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Fusarium/fjuˈzɛəriəm/ (help·info) is a large genus of filamentous fungi, part of a group often referred to as hyphomycetes, widely distributed in soil and associated with plants. Most species are harmless saprobes, and are relatively abundant members of the soil microbial community. Some species produce mycotoxins in cereal crops that can affect human and animal health if they enter the food chain. The main toxins produced by these Fusarium species are fumonisins and trichothecenes. Despite most species apparently being harmless, some Fusarium species and subspecific groups are among the most important fungal pathogens of plants and animals.
Phytoplasmas are obligate intracellular parasites of plant phloem tissue and of the insect vectors that are involved in their plant-to-plant transmission. Phytoplasmas were discovered in 1967 by Japanese scientists who termed them mycoplasma-like organisms. Since their discovery, phytoplasmas have resisted all attempts at in vitro culture in any cell-free medium; routine cultivation in an artificial medium thus remains a major challenge. Phytoplasmas are characterized by the lack of a cell wall, a pleiomorphic or filamentous shape, a diameter normally less than 1 μm, and a very small genome.
Verticillium is a genus of fungi in the division Ascomycota, and are an anamorphic form of the family Plectosphaerellaceae. The genus used to include diverse groups comprising saprobes and parasites of higher plants, insects, nematodes, mollusc eggs, and other fungi, thus the genus used to have a wide-ranging group of taxa characterised by simple but ill-defined characters. The genus, currently thought to contain 51 species, may be broadly divided into three ecologically based groups - mycopathogens, entomopathogens, and plant pathogens and related saprotrophs. However, the genus has undergone recent revision into which most entomopathogenic and mycopathogenic isolates fall into a new group called Lecanicillium.
Lettuce mosaic virus (LMV) is a typical potyvirus, which causes one of the major virus diseases of lettuce crops worldwide.
Verticillium wilt is a wilt disease affecting over 350 species of eudicot plants. It is caused by six species of Verticillium fungi: V. dahliae, V. albo-atrum, V. longisporum, V. nubilum, V. theobromae and V. tricorpus. Many economically important plants are susceptible including cotton, tomatoes, potatoes, oilseed rape, eggplants, peppers and ornamentals, as well as others in natural vegetation communities. Many eudicot species and cultivars are resistant to the disease and all monocots, gymnosperms and ferns are immune.
Xanthomonas is a genus of bacteria, many of which cause plant diseases. There are at least 27 plant associated Xanthomonas spp., that all together infect at least 400 plant species. Different species typically have specific host and/or tissue range and colonization strategies.
Verticillium dahliae is a fungal plant pathogen. It causes verticillium wilt in many plant species, causing leaves to curl and discolor. It may cause death in some plants. Over 400 plant species are affected by Verticillium complex.
Pythium dissotocum is a plant pathogen infecting strawberry and rice.
Chlamydia is a genus of pathogenic Gram-negative bacteria that are obligate intracellular parasites. Chlamydia infections are the most common bacterial sexually transmitted diseases in humans and are the leading cause of infectious blindness worldwide.
Impatiens necrotic spot orthotospovirus(INSV) is a plant pathogenic virus of the order Bunyavirales. It was originally believed to be another strain of Tomato spotted wilt virus, but genetic investigations revealed them to be separate viruses. It is a negative-strand RNA virus which has a tripartite genome. It is largely spread by the insect vector of the western flower thrips. The virus infects more than 648 species of plants including important horticultural and agricultural species such as fuchsia, tomato, orchids, and lettuce (especially romaine). As the name implies, the main symptom on plants is necrotic spots that appear on the leaves. The INSV virus infects by injecting the RNA the virus contains into the cell which then starts using the cell resources to transcribe what the virus RNA states. Viral infection can often result in the death of the plant. The disease is mainly controlled by the elimination of the western flower thrip vector and by destroying any infected plant material.
Liberibacter is a genus of Gram-negative bacteria in the Rhizobiaceae family. Detection of the liberibacteria is based on PCR amplification of their 16S rRNA gene with specific primers. Members of the genus are plant pathogens mostly transmitted by psyllids. The genus was originally spelled Liberobacter.
