Rickettsiella | |
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Genus: | Rickettsiella Philip, 1956 [1] |
Rickettsiella is a genus of the family Coxiellaceae. [2] It should not be confused with Rickettsia . It is currently considered of the Gammaproteobacteria. However, its placement under Coxiellaceae instead of Legionellaceae has been challenged. [3]
Members of the genera Rickettsiella and Diplorickettsia are observed to form a reliable clade in phylogenetic trees constructed from various datasets of concatenated protein sequences and 16S rRNA sequences, suggesting that they might belong to a single genus. Genomic analyses identified 12 conserved signature indels (CSIs) that are specific for this clade in the proteins inositol monophosphatase, lysyl-tRNA synthetase, elongation factor P-(R)-beta-lysine ligase, tol-Pal system beta propeller repeat protein TolB, FKBP-type peptidyl-prolyl cis-trans isomerase, response regulator transcription factor, 30S ribosomal protein S2, glycine cleavage system aminomethyltransferase GcvT, M3 family metallopeptidase, lysm peptidoglycan-binding domain-containing protein and oligopeptide transporter. [4] The presence of these CSIs reliably distinguishes this clade from other Legionellales species in molecular terms, further supporting the combination of the genera Rickettsiella and Diplorickettsia.
Additionally, three CSIs were identified as uniquely shared between Diplorickettsia,Rickettsiella and Coxiella, another genus belonging to the family Coxiellaceae. The absence of Aquicella species (the remaining genus within the family Coxiellaceae) from the shared CSIs suggests that the genera Coxiella, Diplorickettsia and Rickettsiella share a common ancestor exclusive of Aquicella.
The Legionellales are an order of Proteobacteria. Like all Proteobacteria, they are Gram-negative. They comprise two families, typified by Legionella and Coxiella, both of which include notable pathogens. For example, Q fever is caused by Coxiella burnetii and Legionella pneumophila causes Legionnaires' disease and Pontiac fever.
The Pasteurellaceae comprise a large family of Gram-negative bacteria. Most members live as commensals on mucosal surfaces of birds and mammals, especially in the upper respiratory tract. Pasteurellaceae are typically rod-shaped, and are a notable group of facultative anaerobes. Their biochemical characteristics can be distinguished from the related Enterobacteriaceae by the presence of oxidase, and from most other similar bacteria by the absence of flagella.
The Caryophanaceae is a family of Gram-positive bacteria. In 2020, the now defunct family Planococcaceae was merged into Caryophanaceae to rectify a nomenclature anomaly. The type genus of this family is Caryophanon.
Coxiella refers to a genus of Gram-negative bacteria in the family Coxiellaceae. It is named after Herald Rea Cox (1907–1986), an American bacteriologist. It is one of the Gammaproteobacteria.
Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. CSIs, brought about by rare genetic changes, provide useful phylogenetic markers that are generally of defined size and they are flanked on both sides by conserved regions to ensure their reliability. While indels can be arbitrary inserts or deletions, CSIs are defined as only those protein indels that are present within conserved regions of the protein.
Diplorickettsia massiliensis species is an obligate intracellular, gram negative bacterium isolated from Ixodes ricinus ticks collected in Slovak republic forest geographically from southeastern part of Rovinka in 2006. They belong to the gammaproteobacteria class and are non endospore forming, small rods usually grouped in pairs. The bacteria are non-motile, and 16S rRNA, rpoB, parC and ftsY gene sequencing indicate that this bacterium is clearly different from all other recognized species. An initial phylogenetic analysis based on 16S rRNA, clustered D. massiliensis with Rickettsiella grylli. Because of its low 16S rDNA similarity (94%) with R. grylli, it was classified as a new genus Diplorickettsia into the family Coxiellaceae and the order Legionellales. D. massiliensis strain 20B was identified in three patients with suspected tick-borne infections that exhibited a specific seroconversion. The evidence of infection was further reconfirmed by using PCR-assay, thus established its role as a human pathogen and later whole genome sequencing was performed.
The Yersiniaceae are a family of Gram-negative bacteria that includes some familiar pathogens. For example, the type genus Yersinia includes Yersinia pestis, the causative agent of plague. This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Proteobacteria.
Cytobacillus is a genus of rod-shaped bacteria that stain either Gram-positive or Gram-variable in the family Bacillaceae within the order Bacillales. The type species for this genus is Cytobacillus firmus.
Alteribacter is a genus of Gram-positive or Gram-variable, rod-shaped bacteria in the family Bacillaceae within the order Bacillales. The type species for this genus is Alteribacter auranticus.
Lederbergia is a genus of Gram-positive or Gram-variable, rod-shaped bacteria in the family Bacillaceae within the order Bacillales. The type species for this genus is Lederbergia galactosidilyticus.
Litchfieldia is a genus of Gram-positive rod-shaped bacteria in the family Bacillaceae within the order Bacillales. The type species for this genus is Litchfieldia alkalitelluris.
Robertmurraya is a genus of mostly Gram-Positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Robertmurraya siralis.
Rossellomorea is a genus of Gram-Positive or Gram-variable staining rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Rossellomorea aquimaris.
Schinkia is a genus of Gram-positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Schinkia azotoformans.
Sutcliffiella is a genus of Gram-Positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Sutcliffiella cohnii.
Alkalicoccus is a genus of Gram-Positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Alkalicoccus saliphilus.
Metasolibacillus is a genus of Gram-Positive rod-shaped bacteria in the family Caryophanaceae from the order Caryophanales. The type species of this genus is Metasolibacillus meyeri.
Metalysinibacillus is a genus of Gram-Positive rod-shaped bacteria in the family Caryophanaceae from the order Caryophanales. The type species of this genus is Metalysinibacillus jejuensis.
Metaplanococcus is a genus of Gram-Positive or Gram-variable, cocci or short rod-shaped bacteria in the family Caryophanaceae from the order Caryophanales. The type species of this genus is Metaplanococcus flavidus.
Aquicella is a genus of Gram-negative rod-shaped cells and filaments in the family Coxiellaceae from the order Legionellales. The type species of this genus is Aquicella lusitana.