Peter Karl Sorger

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  1. "Peter Sorger". sysbio.med.harvard.edu. Retrieved 18 December 2021.
  2. Sorger, P. K.; Pelham, H. R. (9 September 1988). "Yeast heat shock factor is an essential DNA-binding protein that exhibits temperature-dependent phosphorylation". Cell. 24 (6): 855–864. doi:10.1016/S0092-8674(88)91219-6. PMID   3044613. S2CID   45178990 . Retrieved 29 November 2021.
  3. Sorger, P. K.; Lewis, M. J.; Pelham, H. R. (September 3, 1987). "Heat shock factor is regulated differently in yeast and HeLa cells". Nature. 329 (6134): 81–84. Bibcode:1987Natur.329...81S. doi:10.1038/329081a0. PMID   3306402. S2CID   4315665 . Retrieved 29 November 2021.
  4. He, X.; Rines, D. R.; Espelin, C. W.; Sorger, P. K. (2001). "Molecular analysis of kinetochore-microtubule attachment in budding yeast". Cell. 106 (2): 195–206. doi: 10.1016/S0092-8674(01)00438-X . PMID   11511347. S2CID   15917728.
  5. Kaplan, K. B.; Hyman, A. A.; Sorger, P. K. (1997). "Regulating the yeast kinetochore by ubiquitin-dependent degradation and Skp1p-mediated phosphorylation". Cell. 91 (4): 491–500. doi: 10.1016/s0092-8674(00)80435-3 . PMID   9390558. S2CID   9159412.
  6. Foijer, F.; Albacker, L. A.; Bakker, B.; Spierings, D.C.; Yue, Y.; Xie, S. Z.; Davis, S.; Lutum-Jehle, A.; Takemoto, D. (2017). "Deletion of the MAD2L1 spindle assembly checkpoint gene is tolerated in mouse models of acute T-cell lymphoma and hepatocellular carcinoma". eLife. 6: e20873. doi:10.7554/eLife.20873. PMC   5400506 . PMID   28318489 . Retrieved 16 December 2021.
  7. Dobles, M.; Liberal, V.; Scott, M. L.; Benezra, R.; Sorger, P. K. (2000). "Chromosome missegregation and apoptosis in mice lacking the mitotic checkpoint protein Mad2". Cell. 101 (6): P635-645. doi: 10.1016/S0092-8674(00)80875-2 . PMID   10892650. S2CID   12738892.
  8. Michel, L. S.; Liberal, V.; Chatterjee, A.; Kirchwegger, R.; Pasche, B.; Gerald, W.; Dobles, M.; Sorger, P. K.; Murty, V. V. V. S.; Benzra, R. (2001). "MAD2 haplo-insufficiency causes premature anaphase and chromosome instability in mammalian cells". Nature. 409 (6818): 355–359. doi:10.1038/35053094. PMID   11201745. S2CID   4417961 . Retrieved 16 December 2021.
  9. "NIH grant aids MIT systems biology". MIT News. Retrieved 17 December 2021.
  10. Janes, K. A.; Albeck, J. G.; Gaudet, S.; Sorger, P. K.; Lauffenburger, D. A.; Yaffe, M. B. (2005-12-09). "A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis". Science. 310 (5754): 1646–53. Bibcode:2005Sci...310.1646J. doi:10.1126/science.1116598. PMID   16339439. S2CID   22495219 . Retrieved 16 December 2021.
  11. Janes, K. A.; Gaudet, S.; Albeck, J. G.; Nielsen, U. B.; Lauffenburger, D. A.; Sorger, P. K. (2006-03-24). "The response of human epithelial cells to TNF involves an inducible autocrine cascade". Cell. 124 (6): 1225–1239. doi: 10.1016/j.cell.2006.01.041 . PMID   16564013. S2CID   540286.
  12. Albeck, J. G.; Burke, J. M.; Spencer, S. L.; Lauffenburger, D. A.; Sorger, P. K. (2008-12-02). "Modeling a Snap-Action, Variable-Delay Switch Controlling Extrinsic Cell Death". PLOS Biology. 6 (12): 2831–2852. doi:10.1371/journal.pbio.0060299. PMC   2592357 . PMID   19053173.
  13. "Friendster for Proteins". Forbes. Feb 23, 2007. Retrieved 17 December 2021.