DNA barcoding is a method of species identification using a short section of DNA from a specific gene or genes. The premise of DNA barcoding is that by comparison with a reference library of such DNA sections, an individual sequence can be used to uniquely identify an organism to species, just as a supermarket scanner uses the familiar black stripes of the UPC barcode to identify an item in its stock against its reference database. These "barcodes" are sometimes used in an effort to identify unknown species or parts of an organism, simply to catalog as many taxa as possible, or to compare with traditional taxonomy in an effort to determine species boundaries.
Viral metagenomics is the metagenomic study of viral genetic material obtained from environmental DNA samples or clinical DNA samples obtained from a host or natural reservoir. Metagenomic methods can be applied to study viruses in any system and has been used to describe various viruses associated with cancerous tumors, extreme environments, terrestrial ecosystems, and the blood and feces of humans. The term virome is also used to refer to viruses investigated by metagenomic sequencing of viral nucleic acids and is frequently used to describe environmental shotgun metagenomes. Viral metagenomics is a culture independent methodology that provides insights on viral diversity, abundance, and functional potential of viruses within the environment. Viruses lack a universal phylogenetic marker making metagenomics the only way to assess the genetic diversity of viruses in an environmental sample. With the advancements of techniques that can exploit next-generation sequencing, viruses can now be studied outside of culturable virus-host pairs. This approach has created improvements in molecular epidemiology and accelerated the discovery of novel viruses.
Heinrich Klebahn was a German mycologist and phytopathologist.
Verticillium nonalfalfae is a soilborne fungus in the order Hypocreales. It causes verticillium wilt in some plant species, particularly Ailanthus altissima. The fungus produces a resting mycelium characterized by brown-pigmented hyphae. It is most closely related to V. dahliae and V. alfalfae.
Verticillium alfalfae is a fungus. It causes verticillium wilt in some plant species, particularly alfalfa. It produces yellow-pigmented hyphae and microsclerotia, while producing resting mycelium. It is most closely related to V. albo-atrum and V. nonalfalfae.
Verticillium klebahnii is a fungus often pathogenically inhabiting lettuce. It causes verticillium wilt in some plant species. It produces yellow-pigmented hyphae and microsclerotia, while producing abundant chlamydospores and resting mycelium. It is most closely related to V. tricorpus and V. isaacii.
Verticillium zaregamsianum is a fungus often found in lettuce in Japan. It can causes verticillium wilt in some plant species. It produces yellow-pigmented hyphae and microsclerotia, while producing few chlamydospores and with sparse resting mycelium. It is most closely related to V. tricorpus.
DNA barcoding in diet assessment is the use of DNA barcoding to analyse the diet of organisms. and further detect and describe their trophic interactions. This approach is based on the identification of consumed species by characterization of DNA present in dietary samples, e.g. individual food remains, regurgitates, gut and fecal samples, homogenized body of the host organism, target of the diet study.
Ralstonia pseudosolanacearum is a soil-borne bacterium. It is a vascular phytopathogen that infects host plants through the root system causing wilting disease that causes loss in a wide range of crops. R. pseudosolanacearum is Gram negative and was originally identified as Ralstonia solanacearum, however, in 2014 Safni et al. proposed a taxonomic revision of the Ralstonia solanacearum species complex to reclassify phylotype strains, including R. pseudosolanacearum.
References
- ↑ Subbarao, Krishna; Gurung, Suraj; Short, Dylan; Hu, Xiaoping; Sandoya, German V; Hayes, Ryan J; Koike, Steven T. (2015). "Host Range of Verticillium isaacii and Verticillium klebahnii from Artichoke, Spinach and Lettuce". Plant Disease. 99 (7): 933–938. doi: 10.1094/PDIS-12-14-1307-RE . ISSN 0191-2917. PMID 30690967.
- ↑ Idnurm, Alexander; Inderbitzin, Patrik; Bostock, Richard M.; Davis, R. Michael; Usami, Toshiyuki; Platt, Harold W.; Subbarao, Krishna V. (2011). "Phylogenetics and Taxonomy of the Fungal Vascular Wilt Pathogen Verticillium, with the Descriptions of Five New Species". PLOS ONE. 6 (12): e28341. doi: 10.1371/journal.pone.0028341 . ISSN 1932-6203. PMC 3233568 . PMID 22174791.
