RAB6A

RAB6A
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1YZQ, 2GIL, 3BBP, 3CWZ, 4DKX
Identifiers
Aliases	RAB6A , RAB6, member RAS oncogene family
External IDs	OMIM: 179513 MGI: 894313 HomoloGene: 55697 GeneCards: RAB6A
Gene location (Human) Chr. Chromosome 11 (human) [1] Band 11q13.4 Start 73,675,638 bp [1] End 73,761,137 bp [1]
Gene location (Mouse) Chr. Chromosome 7 (mouse) [2] Band 7|7 E2 Start 100,256,617 bp [2] End 100,290,475 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in Achilles tendon ganglionic eminence Brodmann area 10 frontal pole stromal cell of endometrium middle frontal gyrus rectum popliteal artery right coronary artery cerebellar hemisphere Top expressed in primary motor cortex prefrontal cortex cingulate gyrus lateral geniculate nucleus medial dorsal nucleus ventral tegmental area hippocampus proper lateral hypothalamus ventromedial nucleus dorsal tegmental nucleus More reference expression data BioGPS More reference expression data
Gene ontology Molecular function nucleotide binding protein domain specific binding GTP binding myosin V binding protein binding GTPase activity Cellular component Golgi apparatus membrane endosome to plasma membrane transport vesicle trans-Golgi network extracellular exosome cytoplasmic vesicle trans-Golgi network membrane cytosol endoplasmic reticulum membrane Golgi membrane plasma membrane secretory granule membrane Biological process antigen processing and presentation early endosome to Golgi transport peptidyl-cysteine methylation protein localization to Golgi apparatus protein transport minus-end-directed organelle transport along microtubule viral process vesicle-mediated transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum neutrophil degranulation transport intracellular protein transport intra-Golgi vesicle-mediated transport Rab protein signal transduction retrograde transport, endosome to Golgi Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 5870 19346 Ensembl ENSG00000175582 ENSMUSG00000030704 UniProt P20340 P35279 RefSeq (mRNA) NM_198896 NM_001243718 NM_001243719 NM_002869 NM_001163663 NM_024287 RefSeq (protein) NP_001230647 NP_001230648 NP_002860 NP_942599 NP_001157135 NP_077249 Location (UCSC) Chr 11: 73.68 – 73.76 Mb Chr 7: 100.26 – 100.29 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Ras-related protein Rab-6A is a protein that in humans is encoded by the RAB6A gene located in the eleventh chromosome. ^[5] Its main function is the regulation of protein transport from the Golgi complex to the endoplasmic reticulum and the exocytosis along with the microtubules.

Interactions

RAB6A has been shown to interact with:

• BICD1, ^{[6] [7]}
• DCTN1 ^[6]
• ERC1, ^[8] and
• KIF20A. ^{[9] [10]}

References

1. GRCh38: Ensembl release 89: ENSG00000175582 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000030704 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Entrez Gene: RAB6A RAB6A, member RAS oncogene family".
6. Short B, Preisinger C, Schaletzky J, Kopajtich R, Barr FA (October 2002). "The Rab6 GTPase regulates recruitment of the dynactin complex to Golgi membranes". Curr. Biol. 12 (20): 1792–5. Bibcode:2002CBio...12.1792S. doi: 10.1016/s0960-9822(02)01221-6 . PMID   12401177.
7. Matanis T, Akhmanova A, Wulf P, Del Nery E, Weide T, Stepanova T, Galjart N, Grosveld F, Goud B, De Zeeuw CI, Barnekow A, Hoogenraad CC (December 2002). "Bicaudal-D regulates COPI-independent Golgi-ER transport by recruiting the dynein-dynactin motor complex". Nat. Cell Biol. 4 (12): 986–92. doi:10.1038/ncb891. PMID   12447383. S2CID   7953140.
8. Monier S, Jollivet F, Janoueix-Lerosey I, Johannes L, Goud B (April 2002). "Characterization of novel Rab6-interacting proteins involved in endosome-to-TGN transport". Traffic. 3 (4): 289–97. doi: 10.1034/j.1600-0854.2002.030406.x . PMID   11929610. S2CID   22993226.
9. Echard A, Jollivet F, Martinez O, Lacapère JJ, Rousselet A, Janoueix-Lerosey I, Goud B (January 1998). "Interaction of a Golgi-associated kinesin-like protein with Rab6". Science. 279 (5350): 580–5. Bibcode:1998Sci...279..580E. doi:10.1126/science.279.5350.580. PMID   9438855.
10. Echard A, Opdam FJ, de Leeuw HJ, Jollivet F, Savelkoul P, Hendriks W, Voorberg J, Goud B, Fransen JA (November 2000). "Alternative splicing of the human Rab6A gene generates two close but functionally different isoforms". Mol. Biol. Cell. 11 (11): 3819–33. doi:10.1091/mbc.11.11.3819. PMC   15039 . PMID   11071909.

