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The term boundary paradox refers to the conflict between traditional, rank-based classification of life and evolutionary thinking. In the hierarchy of ranked categories it is implicitly assumed that the morphological gap is growing along with increasing ranks: two species from the same genus are more similar than other two species from different genera in the same family, these latter two species are more similar than any two species from different families of the same order, and so on. However, this requirement may only satisfy for the classification of contemporary organisms; difficulties arise if we wish to classify descendants together with their ancestors. Theoretically, such a classification necessarily involves segmentation of the spatio-temporal continuum of populations into groups with crisp boundaries. However, the problem is not only that many parent populations would separate at species level from their offspring. The truly paradoxical situation is that some between-species boundaries would necessarily coincide with between-genus boundaries, and a few between-genus boundaries with borders between families, and so on. [1] [2] This apparent ambiguity cannot be resolved in Linnaean systems; resolution is only possible if classification is cladistic (see below).
Jean-Baptiste Lamarck, in Philosophie zoologique (1809), was the first who questioned the objectivity of rank-based classification of life, by saying:
…classes, orders, families, genera and nomenclatures are weapons of our own invention. We could not do without them, but we must use them with discretion. …among her productions nature has not really formed either classes, orders, families, genera or constant species, but only individuals who succeed one another and resemble those from which they sprung.
— J. B. Lamarck [3]
Half a century later, Charles Darwin explained that sharp separation of groups of organisms observed at present becomes less obvious if we go back into the past:
The most common case, especially with respect to very distinct groups, such as fish and reptiles, seems to be, that supposing them to be distinguished at the present day from each other by a dozen characters, the ancient members of the same two groups would be distinguished by a somewhat lesser number of characters, so that the two groups, though formerly quite distinct, at that period made some small approach to each other.
— C.R. Darwin [4]
In his book on orchids, Darwin also warned that the system of ranks would not work if we knew more details about past life:
To make a perfect gradation, all the extinct forms which have ever existed, along many lines of descent converging to the common progenitor of the order, would have to be called into life. It is due to their absence, and to the consequent wide gaps in the series, that we are enabled to divide the existing species into definable groups, such as genera, families, and tribes.
— C.R. Darwin [5]
Finally, Richard Dawkins has argued recently that
If we assume, as almost every anthropologist today accepts, that all members of the genus Homo are descended from ancestors belonging to the genus we call Australopithecus, it necessarily follows that, somewhere along the chain of descent from one species to the other, there must have been at least one individual who sat exactly on the borderline.
and
Indeed, on the evolutionary view, the conferring of discrete names should actually become impossible if only the fossil record were more complete. In one way, it is fortunate that fossils are so rare. If we had a continuous and unbroken fossil record, the granting of distinct names to species and genera would become impossible, or at least very problematical.
with the following conclusion:
The [Linnaean] system works, as long as we don’t try to classify the dead antecedents. But as soon as we include our hypothetically complete fossil record, all the neat separations break down.
— R. Dawkins [6]
The paradox may be best illustrated by model diagrams similar to Darwin’s single evolutionary tree in On the Origin of Species . [4] In these tree graphs, dots represent populations and edges correspond to parent-offspring relations. The trees are placed into a coordinate system which is one-dimensional (time) for a single lineage, and two-dimensional (differentiation vs. time) for cladogenesis or evolution with divergence.
In the single lineage model we now consider a sequence of populations along an extremely long time axis, say several hundred million years, with the last dot representing an extant population. In the figure there is space for a few dots even though edges between adjacent populations are hidden. We could use a second axis to express differentiation, but it is not necessary for our purposes. Here we assume that there is no extinction and all branching events are disregarded (if there were no branches at all, then the changes would correspond to a typical anagenesis. Classification of organisms along this sequence into species is shown by small ellipses. If the differences between certain species are judged to be large enough to justify classification into distinct genera, then generic separators must each coincide with a between-species boundary. If differences reach family-level differentiation, which is easy to imagine over the very long time we consider here, the consequence is that a family-level border must overlap with a between-genus and, in turn, a between-species border (gray arrow in the figure). One cannot imagine, however, that a parent and its offspring are so distinct that they should be classified to different families, or even genera – that would be paradoxical. This illustrates Dawkins’ above argumentation on human ancestry at the level of genera, Homo and Australopithecus .
