Cyprinidae is a family of freshwater fish commonly called the carp or minnow family, including the carps, the true minnows, and their relatives the barbs and barbels, among others. Cyprinidae is the largest and most diverse fish family, and the largest vertebrate animal family overall, with about 3,000 species; only 1,270 of these remain extant, divided into about 200 valid genera. Cyprinids range from about 12 mm in size to the 3 m (9.8 ft) giant barb. By genus and species count, the family makes up more than two-thirds of the ostariophysian order Cypriniformes. The family name is derived from the Greek word kyprînos.
Trout is a generic common name for numerous species of carnivorous freshwater ray-finned fishes belonging to the genera Oncorhynchus, Salmo and Salvelinus, all of which are members of the subfamily Salmoninae in the family Salmonidae. The word trout is also used for some similar-shaped but non-salmonid fish, such as the spotted seatrout/speckled trout.
The Murray cod is a large Australian predatory freshwater fish of the genus Maccullochella in the family Percichthyidae. Although the species is called a cod in the vernacular, it is not related to the Northern Hemisphere marine cod (Gadus) species. The Murray cod is an important part of Australia's vertebrate wildlife—as an apex predator in the Murray-Darling River system—and also significant in Australia's human culture. The Murray cod is the largest exclusively freshwater fish in Australia, and one of the largest in the world. Other common names for Murray cod include cod, greenfish, goodoo, Mary River cod, Murray perch, ponde, pondi and Queensland freshwater cod.
Lake Alexandrina is a coastal freshwater lake located between the Fleurieu and Kangaroo Island and Murray and Mallee regions of South Australia, about 100 kilometres (62 mi) south-east of Adelaide. The lake adjoins the smaller Lake Albert and a coastal lagoon called The Coorong to its southeast, before draining into the Great Australian Bight via a short, narrow opening known as Murray Mouth.
Metagenomics is the study of genetic material recovered directly from environmental or clinical samples by a method called sequencing. The broad field may also be referred to as environmental genomics, ecogenomics, community genomics or microbiomics.
The Macquarie perch is an Australian native freshwater fish of the Murray-Darling river system. It is a member of the family Percichthyidae and is closely related to the golden perch.
The golden perch is a medium-sized, yellow or gold-coloured species of Australian freshwater fish found primarily in the Murray-Darling River system, though a subspecies is found in the Lake Eyre-Cooper Creek system, and another subspecies, suspected to be ancestral to all other populations, is found in the Fitzroy River system in Queensland. Other common names for golden perch are "goldens", “yellowbelly” and "callop", the last generally used only in South Australia.
The flathead galaxias is a freshwater fish found in lowland rivers, streams and associated billabongs, backwaters, and wetlands of the southern Murray-Darling river system in southeastern Australia.
The eel-tailed catfish, Tandanus tandanus, is a species of catfish of the family Plotosidae. This fish is also known as dewfish, freshwater catfish, jewfish, and tandan.
The silver perch is a medium-sized freshwater fish of the family Terapontidae endemic to the Murray-Darling river system in south-eastern Australia.
Joseph Lyman DeRisi is an American biochemist, specializing in molecular biology, parasitology, genomics, virology, and computational biology.
The International Committee on Taxonomy of Viruses (ICTV) authorizes and organizes the taxonomic classification of and the nomenclature for viruses. The ICTV develops a universal taxonomic scheme for viruses, and thus has the means to appropriately describe, name, and classify every virus taxon. The members of the International Committee on Taxonomy of Viruses are considered expert virologists. The ICTV was formed from and is governed by the Virology Division of the International Union of Microbiological Societies. Detailed work, such as identifying new taxa and delimiting the boundaries of species, genera, families, etc. typically is performed by study groups of experts in the families.
