TMEM19

TMEM19
Identifiers
Aliases	TMEM19 , transmembrane protein 19
External IDs	MGI: 1914476; HomoloGene: 10107; GeneCards: TMEM19; OMA:TMEM19 - orthologs
Gene location (Human) Chr. Chromosome 12 (human) [1] Band 12q21.1 Start 71,686,082 bp [1] End 71,705,047 bp [1]
Gene location (Mouse) Chr. Chromosome 10 (mouse) [2] Band 10|10 D2 Start 115,175,579 bp [2] End 115,198,406 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in mucosa of ileum skin of arm myocardium of left ventricle cardiac muscle tissue of right atrium jejunal mucosa pancreatic ductal cell duodenum skin of thigh skin of hip bone marrow cells Top expressed in right kidney proximal tubule left lobe of liver human kidney epithelium of small intestine stroma of bone marrow duodenum lip intestinal villus yolk sac More reference expression data BioGPS n/a
Orthologs Species Human Mouse Entrez 55266 67226 Ensembl ENSG00000139291 ENSMUSG00000069520 UniProt Q96HH6 Q91W52 RefSeq (mRNA) NM_018279 NM_133683 NM_001359470 NM_001359471 NM_001359472 RefSeq (protein) NP_060749 NP_598444 NP_001346399 NP_001346400 NP_001346401 Location (UCSC) Chr 12: 71.69 – 71.71 Mb Chr 10: 115.18 – 115.2 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Transmembrane protein 19 is a protein that in humans is encoded by the TMEM19 gene.

Gene

TMEM19 location on chromosome 12

The TMEM19 gene is located on chromosome 12(12q21.1) spanning 18,966 base pairs on the + strand. The gene has a total of 6 exon regions.

Studies have found that after using single nucleotide polymorphism (SNP) genotyping array method the TMEM19 gene was identified to be associated with ammonia nitrogen tolerance. ^[5] Using a genome-wide association study of individuals with non-syndromic cleft lip with palate (NSCLP) to identify loci that are at risk for the birth defect. ^[6] From this they were able to identify the loci of TMEM19 as a risk for this birth defect, along with 25 other loci.

Transcript

The mRNA transcript of TMEM19 is 5662 base pairs. The TMEM19 transcript was found to be expressed in most tissues but has increased expression in duodenum, kidney, skin, small intestine, and urinary bladder. in a non-alcoholic fatty liver disease (NAFLD) model in cells that were subjected to glucose deficiency or oxidative stress. This results in cell death due to excessive disulfide formation in actin cytoskeleton and actin filament called disulfidptosis. ^[7]

• 
  A conceptual translation of the human TMEM19 was made using data from NCBI ^[8] and translated using Six Frame Translations. ^[9] Transmembrane regions are highlighted in gray, and highly conserved regions are bolded.
• 
  A conceptual translation of the human TMEM19 was made using data from NCBI ^[8] and translated using Six Frame Translations. ^[9] Transmembrane regions are highlighted in gray, and highly conserved regions are bolded.
• 
  A conceptual translation of the human TMEM19 was made using data from NCBI ^[8] and translated using Six Frame Translations. ^[9] Transmembrane regions are highlighted in gray, and highly conserved regions are bolded.

Protein

TMEM19 is a protein spanning 336 amino acids. It has 6 transmembrane regions. The protein is found at moderate levels in the body, with the highest expression found in superior cervical ganglia and cardiac myocytes. ^[10] TMEM19 interacts with many proteins, most of these proteins are localized around membranes found in the cell.

Data was obtained from a large-scale analysis of the human transcriptome on NCBI Geo. The data contains expression patterns of TMEM19 in different tissues in the body. The value in red shows the amount of expression and the blue dot signifies the rank of expression compared to other protein expression in tissues.

TMEM19 expression in Mus musculus brain. A sagittal slice of a mouse midbrain shows expression of TMEM19 shown in purple. The image was collected by the Allen Brain Map.

