary habitat is in decaying vegetations Penicillium simplicissimum produces verruculogene, fumitremorgene B, penicillic acid, viridicatumtoxin, decarestrictine G, decarestrictine L, decarestrictine H, decarestrictine I, decarestrictine K decarestrictine M, dihydrovermistatin, vermistatin and penisimplicissin
Streptomyces brasiliensis is a bacterial species of the genus of Streptomyces that has been isolated from soil. S. brasiliensis produces neomycin. S. brasiliensis sporulates when it is cultured with galactose and glutamic acid as carbon and nitrogen sources. The colonies are red/pink or red/orange, and the pigment is not permeable. Sucrose nitrate synthesize AGAR: gas filaments slightly pink, white. Spore filaments are non-helical. They are ovoid, spherical.
Oxalotrophic bacteria are bacteria capable of using oxalate as their sole source of carbon and energy. Oxalate is the anion of a salt of oxalic acid; oxalotrophs often consume calcium oxalate. Oxalotrophic bacteria are often facultative methylotrophs.
Acidipila is a bacterial genus from the family of Acidobacteriaceae. All reported examples have been isolated from acidic substrates and are capable of growth on sugars
Dinoroseobacter shibae is a facultative anaerobic anoxygenic photoheterotroph belonging to the family, Rhodobacteraceae. First isolated from washed cultivated dinoflagellates, they have been reported to have mutualistic as well as pathogenic symbioses with dinoflagellates.
Clostridium drakei is a strictly anaerobic bacterium from the genus Clostridium which has been isolated from a coal mine pond in Germany.
Microbial oxidation of sulfur is the oxidation of sulfur by microorganisms to build their structural components. The oxidation of inorganic compounds is the strategy primarily used by chemolithotrophic microorganisms to obtain energy to survive, grow and reproduce. Some inorganic forms of reduced sulfur, mainly sulfide (H2S/HS−) and elemental sulfur (S0), can be oxidized by chemolithotrophic sulfur-oxidizing prokaryotes, usually coupled to the reduction of energy-rich oxygen (O2) or nitrate (NO3−). Anaerobic sulfur oxidizers include photolithoautotrophs that obtain their energy from sunlight, hydrogen from sulfide, and carbon from carbon dioxide (CO2).
"CandidatusThiodictyon syntrophicum" is a gram-negative bacterium classified within purple sulfur bacteria (PSB). "Ca. T. syntrophicum" grows best under micro-oxic and low light conditions. There has only been one successful enrichment of "Ca. T. syntrophicum"; "Ca. T. syntrophicum" strain Cad16T.
References
- 1 2 "Genus Rhodomicrobium". LPSN . List of prokaryotic names with standing in nomenclature (LPSN).
- ↑ "Rhodomicrobium vannielii". Straininfo.
- ↑ "Rhodomicrobium vannielii". UniProt Taxonomy.
- ↑ Neunlist S, Holst O, Rohmer M (March 1985). "Prokaryotic triterpenoids. The hopanoids of the purple non-sulphur bacterium Rhodomicrobium vannielii: an aminotriol and its aminoacyl derivatives, N-tryptophanyl and N-ornithinyl aminotriol". European Journal of Biochemistry. 147 (3): 561–8. doi: 10.1111/j.0014-2956.1985.00561.x . PMID 3979387.
- ↑ Parish JH (1979). Developmental Biology of Prokaryotes. University of California Press. ISBN 0520040163.
- 1 2 3 4 5 6 7 8 Ainon H, Tan CJ, Vikineswary S (June 2006). "Biological Characterization of Rhodomicrobium vannielii Isolated from a Hot Spring at Gadek, Malacca, Malaysia". Malaysian Journal of Microbiology. doi: 10.21161/mjm.210603 . ISSN 2231-7538.
- ↑ Leutwiler LS, Chapman DJ (May 1978). "Biosynthesis of carotenoids in Rhodomicrobium vannielii". FEBS Letters. 89 (2): 248–52. doi: 10.1016/0014-5793(78)80228-2 . PMID 658413.
- 1 2 Duchow E, Douglas HC (October 1949). "Rhodomicrobium Vannielii, a New Photoheterotrophic Bacterium". Journal of Bacteriology. 58 (4): 409–16. doi:10.1128/JB.58.4.409-416.1949. PMC 385647 . PMID 16561801.