In bioinformatics, k-mers are substrings of length contained within a biological sequence. Primarily used within the context of computational genomics and sequence analysis, in which k-mers are composed of nucleotides, k-mers are capitalized upon to assemble DNA sequences, improve heterologous gene expression, identify species in metagenomic samples, and create attenuated vaccines. Usually, the term k-mer refers to all of a sequence's subsequences of length , such that the sequence AGAT would have four monomers, three 2-mers, two 3-mers and one 4-mer (AGAT). More generally, a sequence of length will have k-mers and total possible k-mers, where is number of possible monomers.
Marnaviridae is a family of positive-stranded RNA viruses in the order Picornavirales that infect various photosynthetic marine protists. Members of the family have non-enveloped, icosahedral capsids. Replication occurs in the cytoplasm and causes lysis of the host cell. The first species of this family that was isolated is Heterosigma akashiwo RNA virus (HaRNAV) in the genus Marnavirus, which infects the toxic bloom-forming Raphidophyte alga, Heterosigma akashiwo. As of 2021, there are twenty species across seven genera in this family, as well as many other related virus sequences discovered through metagenomic sequencing that are currently unclassified.
The hydrothermal vent microbial community includes all unicellular organisms that live and reproduce in a chemically distinct area around hydrothermal vents. These include organisms in the microbial mat, free floating cells, or bacteria in an endosymbiotic relationship with animals. Chemolithoautotrophic bacteria derive nutrients and energy from the geological activity at Hydrothermal vents to fix carbon into organic forms. Viruses are also a part of the hydrothermal vent microbial community and their influence on the microbial ecology in these ecosystems is a burgeoning field of research.
Clinical metagenomic next-generation sequencing (mNGS) is the comprehensive analysis of microbial and host genetic material in clinical samples from patients by next-generation sequencing. It uses the techniques of metagenomics to identify and characterize the genome of bacteria, fungi, parasites, and viruses without the need for a prior knowledge of a specific pathogen directly from clinical specimens. The capacity to detect all the potential pathogens in a sample makes metagenomic next generation sequencing a potent tool in the diagnosis of infectious disease especially when other more directed assays, such as PCR, fail. Its limitations include clinical utility, laboratory validity, sense and sensitivity, cost and regulatory considerations.
Marine viruses are defined by their habitat as viruses that are found in marine environments, that is, in the saltwater of seas or oceans or the brackish water of coastal estuaries. Viruses are small infectious agents that can only replicate inside the living cells of a host organism, because they need the replication machinery of the host to do so. They can infect all types of life forms, from animals and plants to microorganisms, including bacteria and archaea.
Zhang Yongzhen, also known as Yong-Zhen Zhang, is a Chinese virologist known for his work relating to the COVID-19 pandemic. A professor at Fudan University, Zhang has discovered numerous RNA viruses and created a network of labs dedicated to monitoring new viruses. He led the team that sequenced and published the genome of SARS-CoV-2, the virus that causes COVID-19, in early January 2020.
Jemma Louise Geoghegan is a Scottish-born evolutionary virologist, based at the University of Otago, New Zealand, who specialises in researching emerging infectious diseases and the use of metagenomics to trace the evolution of viruses. As a leader in several government-funded research projects, Geoghegan became the public face of genomic sequencing during New Zealand's response to COVID-19. Her research has contributed to the discussion about the likely cause of COVID-19 and the challenges around predicting pandemics. She was a recipient of the Young Tall Poppy Award in 2017, a Rutherford Discovery Fellowship in 2020, and the 2021 Prime Minister's Emerging Scientist Prize.
Curtis A. Suttle is a Canadian microbiologist and oceanographer who is a faculty member at the University of British Columbia. Suttle is a Distinguished University Professor who holds appointments in Earth & Ocean Sciences, Botany, Microbiology & Immunology and the Institute for the Oceans and Fisheries and a Fellow of the Royal Society of Canada. On 29 December, 2021 he was named to the Order of Canada. His research is focused on the ecology of viruses in marine systems as well as other natural environments.