Protein Interactions

Protein	Full Name	Detection Method	Description	CV
MC4R	Melanocortin 4 Receptor	Ubiquitin Reconstruction	Membrane-bound receptor and member of the melanocortin receptor family. Protein interacts with adrenocorticotropic and MSH hormones. Mediated by G proteins. (NCBI [12] )	0.37
BSCL2	Bernardinelli-Seip Congenital Lipodystrophy Type 2 Protein	Two Hybrid	Also known as Seipin, a multi-pass transmembrane protein. Localized in the ER and is predicted to be associated with lipid droplet morphology. Mutations of this gene leads to Berardinelli-Seip syndrome which results in absence of adipose tissue and severe insulin resistance. (NCBI [13] )	0.67
APOA5	Apolipoprotein A5	Two Hybrid	Plays a role in regulating the plasma triglyceride levels, a major risk factor of CAD. Is a component of high-density lipoprotein, similar to a rat protein that is upregulated in response to liver injury. Mutations in the gene are associated with hypertriglyceridemia and hyperlipoproteinemia type 5. (NCBI [14] )	0.56
AQP6	Aquaporin 6	Two Hybrid	Functions as a water channel in cells. Specific to the kidney. (NCBI [15] )	0.56
C10orf67	Chromosome 10 open reading frame 67	Two Hybrid	Predicted to be located in mitochondrion. Possible link to Crohn's and sarcoidosis. (NCBI [16] )	0.56
CD3G	CD3 gamma subunit of T-cell receptor complex	Two Hybrid	Component of the T-cell receptor-CD3 complex. Mutations with this protein are associated with T cell immunodeficiency. (NCBI [17] )	0.56
CD79A	CD79a molecule	Two Hybrid	The Ig-alpha protein of the B-cell antigen component. (NCBI [18] )	0.56
CNR2	Cannabinoid receptor 2	Two Hybrid	G protein-coupled receptor from cannabinoid family. Related to CB1 which is responsible for the efficacy of THC. Mainly expressed in cells of the immune system. (NCBI [19] )	0.56
CPLX4	Complexin 4	Two Hybrid	May be involved in synaptic vesicle exocytosis. (NCBI [20] )	0.56
CREB3	cAMP responsive element binding protein 3	Two Hybrid	Transcription factor that bind to cAMP-response element and regulates cell proliferation. Also plays a role in leukocyte migration, tumor suppression, and ER stress-associated protein degradation. (NCBI [21] )	0.56
CREB3L1	cAMP responsive element binding protein 3 like 1	Two Hybrid	Normally found in the membrane of ER. Upon stress to ER the protein is cleaved and released into the cytoplasm where is translocated to the nucleus. It then activates the transcription of target genes by binding to box-B elements. (NCBI [22] )	0.56

Post translational modifications

Visual predicted representation of TMEM19 in the cell membrane. In image A the transmembrane regions were selected using NCBI and in image B the seventh predicted transmembrane region found from SOSUI analysis was added. Amino acids in red are sites of kinase phosphorylation.

Using BioCuckoo, TMEM19 was analyzed for phosphorylation sites in the protein sequence. The program was run on a medium threshold and scanned for every kinase available. Phosphorylation sites are in order of decreasing score. AGC represents protein kinase A, protein kinase G, and protein kinase C. ^[23]

Phosphorylation Sites

Position	Code	Kinase	Protein Sequence Pos.	Score	Cutoff
197	S	AGC	SEVGPVLSKSSPRLI	0.0559	0.0197
214	T	AGC	WEKVPVGTNGGVTVV	0.0568	0.0197
187	T	CK1	LACSAGDTWASEVGP	0.0666	0.0532
108	S	AGC	LMFFLSSSKLTKWKG	0.1333	0.0197
288	T	CK1	YTGLDESTGMVVNSP	0.1427	0.0532
287	S	CK1	QYTGLDESTGMVVNS	0.1517	0.0532
200	S	CDK, MAPK, GSK, CLK	GPVLSKSSPRLITTW	0.1546	0.0403
296	T	CK1	GMVVNSPTNKARHIA	0.2926	0.0532
125	Y	TK	KKRLDSEYKEGGQRN	0.7851	0.7641
167	Y	TK	PVDFSKQYSASWMCL	0.8679	0.7641
281	Y	TK	YLGATMQYTGLDEST	0.9762	0.7641

Evolutionary history

Sequence Divergence of TMEM19. The sequence divergence of TMEM19 was compared alongside Cytochrome C and Fibrinogen alpha. Sequence identity of each protein was determined in order to find the sequence divergence. The sequence divergence was used to calculate the corrected divergence (M). A line of best fit was included to show the projected divergence.

