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Mycology is the branch of biology concerned with the study of fungi, including their genetic and biochemical properties, their taxonomy and their use to humans as a source for tinder, medicine, food, and entheogens, as well as their dangers, such as toxicity or infection.
Lactobacillus is a genus of Gram-positive, facultative anaerobic or microaerophilic, rod-shaped, non-spore-forming bacteria. They are a major part of the lactic acid bacteria group. In humans, they constitute a significant component of the microbiota at a number of body sites, such as the digestive system, urinary system, and genital system. In women of European ancestry, Lactobacillus species are normally a major part of the vaginal microbiota. Lactobacillus forms biofilms in the vaginal and gut microbiota, allowing them to persist during harsh environmental conditions and maintain ample populations. Lactobacillus exhibits a mutualistic relationship with the human body, as it protects the host against potential invasions by pathogens, and in turn, the host provides a source of nutrients. Lactobacillus is the most common probiotic found in food such as yogurt, and it is diverse in its application to maintain human well-being, as it can help treat diarrhea, vaginal infections, and skin disorders such as eczema.
A spirochaete or spirochete is a member of the phylum Spirochaetes, which contains distinctive diderm (double-membrane) bacteria, most of which have long, helically coiled cells. Spirochaetes are chemoheterotrophic in nature, with lengths between 3 and 500 µm and diameters around 0.09 to at least 3 µm.
Neisseria is a large genus of bacteria that colonize the mucosal surfaces of many animals. Of the 11 species that colonize humans, only two are pathogens, N. meningitidis and N. gonorrhoeae. Most gonoccocal infections are asymptomatic and self-resolving, and epidemic strains of the meningococcus may be carried in >95% of a population where systemic disease occurs at <1% prevalence.
Vibrio is a genus of Gram-negative bacteria, possessing a curved-rod shape, several species of which can cause foodborne infection, usually associated with eating undercooked seafood. Typically found in salt water, Vibrio species are facultative anaerobes that test positive for oxidase and do not form spores. All members of the genus are motile and have polar flagella with sheaths. Vibrio species typically possess two chromosomes, which is unusual for bacteria. Each chromosome has a distinct and independent origin of replication, and are conserved together over time in the genus. Recent phylogenies have been constructed based on a suite of genes.
Deinococcus–Thermus is a phylum of bacteria that are highly resistant to environmental hazards, also known as extremophiles. These bacteria have thick cell walls that give them gram-positive stains, but they include a second membrane and so are closer in structure to those of gram-negative bacteria. Cavalier-Smith calls this clade Hadobacteria.
The phylum Bacteroidetes is composed of three large classes of Gram-negative, nonsporeforming, anaerobic or aerobic, and rod-shaped bacteria that are widely distributed in the environment, including in soil, sediments, and sea water, as well as in the guts and on the skin of animals. Bacteroidetes spp. are part of normal, healthy placental microbiome.
Corynebacterium is a genus of bacteria that are Gram-positive and aerobic. They are bacilli (rod-shaped), and in some phases of life they are, more particularly, club-shaped, which inspired the genus name.
Mycoplasmataceae is a family of bacteria in the order Mycoplasmatales. This family consists of the genera Mycoplasma and Ureaplasma.
The Pasteurellaceae comprise a large family of Gram-negative bacteria. Most members live as commensals on mucosal surfaces of birds and mammals, especially in the upper respiratory tract. Pasteurellaceae are typically rod-shaped, and are a notable group of facultative anaerobes. Their biochemical characteristics can be distinguished from the related Enterobacteriaceae by the presence of oxidase, and from most other similar bacteria by the absence of flagella.
The Burkholderiaceae are a family of bacteria included in the order Burkholderiales. It includes some pathogenic species, such as Burkholderia mallei (glanders) and Burkholderia pseudomallei (melioidosis).
Mycobacterium smegmatis is an acid-fast bacterial species in the phylum Actinobacteria and the genus Mycobacterium. It is 3.0 to 5.0 µm long with a bacillus shape and can be stained by Ziehl-Neelsen method and the auramine-rhodamine fluorescent method. It was first reported in November 1884 by Lustgarten, who found a bacillus with the staining appearance of tubercle bacilli in syphilitic chancres. Subsequent to this, Alvarez and Tavel found organisms similar to that described by Lustgarten also in normal genital secretions (smegma). This organism was later named M. smegmatis.
Escherichia is a genus of Gram-negative, nonspore forming, facultatively anaerobic, rod-shaped bacteria from the family Enterobacteriaceae. In those species which are inhabitants of the gastrointestinal tracts of warm-blooded animals, Escherichia species provide a portion of the microbially derived vitamin K for their host. A number of the species of Escherichia are pathogenic. The genus is named after Theodor Escherich, the discoverer of Escherichia coli. Physiologically, it is a facultative aerobe, meaning that it can grow happily with or without oxygen, but it cannot grow at extremes of temperature or pH nor can it degrade dangerous pollutants, photosynthesize, or do a variety of other things that interest microbiologists.
Verticillium is a genus of fungi in the division Ascomycota, and are an anamorphic form of the family Plectosphaerellaceae. The genus used to include diverse groups comprising saprobes and parasites of higher plants, insects, nematodes, mollusc eggs, and other fungi, thus the genus used to have a wide-ranging group of taxa characterised by simple but ill-defined characters. The genus, currently thought to contain 51 species, may be broadly divided into three ecologically based groups - mycopathogens, entomopathogens, and plant pathogens and related saprotrophs. However, the genus has undergone recent revision into which most entomopathogenic and mycopathogenic isolates fall into a new group called Lecanicillium. The genus now includes the plant-pathogenic species V. dahliae, V. longisporum, V. albo-atrum, V. nubilum, and V. tricorpus.
Batomys is a genus of rodent endemic to the Philippines. It has six described species.
Mycobacterium duvalii is a species of the phylum Actinobacteria, belonging to the genus Mycobacterium.
Xanthomonas is a genus of Proteobacteria, many of which cause plant diseases.
Saksenaea vasiformis is an infectious fungus associated with cutaneous or subcutaneous lesions following trauma. It causes opportunistic infections as the entry of the fungus is through open spaces of cutaneous barrier ranging in severity from mild to severe or fatal. It is found in soils worldwide, but is considered as a rare human pathogen since only 38 cases were reported as of 2012. Saksenaea vasiformis usually fails to sporulate on the routine culture media, creating a challenge for early diagnosis, which is essential for a good prognosis. Infections are usually treated using a combination of amphotericin B and surgery. Saksenaea vasiformis is one of the few fungi known to cause necrotizing fasciitis or "flesh-eating disease".
Uncinocarpus reesii is a species of saprotrophic microfungi that grows in soil and on keratinous materials such as hair, feathers and skin. It was the first species to be designated as part of the Uncinocarpus genus, owing in part to its characteristic development of hooked (uncinate) appendages. As the closest non-pathogenic relative of Coccidioides immitis and C. posadasii, it has become a subject of research interest.
References
- ↑ Saksena SB. (1953). "A new genus of the Mucorales". Mycologia. 45 (3): 426–36. JSTOR 4547711.
- ↑ Alvarez E; Garcia-Hermoso D; Sutton DA; Cano JF; Stchigel AM; Hoinard D; Fothergill AW; Rinaldi MG; Dromer F; Guarro J. (2010). "Molecular phylogeny and proposal of two new species of the emerging pathogenic fungus Saksenaea". Journal of Clinical Microbiology. 48 (12): 4410–16. doi:10.1128/JCM.01646-10. PMC 3008438 . PMID 20926710.
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