  14. Spencer, S. L.; Gaudet, S.; Albeck, J. G.; Burke, J. M.; Sorger, P. K. (2009-05-21). "Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis". Nature. 459 (7245): 428–32. Bibcode:2009Natur.459..428S. doi:10.1038/nature08012. PMC   2858974 . PMID   19363473.
  15. Spencer, S. L.; Sorger, P. K. (2011-03-18). "Measuring and modeling apoptosis in single cells". Cell. 144 (6): 926–39. doi:10.1016/j.cell.2011.03.002. PMC   3087303 . PMID   21414484.
  16. Lopez, C. F.; Muhlich, J. L.; Bachman, J. A.; Sorger, P. K. (2013-02-19). "Programming biological models in Python using PySB". Molecular Systems Biology. 9: 646. doi:10.1038/msb.2013.1. PMC   3588907 . PMID   23423320.
  17. Prabhakar, Arati. "The merging of humans and machines is happening now". WIRED. Retrieved 17 December 2021.
  18. Gyori, B. M.; Bachman, J. A.; Subramanian, K.; Muhlich, J. L.; Galescu, L.; Sorger, P. K. (2017-11-24). "From word models to executable models of signaling networks using automated assembly". Molecular Systems Biology. 13 (11): 954. doi:10.15252/msb.20177651. PMC   5731347 . PMID   29175850.
  19. Sorger, P. K.; Allerheiligen, S.R.B. (October 2011). "Quantitative and Systems Pharmacology in the Post-genomic Era: New Approaches to Discovering Drugs and Understanding Therapeutic Mechanisms" (PDF). An NIH White Paper by the QSP Workshop Group: 1–47.
  20. Xie, K. (17 June 2013). "Systematic Drug Discovery". Harvard Magazine. Retrieved 17 December 2021.
  21. Bebinger, M. (August 10, 2015). "State-Funded Lab At Harvard Medical Aims To Reinvent Drug Discovery". WBUR. Retrieved 17 December 2021.
  22. "Harvard Medical School Opens Laboratory of Systems Pharmacology". Massachusetts Life Sciences Center. 24 September 2014. Retrieved 17 December 2021.
  23. "Investing in Innovation: Massachusetts Life Sciences Center gives Boston biomedicine an $18 million boost". HMS News. Retrieved 17 December 2021.
  24. "HARVARD MEDICAL SCHOOL LABORATORY OF SYSTEMS PHARMACOLOGY". BDS Architects. Retrieved 17 December 2021.
  25. Niepel, M.; Hafner, M.; Mills, C. E.; Subramanian, K.; Williams, E. H.; Chung, M.; Gaudio, B.; Barrette, A. M.; Stern, A. D.; Hu, B.; Korkola, J. E.; LINCS Consortium; Gray, J. W.; Birtwistle, M. R.; Heiser, L. M.; Sorger, P. K. (2019-07-05). "A Multi-center Study on the Reproducibility of Drug-Response Assays in Mammalian Cell Lines". Cell Systems. 9 (1): 35–48.e5. doi:10.1016/j.cels.2019.06.005. PMC   6700527 . PMID   31302153.
  26. Fallahi-Sichani, M.; Honarnejad, S.; Heiser, L. M.; Gray, J. W.; Sorger, P. K. (2013-11-01). "Metrics other than potency reveal systematic variation in responses to cancer drugs". Nature Chemical Biology. 9 (11): 708–14. doi:10.1038/nchembio.1337. PMC   3947796 . PMID   24013279.
  27. Hafner, M.; Niepel, M.; Chung, M.; Sorger, P. K. (2016-06-01). "Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs". Nature Methods. 13 (6): 521–527. doi:10.1038/nmeth.3853. PMC   4887336 . PMID   27135972.
  28. Mills, C. E.; Subramanian, K.; Hafner, M.; Niepel, M.; Gerosa, L.; Chung, M.; Victor, C.; Gaudio, B.; Yapp, C.; Sorger, P. K. (2021-08-28). "Multiplexed and reproducible high content screening of live and fixed cells using the Dye Drop method". doi:10.1101/2021.08.27.457854. S2CID   237356861 . Retrieved 2021-09-27.{{cite journal}}: Cite journal requires |journal= (help)
  29. Hafner, M.; Mills, C. E.; Subramanian, K.; Chen, C.; Chung, M.; Boswell, S. A.; Everley, R. A.; Liu, C.; Walmsley, C. S.; Juric, D.; Sorger, P. K. (2019-08-15). "Multiomics Profiling Establishes the Polypharmacology of FDA-Approved CDK4/6 Inhibitors and the Potential for Differential Clinical Activity". Cell Chemical Biology. 26 (8): 1067–1080.e8. doi:10.1016/j.chembiol.2019.05.005. PMC   6936329 . PMID   31178407.