TMEM19 Orthologs were sorted by the median date of divergence. TMEM19 has a median date of divergence greater than 1598 MYA which is found in Thale cress. TMEM19 does not have any paralogs, this was determined after running TMEM19 through BLAST. The human TMEM19 protein is closely related to vertebrates and moderately related to fungi/plants. TMEM19 evolves at a rate that is related to cytochrome c.

• 
  TMEM19 Strict Orthologs (Vertebrates) Multiple Sequence Alignment. Sequences were aligned using ClustalO, ^[24] transmembrane regions and exons were boxed. Consensus of amino acids are shown at 100% and 90%. Amino acids are colored based on their physicochemical properties.
• 
  TMEM19 Strict Orthologs (Vertebrates) Multiple Sequence Alignment. Sequences were aligned using ClustalO, ^[24] transmembrane regions and exons were boxed. Consensus of amino acids are shown at 100% and 90%. Amino acids are colored based on their physicochemical properties.
• 
  TMEM19 Strict Orthologs (Vertebrates) Multiple Sequence Alignment. Sequences were aligned using ClustalO, ^[24] transmembrane regions and exons were boxed. Consensus of amino acids are shown at 100% and 90%. Amino acids are colored based on their physicochemical properties.

Orthologs of Human TMEM19

Common Name	Class	Order	Genus and Species	Median Date of Divergence	Accession Number	Sequence Length	Sequence Identity to Humans %	Sequence Similarity to Humans %
Humans	Mammal	Primates	Homo sapiens	0	NP_060749.2 [25]	336	100	100
Mouse	Mammal	Rodentia	Mus musculus	87	NP_001346399.1 [26]	351	87.46	90.3
Meerkat	Mammal	Carnivora	Suricata suricatta	94	XP_029810978.1 [27]	336	91.92	96.4
Jamaican Fruit Bat	Mammal	Bats	Artibeus jamaicensis	94	XP_037017069.2 [28]	336	90.45	95.5
Baiji Dolphin	Mammal	Artiodactyla	Lipotes vexillifer	94	XP_007448836.1 [29]	358	89.58	90.8
Leatherback Turtle	Reptile	Testudines	Dermochelys coriacea	319	XP_038233118.1 [30]	335	82.26	89.9
Schlegal's Japanese Gecko	Reptile	Squamata	Gekko japonicus	319	XP_015261175.1 [31]	282	81.23	77.4
Burmese Python	Reptile	Squamata	Python bivittatus	319	XP_007423004.1 [32]	371	80.06	80.1
Viviparous Lizard	Reptile	Squamata	Zootoca vivipara	319	XP_034984278.1 [33]	336	79.85	88.3
Emu	Bird	Casuariiformes	Dromaius novaehollandiae	319	XP_025956153.1 [34]	336	77.38	89.3
Black Legged Kittiwake	Bird	Charadriiformes	Rissa tridactyla	319	XP_054044439.1 [35]	367	77.31	82.3
Japanese Quail	Bird	Galliformes	Coturnix japonica	319	XP_015711317.1 [36]	344	76.13	86.4
California Condor	Bird	Gymnogyps	Accipitriformes	319	XP_050753817.1 [37]	336	77.4	89.6
African Clawed Frog	Amphibian	Anura	Xenopus laevis	352	NP_001085034.1 [38]	336	76.12	89.3
Two-Lined Caecillian	Amphibian	Gymnophiona	Rhinatrema bivittatum	352	XP_029453037.1 [39]	336	76.12	89.3
Asian Arowana	Fish	Osteoglossiformes	Scleropages formosus	429	XP_018611167.1 [40]	336	69.33	84.5
Pacific Halibut	Fish	Pleuronectiformes	Hippoglossus stenolepis	429	XP_035003305.1 [41]	335	67.87	83
Sea Lamprey	Fish	Petromyzontiformes	Petromyzon marinus	563	XP_032815808.1 [42]	362	63.35	73
Zebra Shark	Fish	Orectolobiformes	Stegostoma tigrinum	462	XP_048404699.1 [43]	354	73.59	80.5
Pin Mould	Fungi	Mucorales	Mucor mucedo	1275	XP_051459555.1 [44]	284	32.8	47.7
Ascomycete Fungi	Fungi	Helotiales	Lachnellula hyalina	1275	XP_031007997.1 [45]	383	23.3	35.9
Thale Cress	Plant	Brassicales	Arabidopsis thaliana	1598	NP_001190343.1 [46]	288	34.6	50

