Plot
Jason Bourne and Marie Kreutz are living in Goa, India. He is still suffering from amnesia, so he records flashbacks about his life as a CIA assassin in a notebook.
In Berlin, a CIA agent working for Deputy Director Pamela Landy is paying $3 million to an unnamed Russian source for the Neski files, documents on the theft of $20 million seven years prior. The deal is interrupted by Kirill, a Russian Federal Security Service agent who works for oligarch Yuri Gretkov. He kills the agent and source, steals the files and money, and plants fingerprints framing Bourne for the attack.
After finding Bourne's fingerprint, Landy asks Section Chief Ward Abbott about Operation Treadstone, the defunct CIA program to which Bourne belonged. She tells Abbott that the CIA agent who stole the $20 million was named in the Neski files. Some years ago, Russian politician Vladimir Neski was about to identify the thief when he was killed by his wife in a suspected murder-suicide in Berlin. Landy believes that Bourne and Treadstone's late supervisor, Alexander Conklin, were involved and that Bourne killed the Neskis.
Gretkov directs Kirill to Goa to kill Bourne, who flees with Marie; Kirill follows and kills her, unaware that they switched seats in the midst of the chase. Bourne leaves Goa and travels to Naples, where he allows himself to be identified by security. He subdues a Diplomatic Security agent and a Carabinieri guard and copies the SIM card from his cell phone. From the subsequent phone call, he learns about Landy and the frame job.
Bourne goes to Munich to visit Jarda, the only other remaining Treadstone operative. Jarda informs him Treadstone was shut down after Conklin's death, then attacks him; Bourne strangles him to death, before destroying his home in a gas explosion as agents move in.
Bourne follows Landy and Abbott to Berlin as they meet former Treadstone support technician Nicky Parsons to question her about Bourne. Bourne believes the CIA is hunting him again and calls Landy from a nearby roof. He demands a meet-up with Nicky and indicates to Landy that he can see her in the office.
Bourne kidnaps Nicky in Alexanderplatz and learns from her that Abbott had been Conklin's boss. He releases her after she reveals she knows nothing about the mission. Bourne then visits the hotel where the killing took place and recalls more of his mission: he killed Neski on Conklin's orders, and when Neski's wife showed up, he shot her and made it look like a murder-suicide.
Danny Zorn, Conklin's former assistant, finds inconsistencies in the report of Bourne's involvement with the death of the agent and explains his theory to Abbott. Abbott then kills Zorn to prevent him from informing Landy.
Bourne breaks into Abbott's hotel room and records a conversation between him and Gretkov that incriminates them in the theft of the $20 million. When confronted, Abbott admits to Bourne that he stole the money, ordered Kirill to retrieve the files, and had Bourne framed before arranging for him to be silenced in Goa.
Abbott expects Bourne to kill him, but Bourne refuses, saying Marie would not want him to, and puts a gun on the table and leaves. Landy confronts Abbott about her suspicions and he kills himself; later, she finds an envelope containing the tape of Abbott's conversations with Gretkov and Bourne in her hotel room.
Bourne travels to Moscow to find Neski's daughter, Irena. Kirill, tasked once again by Gretkov with killing Bourne, finds and wounds him. Bourne flees in a stolen taxi and Kirill chases him. Bourne forces Kirill's vehicle into a concrete divider, and leaves behind a seriously wounded Kirill, as Gretkov is arrested with Landy watching in the background. Bourne locates Irena and confesses to murdering her parents, apologizing to her as he leaves.
Later in New York City, Bourne calls Landy. She thanks him for the tape, reveals his original name, David Webb, and his date and place of birth, and asks him to meet her. Bourne, who is watching her from a building tells her she looks tired and to get some rest, as he disappears into the city.
Production
The producers replaced Doug Liman, who directed The Bourne Identity. This was mainly due to the difficulties Liman had with the studio when making the first film, and their unwillingness to work with him again. British director Paul Greengrass was selected to direct the film after the producers saw Bloody Sunday (2002), Greengrass' depiction of the Bloody Sunday shootings in Northern Ireland, at Gilroy's suggestion. Producer Patrick Crowley liked Greengrass' "sense of the camera as [a] participatory viewer", a visual style Crowley thought would work well for The Bourne Supremacy. [3] The film was shot in reverse order of its settings: some portions of the car chase and the film's ending were shot in Moscow, then most of the rest of the film was shot in and around Berlin, and the opening scenes in Goa, India were filmed last. [4] [5]
"Two weeks before [the film's] release, [Greengrass] got together with its star, Matt Damon, came up with a new ending and phoned the producers saying the new idea was way better. And it would cost $200,000 and involve pulling Damon from the set of Ocean's Twelve for a re-shoot. Reluctantly the producers agreed—the movie tested 10 points higher with the new ending". [6]