Darwin placed emphasis on divergence, that is, when a parent population splits and these offspring populations diverge gradually, each following their own anagenetic sequence potentially with further divergence events. In this case, evolutionary (say morphological) divergence is expressed on a new, horizontal, axis and time becomes the vertical axis. At time point 1 an imaginary taxonomist judges populations A and B to belong to different species, but within the same genus. Their respective descendants, C and D are observed at time 2, and considered to represent two separate genera because their morphological difference is large. The paradox is that while A and C, as well as B and D remain within generic limits but C and D do not, so that ancestors cannot be classified together with their descendants meaningfully in a Linnaean system. This figure illustrates the problem Darwin has discussed in the fish and reptile example.
Let us consider a hypothetical evolutionary tree with four recent species, A to D, classified into two genera that are fairly distant from each other morphologically. We assume, further, that from the fossil record we only know their common ancestor, E, representing yet another genus for a taxonomist because it takes “intermediate” position between the other two – yet considerably different from both. All other forms went extinct; therefore we have classification of these five species into three genera, which would be illogical if more fossils were known. This illustrates Darwin’s and Dawkins’ examples on the role of gaps in the fossil record in classification – and nomenclature.
As demonstrated, given a Darwinian evolutionary model, descendants and their ancestors cannot be classified together within the system of Linnean ranks. Solution is provided by cladistic classification in which each group is composed of an ancestor and all of its descendant populations, a condition called monophyly. In the above models monophyletic groups may be obtained by cutting a branch (subtree) from the tree at places where, for instance, new apomorphic (evolutionary derived) characters appear. For these groups there is no need to consider how much change occurred between members of one group as compared to those of the other.
A clade, also known as a monophyletic group or natural group, is a group of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree. Rather than the English term, the equivalent Latin term cladus is often used in taxonomical literature.
Linnaean taxonomy can mean either of two related concepts:
Speciation is the evolutionary process by which populations evolve to become distinct species. The biologist Orator F. Cook coined the term in 1906 for cladogenesis, the splitting of lineages, as opposed to anagenesis, phyletic evolution within lineages. Charles Darwin was the first to describe the role of natural selection in speciation in his 1859 book On the Origin of Species. He also identified sexual selection as a likely mechanism, but found it problematic.
In biology, taxonomy is the scientific study of naming, defining (circumscribing) and classifying groups of biological organisms based on shared characteristics. Organisms are grouped into taxa and these groups are given a taxonomic rank; groups of a given rank can be aggregated to form a more inclusive group of higher rank, thus creating a taxonomic hierarchy. The principal ranks in modern use are domain, kingdom, phylum, class, order, family, genus, and species. The Swedish botanist Carl Linnaeus is regarded as the founder of the current system of taxonomy, as he developed a ranked system known as Linnaean taxonomy for categorizing organisms and binomial nomenclature for naming organisms.
Apes are a clade of Old World simians native to Africa and Southeast Asia, which together with its sister group Cercopithecidae form the catarrhine clade. Apes do not have tails due to a mutation of the TBXT gene. In traditional and non-scientific use, the term "ape" can include tailless primates taxonomically considered Cercopithecidae, and is thus not equivalent to the scientific taxon Hominoidea. There are two extant branches of the superfamily Hominoidea: the gibbons, or lesser apes; and the hominids, or great apes.
A transitional fossil is any fossilized remains of a life form that exhibits traits common to both an ancestral group and its derived descendant group. This is especially important where the descendant group is sharply differentiated by gross anatomy and mode of living from the ancestral group. These fossils serve as a reminder that taxonomic divisions are human constructs that have been imposed in hindsight on a continuum of variation. Because of the incompleteness of the fossil record, there is usually no way to know exactly how close a transitional fossil is to the point of divergence. Therefore, it cannot be assumed that transitional fossils are direct ancestors of more recent groups, though they are frequently used as models for such ancestors.