Further reading

• Rousseau-Merck MF, Zahraoui A, Touchot N, Tavitian A, Berger R (1991). "Chromosome assignment of four RAS-related RAB genes". Hum. Genet. 86 (4): 350–4. doi:10.1007/BF00201831. PMID   1999336. S2CID   30730416.
• Goud B, Zahraoui A, Tavitian A, Saraste J (1990). "Small GTP-binding protein associated with Golgi cisternae". Nature. 345 (6275): 553–6. Bibcode:1990Natur.345..553G. doi:10.1038/345553a0. PMID   2112230. S2CID   4341620.
• Zahraoui A, Touchot N, Chardin P, Tavitian A (1989). "The human Rab genes encode a family of GTP-binding proteins related to yeast YPT1 and SEC4 products involved in secretion". J. Biol. Chem. 264 (21): 12394–401. doi: 10.1016/S0021-9258(18)63872-4 . PMID   2501306.
• Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID   8125298.
• Beranger F, Cadwallader K, Porfiri E, Powers S, Evans T, de Gunzburg J, Hancock JF (1994). "Determination of structural requirements for the interaction of Rab6 with RabGDI and Rab geranylgeranyltransferase". J. Biol. Chem. 269 (18): 13637–43. doi: 10.1016/S0021-9258(17)36877-1 . PMID   8175798.
• Cremers FP, Armstrong SA, Seabra MC, Brown MS, Goldstein JL (1994). "REP-2, a Rab escort protein encoded by the choroideremia-like gene". J. Biol. Chem. 269 (3): 2111–7. doi: 10.1016/S0021-9258(17)42142-9 . PMID   8294464.
• Karniguian A, Zahraoui A, Tavitian A (1993). "Identification of small GTP-binding rab proteins in human platelets: thrombin-induced phosphorylation of rab3B, rab6, and rab8 proteins". Proc. Natl. Acad. Sci. U.S.A. 90 (16): 7647–51. Bibcode:1993PNAS...90.7647K. doi: 10.1073/pnas.90.16.7647 . PMC   47199 . PMID   8356066.
• Andersson B, Wentland MA, Ricafrente JY, Liu W, Gibbs RA (1996). "A "double adaptor" method for improved shotgun library construction". Anal. Biochem. 236 (1): 107–13. doi:10.1006/abio.1996.0138. PMID   8619474.
• Bonaldo MF, Lennon G, Soares MB (1997). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Res. 6 (9): 791–806. doi: 10.1101/gr.6.9.791 . PMID   8889548.
• Yu W, Andersson B, Worley KC, Muzny DM, Ding Y, Liu W, Ricafrente JY, Wentland MA, Lennon G, Gibbs RA (1997). "Large-scale concatenation cDNA sequencing". Genome Res. 7 (4): 353–8. doi:10.1101/gr.7.4.353. PMC   139146 . PMID   9110174.
• Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID   9373149.
• Echard A, Jollivet F, Martinez O, Lacapère JJ, Rousselet A, Janoueix-Lerosey I, Goud B (1998). "Interaction of a Golgi-associated kinesin-like protein with Rab6". Science. 279 (5350): 580–5. Bibcode:1998Sci...279..580E. doi:10.1126/science.279.5350.580. PMID   9438855.
• Cuif MH, Possmayer F, Zander H, Bordes N, Jollivet F, Couedel-Courteille A, Janoueix-Lerosey I, Langsley G, Bornens M, Goud B (1999). "Characterization of GAPCenA, a GTPase activating protein for Rab6, part of which associates with the centrosome". EMBO J. 18 (7): 1772–82. doi:10.1093/emboj/18.7.1772. PMC   1171263 . PMID   10202141.
• Barr FA (1999). "A novel Rab6-interacting domain defines a family of Golgi-targeted coiled-coil proteins". Curr. Biol. 9 (7): 381–4. Bibcode:1999CBio....9..381B. doi: 10.1016/S0960-9822(99)80167-5 . PMID   10209123.
• Bucci C, Chiariello M, Lattero D, Maiorano M, Bruni CB (1999). "Interaction cloning and characterization of the cDNA encoding the human prenylated rab acceptor (PRA1)". Biochem. Biophys. Res. Commun. 258 (3): 657–62. doi:10.1006/bbrc.1999.0651. PMID   10329441.
• Caillol N, Pasqualini E, Lloubes R, Lombardo D (2000). "Impairment of bile salt-dependent lipase secretion in human pancreatic tumoral SOJ-6 cells". J. Cell. Biochem. 79 (4): 628–47. doi:10.1002/1097-4644(20001215)79:4<628::AID-JCB120>3.0.CO;2-T. PMID   10996854. S2CID   11614620.
• Shan J, Mason JM, Yuan L, Barcia M, Porti D, Calabro A, Budman D, Vinciguerra V, Xu H (2001). "Rab6c, a new member of the rab gene family, is involved in drug resistance in MCF7/AdrR cells". Gene. 257 (1): 67–75. doi: 10.1016/S0378-1119(00)00395-4 . PMID   11054569.
• Echard A, Opdam FJ, de Leeuw HJ, Jollivet F, Savelkoul P, Hendriks W, Voorberg J, Goud B, Fransen JA (2001). "Alternative splicing of the human Rab6A gene generates two close but functionally different isoforms". Mol. Biol. Cell. 11 (11): 3819–33. doi:10.1091/mbc.11.11.3819. PMC   15039 . PMID   11071909.
• Hartley JL, Temple GF, Brasch MA (2001). "DNA cloning using in vitro site-specific recombination". Genome Res. 10 (11): 1788–95. doi:10.1101/gr.143000. PMC   310948 . PMID   11076863.
• Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Böcher M, Blöcker H, Bauersachs S, Blum H, Lauber J, Düsterhöft A, Beyer A, Köhrer K, Strack N, Mewes HW, Ottenwälder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A (2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC   311072 . PMID   11230166.