  30. AlQuraishi, M.; Sorger, P. K. (2021-10-04). "Differentiable biology: using deep learning for biophysics-based and data-driven modeling of molecular mechanisms". Nature Methods. 18 (10): 1169–1180. doi:10.1038/s41592-021-01283-4. ISSN   1548-7091. PMC   8793939 . PMID   34608321.
  31. Cunningham, J. M.; Koytiger, G.; Sorger, P. K.; AlQuraishi, M. (2020-02-06). "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning". Nature Methods. 17 (2): 175–183. doi:10.1038/s41592-019-0687-1. PMC   7004877 . PMID   31907444.
  32. Lin, J.-R.; Izar, B.; Wang, S.; Yapp, C.; Mei, S.; Shah, P. M.; Santagata, S.; Sorger, P. K. (2018-07-11). "Highly multiplexed immunofluorescence imaging of human tissues and tumors using t-CyCIF and conventional optical microscopes". eLife. 7. doi:10.7554/eLife.31657. ISSN   2050-084X. PMC   6075866 . PMID   29993362 . Retrieved 17 December 2021.
  33. Rashid, R.; Chen, Y.-A.; Hoffer, J.; Muhlich, J. L.; Lin, J.-R.; Krueger, R.; Pfister, H.; Mitchell, R.; Santagata, S.; Sorger, P. K. (2021-11-08). "Narrative online guides for the interpretation of digital-pathology images and tissue-atlas data". Nature Biomedical Engineering. 6 (5): 515–526. doi:10.1038/s41551-021-00789-8. PMC   9079188 . PMID   34750536.
  34. "Atlas maker: Q&A with Peter Sorger". Ludwig Cancer Research. Retrieved 16 December 2021.
  35. "CyCIF - Cyclic Immunofluorescence" . Retrieved 17 December 2021.
  36. Liu, D.; Lin, J.-R.; Robitschek, E. J.; Kasumova, G. G.; Heyde, A.; Shi, A.; Kraya, A.; Zhang, G.; Moll, T.; Frederick, D. T.; Chen, Y.-A.; Wang, S.; Schapiro, D.; Ho, L.-L.; Bi, K.; Sahu, A.; Mei, S.; Miao, B.; Sharova, T.; Alvarez-Breckenridge, C.; Stocking, J. H.; Kim, T.; Fadden, R.; Lawrence, D.; Hoang, M. P.; Cahill, D. P.; Malehmir, M.; Nowak, M. A.; Brastianos, P. K.; Lian, C. G.; Ruppin, E.; Izar, B.; Herlyn, M.; Van Allen, E. M.; Nathanson, K.; Flaherty, K. T.; Sullivan, R. J.; Kellis, M; Sorger, P. K.; Boland, G. M. (2021-05-03). "Evolution of delayed resistance to immunotherapy in a melanoma responder". Nature Medicine. 27 (6): 985–992. doi:10.1038/s41591-021-01331-8. PMC   8474080 . PMID   33941922.
  37. Palmer, A. C.; Sorger, P. K. (2017-12-14). "Combination Cancer Therapy Can Confer Benefit via Patient-to-Patient Variability without Drug Additivity or Synergy". Cell. 171 (7): 1678–1691.e13. doi:10.1016/j.cell.2017.11.009. ISSN   1097-4172. PMC   5741091 . PMID   29245013.
  38. Palmer, A. C; Izar, B.; Sorger, P. K (2020-02-04). "Combinatorial benefit without synergy in recent clinical trials of immune checkpoint inhibitors". pp. 2020–01.31.20019604. medRxiv   10.1101/2020.01.31.20019604v2 .
  39. Chen, C.; Liu, F.; Ren, Y.; Suttner, L.; Sun, Z.; Shentu, Y.; Schmidt, E. V. (2020-11-01). "Independent drug action and its statistical implications for development of combination therapies". Contemporary Clinical Trials. 98: 106126. doi:10.1016/j.cct.2020.106126. PMID   32853780. S2CID   221359327 . Retrieved 17 December 2021.
  40. "Cancer Trials". CANCERTRIALS.io. Retrieved 17 December 2021.