A living fossil is an extant taxon that cosmetically resembles related species known only from the fossil record. To be considered a living fossil, the fossil species must be old relative to the time of origin of the extant clade. Living fossils commonly are of species-poor lineages, but they need not be. While the body plan of a living fossil remains superficially similar, it is never the same species as the remote relatives it resembles, because genetic drift would inevitably change its chromosomal structure.
This is a list of topics in evolutionary biology.
Evolutionary taxonomy, evolutionary systematics or Darwinian classification is a branch of biological classification that seeks to classify organisms using a combination of phylogenetic relationship, progenitor-descendant relationship, and degree of evolutionary change. This type of taxonomy may consider whole taxa rather than single species, so that groups of species can be inferred as giving rise to new groups. The concept found its most well-known form in the modern evolutionary synthesis of the early 1940s.
The Hominini form a taxonomic tribe of the subfamily Homininae ("hominines"). Hominini includes the extant genera Homo (humans) and Pan and in standard usage excludes the genus Gorilla (gorillas).
The tree of life or universal tree of life is a metaphor, model and research tool used to explore the evolution of life and describe the relationships between organisms, both living and extinct, as described in a famous passage in Charles Darwin's On the Origin of Species (1859).
The affinities of all the beings of the same class have sometimes been represented by a great tree. I believe this simile largely speaks the truth.
Phylogenetic nomenclature is a method of nomenclature for taxa in biology that uses phylogenetic definitions for taxon names as explained below. This contrasts with the traditional approach, in which taxon names are defined by a type, which can be a specimen or a taxon of lower rank, and a description in words. Phylogenetic nomenclature is currently regulated by the International Code of Phylogenetic Nomenclature (PhyloCode).
Dawkins vs. Gould: Survival of the Fittest is a book about the differing views of biologists Richard Dawkins and Stephen Jay Gould by philosopher of biology Kim Sterelny. When first published in 2001 it became an international best-seller. A new edition was published in 2007 to include Gould's The Structure of Evolutionary Theory finished shortly before his death in 2002, and more recent works by Dawkins. The synopsis below is from the 2007 publication.
The Hominidae, whose members are known as the great apes or hominids, are a taxonomic family of primates that includes eight extant species in four genera: Pongo ; Gorilla ; Pan ; and Homo, of which only modern humans remain.
Evolution is the process of change in all forms of life over generations, and evolutionary biology is the study of how evolution occurs. Biological populations evolve through genetic changes that correspond to changes in the organisms' observable traits. Genetic changes include mutations, which are caused by damage or replication errors in organisms' DNA. As the genetic variation of a population drifts randomly over generations, natural selection gradually leads traits to become more or less common based on the relative reproductive success of organisms with those traits.
The chimpanzee–human last common ancestor (CHLCA) is the last common ancestor shared by the extant Homo (human) and Pan genera of Hominini. Due to complex hybrid speciation, it is not currently possible to give a precise estimate on the age of this ancestral population. While "original divergence" between populations may have occurred as early as 13 million years ago (Miocene), hybridization may have been ongoing until as recently as 4 million years ago (Pliocene).
The Hippocampinae are a subfamily of small marine fishes in the family Syngnathidae. Depending on the classification system used, it comprises either seahorses and pygmy pipehorses, or only seahorses.
The following outline is provided as an overview of and topical guide to evolution:
This glossary of evolutionary biology is a list of definitions of terms and concepts used in the study of evolutionary biology, population biology, speciation, and phylogenetics, as well as sub-disciplines and related fields. For additional terms from related glossaries, see Glossary of genetics, Glossary of ecology, and Glossary of biology.
The coral of life is a metaphor or a mathematical model useful to illustrate evolution of life or phylogeny at various levels of resolution, including individual organisms, populations, species and large taxonomic groups. Its use in biology resolves several practical and conceptual difficulties that are associated with the tree of life.