References

1. GRCh38: Ensembl release 89: ENSG00000139291 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000069520 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Fu S, Liu J (2022-08-22). "Genome-wide association study identified genes associated with ammonia nitrogen tolerance in Litopenaeus vannamei". Frontiers in Genetics. 13: 961009. doi: 10.3389/fgene.2022.961009 . PMC   9441690 . PMID   36072655.
6. Yu Y, Zuo X, He M, Gao J, Fu Y, Qin C, et al. (February 2017). "Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity". Nature Communications. 8: 14364. Bibcode:2017NatCo...814364Y. doi:10.1038/ncomms14364. PMC   5333091 . PMID   28232668.
7. Yu X, Guo Z, Fang Z, Yang K, Liu C, Dong Z, Liu C (2023-09-08). "Identification and validation of disulfidptosis-associated molecular clusters in non-alcoholic fatty liver disease". Frontiers in Genetics. 14: 1251999. doi: 10.3389/fgene.2023.1251999 . PMC   10514914 . PMID   37745847.
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9. "Six-Frame Translation". www.bioline.com. Retrieved 2023-12-16.
10. Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, et al. (April 2004). "A gene atlas of the mouse and human protein-encoding transcriptomes". Proceedings of the National Academy of Sciences of the United States of America. 101 (16): 6062–6067. Bibcode:2004PNAS..101.6062S. doi: 10.1073/pnas.0400782101 . PMC   395923 . PMID   15075390.
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14. "APOA5 apolipoprotein A5 [Homo sapiens (Human)] - Gene - NCBI".
15. "AQP6 aquaporin 6 [Homo sapiens (Human)] - Gene - NCBI".
16. "C10orf67 chromosome 10 open reading frame 67 [Homo sapiens (Human)] - Gene - NCBI".
17. "CD3G CD3 gamma subunit of T-cell receptor complex [Homo sapiens (Human)] - Gene - NCBI".
18. "CD79A CD79a molecule [Homo sapiens (Human)] - Gene - NCBI".
19. "CNR2 cannabinoid receptor 2 [Homo sapiens (Human)] - Gene - NCBI".
20. "CPLX4 complexin 4 [Homo sapiens (Human)] - Gene - NCBI".
21. "CREB3 cAMP responsive element binding protein 3 [Homo sapiens (Human)] - Gene - NCBI".
22. "CREB3L1 cAMP responsive element binding protein 3 like 1 [Homo sapiens (Human)] - Gene - NCBI".
23. "The CUCKOO Workgroup". biocuckoo.org. Retrieved 2023-12-07.
24. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2023-12-16.
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29. "PREDICTED: Transmembrane protein 19 [Lipotes vexillifer] - Protein - NCBI".
30. "Transmembrane protein 19 isoform X1 [Dermochelys coriacea] - Protein - NCBI".
31. "PREDICTED: Transmembrane protein 19, partial [Gekko japonicus] - Protein - NCBI".
32. "Transmembrane protein 19 isoform X1 [Python bivittatus] - Protein - NCBI".
33. "Transmembrane protein 19 isoform X2 [Zootoca vivipara] - Protein - NCBI".
34. "Transmembrane protein 19 [Dromaius novaehollandiae] - Protein - NCBI".
35. "Transmembrane protein 19 [Rissa tridactyla] - Protein - NCBI".
36. "Transmembrane protein 19 [Coturnix japonica] - Protein - NCBI".
37. "Transmembrane protein 19 [Gymnogyps californianus] - Protein - NCBI".
38. "Transmembrane protein 19 [Xenopus laevis] - Protein - NCBI".
39. "Transmembrane protein 19 [Rhinatrema bivittatum] - Protein - NCBI".
40. "Transmembrane protein 19 [Scleropages formosus] - Protein - NCBI".
41. "Transmembrane protein 19 [Hippoglossus stenolepis] - Protein - NCBI".
42. "Transmembrane protein 19 isoform X1 [Petromyzon marinus] - Protein - NCBI".
43. "Transmembrane protein 19 isoform X1 [Stegostoma tigrinum] - Protein - NCBI".
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