  41. Plana, D.; Fell, G.; Alexander, B. M.; Palmer, A. C.; Sorger, P. K. (2021-05-17). "Cancer patient survival can be accurately parameterized, revealing time-dependent therapeutic effects and doubling the precision of small trials". doi:10.1101/2021.05.14.442837. S2CID   234785442 . Retrieved 2021-05-18.{{cite journal}}: Cite journal requires |journal= (help)
  42. Sinha, M. S.; Bourgeois, F.T.; Sorger, Peter K. (2020-06-18). "Personal Protective Equipment for COVID-19: Distributed Fabrication and Additive Manufacturing". American Journal of Public Health. 110 (8): 1162–1164. doi:10.2105/AJPH.2020.305753. PMC   7349433 . PMID   32552025.
  43. "PanFab News". PanFab. Retrieved 17 December 2021.
  44. Mostaghimi, A.; Antonini, M.-J.; Plana, D.; Anderson, P. D.; Beller, B.; Boyer, E. W.; Fannin, A.; Freake, J.; Oakley, R.; Sinha, M. S.; Smith, L.; Van, C.; Yang, H.; Sorger, P. K.; LeBoeuf, N. R.; Yu, S. H. (2020-12-18). "Regulatory and Safety Considerations in Deploying a Locally Fabricated, Reusable Face Shield in a Hospital Responding to the COVID-19 Pandemic". Med. 1 (1): 139–151.e4. doi:10.1016/j.medj.2020.06.003. hdl:1721.1/128858. PMC   7304404 . PMID   32838357.
  45. McAvoy, M.; Bui, A.-T. N.; Hansen, C.; Plana, D.; Said, J. T.; Yu, Z.; Yang, H.; Freake, J.; Van, C.; Krikorian, D.; Cramer, A.; Smith, L.; Jiang, L.; Lee, K. J.; Li, S. J.; Beller, B.; Huggins, K.; Short, M. P.; Yu, S. H.; Mostaghimi, A.; Sorger, P. K.; LeBoeuf, N. R. (2021-06-07). "3D Printed frames to enable reuse and improve the fit of N95 and KN95 respirators". BMC Biomedical Engineering. 3 (1): 10. doi:10.1186/s42490-021-00055-7. PMC   8182357 . PMID   34099062.
  46. Kothakonda, A.; Atta, L.; Plana, D.; Ward, F.; Davis, C.; Cramer, A.; Moran, R.; Freake, J.; Tian, E.; Mazor, O.; Gorelik, P.; Van, C.; Hansen, C.; Yang, H.; Sinha, M. S.; Li, J.; Yu, S. H.; LeBoeuf, N. R.; Sorger, P. K. (2021-03-29). "De novo Powered Air-Purifying Respirator Design and Fabrication for Pandemic Response". medRxiv   10.1101/2021.03.25.21252076 .
  47. Cramer, A. K.; Plana, D.; Yang, H.; Carmack, M. M.; Tian, E.; Sinha, M. S.; Krikorian, D.; Turner, D.; Mo, J.; Li, J.; Gupta, R.; Manning, H.; Bourgeois, F. T.; Yu, S. H.; Sorger, P. K.; LeBoeuf, N. R. (2021-01-21). "Analysis of SteraMist ionized hydrogen peroxide technology in the sterilization of N95 respirators and other PPE". Scientific Reports. 11 (1): 2051. doi:10.1038/s41598-021-81365-7. PMC   7819989 . PMID   33479334.
  48. Antonini, M.-J.; Plana, D.; Srinivasan, S.; Atta, L.; Achanta, A.; Yang, H.; Cramer, A.; Freake, J.; Sinha, M. S.; Yu, S. H.; LeBoeuf, N. R.; Linville-Engler, B.; Sorger, P. K. (2020-09-24). "A Crisis-Responsive Framework for Medical Device Development during the COVID-19 Pandemic". doi:10.20944/preprints202009.0577.v1. S2CID   224873745 . Retrieved 2020-12-01.{{cite journal}}: Cite journal requires |journal= (help)
Peter Karl Sorger
Peter Sorger.jpg
Sorger in 2014
Born1961 (age 6162)
TitleOtto Krayer Professor of Systems Pharmacology, Harvard Medical School
SpouseCaroline Shamu
Awards
Academic background
Alma mater
Thesis The transcriptional regulation of heat shock genes (1988)
Doctoral advisor Hugh Pelham
Other advisors